Eif4ebp2 (eukaryotic translation initiation factor 4E binding protein 2) - Rat Genome Database

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Gene: Eif4ebp2 (eukaryotic translation initiation factor 4E binding protein 2) Rattus norvegicus
Analyze
Symbol: Eif4ebp2
Name: eukaryotic translation initiation factor 4E binding protein 2
RGD ID: 1310824
Description: Predicted to enable eukaryotic initiation factor 4E binding activity and translation repressor activity. Predicted to be involved in several processes, including memory; negative regulation of translational initiation; and social behavior. Predicted to act upstream of or within TOR signaling and insulin receptor signaling pathway. Is active in postsynapse. Orthologous to human EIF4EBP2 (eukaryotic translation initiation factor 4E binding protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: eukaryotic translation initiation factor 4E-binding protein 2; LOC361845; MGC124760
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82029,922,260 - 29,942,922 (-)NCBIGRCr8
mRatBN7.22029,379,444 - 29,400,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,382,668 - 29,399,946 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2030,395,410 - 30,416,078 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02029,781,661 - 29,802,329 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02030,524,161 - 30,544,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,055,292 - 31,072,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,055,789 - 31,072,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,841,624 - 32,858,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,562,634 - 29,579,209 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,577,608 - 29,592,890 (-)NCBI
Celera2030,812,166 - 30,828,643 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methidathion  (ISO)
milrinone  (EXP)
monosodium L-glutamate  (ISO)
nefazodone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
Phenelzine  (ISO)
phenobarbital  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
rotenone  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. A rapamycin-sensitive signaling pathway contributes to long-term synaptic plasticity in the hippocampus. Tang SJ, etal., Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):467-72. doi: 10.1073/pnas.012605299. Epub 2001 Dec 26.
Additional References at PubMed
PMID:8939971   PMID:12477932   PMID:16237163   PMID:17029989   PMID:20347422   PMID:23172145   PMID:23591646   PMID:25822952   PMID:37175950  


