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Gene: Tchp (trichoplein, keratin filament binding) Rattus norvegicus

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Symbol:

Tchp

Name:

trichoplein, keratin filament binding

RGD ID:

1310813

Description:

Predicted to be involved in apoptotic process; negative regulation of cell growth; and negative regulation of cilium assembly. Predicted to be located in several cellular components, including apical cortex; centrosome; and desmosome. Predicted to be part of ciliary transition fiber. Predicted to be active in keratin filament. Orthologous to human TCHP (trichoplein keratin filament binding); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304547; RGD1310813; similar to hypothetical protein MGC10854; trichoplein keratin filament-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCHP (trichoplein keratin filament binding)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tchp (trichoplein, keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tchp (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCHP (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCHP (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tchp (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCHP (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCHP (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tchp (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tchp (trichoplein keratin filament binding)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MEDAG (mesenteric estrogen dependent adipogenesis)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tchp (trichoplein, keratin filament binding)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TCHP (trichoplein keratin filament binding)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tchp (trichoplein, keratin filament binding)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17230	Alliance	DIOPT (Hieranoid\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17230	Alliance	DIOPT (InParanoid\|OMA\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tchp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tchp	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,538,520 - 47,553,895 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	47,538,520 - 47,553,836 (-)	Ensembl				GRCr8
mRatBN7.2	12	41,877,888 - 41,893,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,877,889 - 41,892,427 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	43,045,433 - 43,059,937 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,659,011 - 43,673,515 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,719,503 - 42,734,009 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,638,278 - 47,653,602 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,638,274 - 47,653,638 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	49,431,571 - 49,446,355 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	43,165,998 - 43,180,692 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	43,493,579 - 43,506,170 (-)	NCBI		Celera
RGSC_v3.1	12	43,030,449 - 43,050,917 (-)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

dextran sulfate (ISO)

leflunomide (ISO)

methotrexate (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IBA,ISO)

cell projection organization (IEA)

negative regulation of cell growth (ISO)

negative regulation of cilium assembly (ISO)

Cellular Component

apical cortex (ISO)

centrosome (IEA,ISO)

ciliary transition fiber (IEA,ISO)

cilium (IEA)

cytoplasm (ISO)

cytosol (ISO)

desmosome (IEA,ISO)

keratin filament (IBA,IEA,ISO)

mitochondrion (ISO)

plasma membrane (ISO)

polymeric cytoskeletal fiber (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15731013	PMID:18931701	PMID:21325031	PMID:21399614	PMID:24947469	PMID:25270598

Genomics

Comparative Map Data

Tchp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,538,520 - 47,553,895 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	47,538,520 - 47,553,836 (-)	Ensembl				GRCr8
mRatBN7.2	12	41,877,888 - 41,893,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,877,889 - 41,892,427 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	43,045,433 - 43,059,937 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,659,011 - 43,673,515 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,719,503 - 42,734,009 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,638,278 - 47,653,602 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,638,274 - 47,653,638 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	49,431,571 - 49,446,355 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	43,165,998 - 43,180,692 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	43,493,579 - 43,506,170 (-)	NCBI		Celera
RGSC_v3.1	12	43,030,449 - 43,050,917 (-)	NCBI
Cytogenetic Map	12	q16	NCBI

TCHP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	109,880,667 - 109,918,069 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	109,900,264 - 109,983,841 (+)	Ensembl			hg38	GRCh38
GRCh37	12	110,338,079 - 110,355,874 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	108,822,706 - 108,840,251 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	109,962,427 - 109,980,222 (+)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	107,354,164 - 107,371,959 (+)	NCBI		HuRef
CHM1_1	12	110,305,866 - 110,323,661 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	109,856,359 - 109,893,762 (+)	NCBI		T