Genomics

Comparative Map Data
Eif4ebp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82029,922,260 - 29,942,922 (-)NCBIGRCr8
mRatBN7.22029,379,444 - 29,400,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,382,668 - 29,399,946 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2030,395,410 - 30,416,078 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02029,781,661 - 29,802,329 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02030,524,161 - 30,544,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,055,292 - 31,072,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,055,789 - 31,072,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,841,624 - 32,858,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,562,634 - 29,579,209 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,577,608 - 29,592,890 (-)NCBI
Celera2030,812,166 - 30,828,643 (-)NCBICelera
Cytogenetic Map20q11NCBI
EIF4EBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381070,404,145 - 70,428,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1070,404,145 - 70,428,618 (+)EnsemblGRCh38hg38GRCh38
GRCh371072,163,901 - 72,188,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,833,928 - 71,853,676 (+)NCBINCBI36Build 36hg18NCBI36
Build 341071,833,927 - 71,853,675NCBI
Celera1065,444,292 - 65,468,805 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1066,157,695 - 66,182,214 (+)NCBIHuRef
CHM1_11072,446,090 - 72,470,594 (+)NCBICHM1_1
T2T-CHM13v2.01071,273,202 - 71,298,049 (+)NCBIT2T-CHM13v2.0
Eif4ebp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,268,276 - 61,288,448 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,264,270 - 61,288,440 (-)EnsemblGRCm39 Ensembl
GRCm381061,428,491 - 61,452,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1061,428,491 - 61,452,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv371060,895,245 - 60,915,417 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361060,827,854 - 60,848,026 (-)NCBIMGSCv36mm8
Celera1062,533,926 - 62,553,995 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.21NCBI
Eif4ebp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,844,750 - 20,879,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,844,750 - 20,879,874 (-)NCBIChiLan1.0ChiLan1.0
EIF4EBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2882,559,591 - 82,582,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11082,564,915 - 82,583,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01066,879,744 - 66,903,027 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11069,399,268 - 69,430,119 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1069,406,745 - 69,423,249 (+)Ensemblpanpan1.1panPan2
EIF4EBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1421,339,037 - 21,364,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl421,339,045 - 21,358,072 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha421,471,627 - 21,496,432 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0421,614,267 - 21,639,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl421,614,285 - 21,632,943 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1421,511,914 - 21,536,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,717,327 - 21,742,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0422,068,622 - 22,093,439 (+)NCBIUU_Cfam_GSD_1.0
Eif4ebp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721359,690,015 - 59,714,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,184,539 - 8,207,472 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,182,740 - 8,207,466 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4EBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1473,323,642 - 73,349,291 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11473,323,609 - 73,355,443 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21479,241,168 - 79,266,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4EBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1960,867,810 - 60,894,899 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl960,874,602 - 60,894,919 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604821,614,236 - 21,641,339 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif4ebp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247544,523,661 - 4,549,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247544,523,616 - 4,553,994 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:114
Interacting mature miRNAs:126
Transcripts:ENSRNOT00000000671
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000082448   ⟹   ENSRNOP00000071662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,382,668 - 29,399,927 (-)Ensembl
Rnor_6.0 Ensembl2031,055,789 - 31,072,469 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117491   ⟹   ENSRNOP00000084079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,385,598 - 29,399,946 (-)Ensembl
RefSeq Acc Id: NM_001033069   ⟹   NP_001028241
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,922,260 - 29,942,922 (-)NCBI
mRatBN7.22029,379,444 - 29,400,110 (-)NCBI
Rnor_6.02031,055,782 - 31,072,469 (-)NCBI
Rnor_5.02032,841,624 - 32,858,081 (-)NCBI
RGSC_v3.42029,562,634 - 29,579,209 (-)RGD
Celera2030,812,166 - 30,828,643 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001028241 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00639 (Get FASTA)   NCBI Sequence Viewer  
  CAT01883 (Get FASTA)   NCBI Sequence Viewer  
  EDL93023 (Get FASTA)   NCBI Sequence Viewer  
  EDL93024 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071662.1
  ENSRNOP00000084079.1
RefSeq Acc Id: NP_001028241   ⟸   NM_001033069
- UniProtKB: Q497A9 (UniProtKB/TrEMBL),   A0A0G2K113 (UniProtKB/TrEMBL),   A0A8I6A0I3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071662   ⟸   ENSRNOT00000082448
Ensembl Acc Id: ENSRNOP00000084079   ⟸   ENSRNOT00000117491

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q497A9-F1-model_v2 AlphaFold Q497A9 1-120 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701603
Promoter ID:EPDNEW_R12127
Type:single initiation site
Name:Eif4ebp2_1
Description:eukaryotic translation initiation factor 4E binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02031,072,485 - 31,072,545EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310824 AgrOrtholog
BioCyc Gene G2FUF-3722 BioCyc
Ensembl Genes ENSRNOG00000055391 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082448.2 UniProtKB/TrEMBL
  ENSRNOT00000117491.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5600115 IMAGE-MGC_LOAD
InterPro EIF4EBP UniProtKB/TrEMBL
KEGG Report rno:361845 UniProtKB/TrEMBL
MGC_CLONE MGC:124760 IMAGE-MGC_LOAD
NCBI Gene 361845 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam eIF_4EBP UniProtKB/TrEMBL
PhenoGen Eif4ebp2 PhenoGen
RatGTEx ENSRNOG00000055391 RatGTEx
UniProt A0A0G2K113 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0I3 ENTREZGENE, UniProtKB/TrEMBL
  A6K3Z8_RAT UniProtKB/TrEMBL
  Q497A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Eif4ebp2  eukaryotic translation initiation factor 4E binding protein 2  Eif4ebp2_predicted  eukaryotic translation initiation factor 4E binding protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Eif4ebp2_predicted  eukaryotic translation initiation factor 4E binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED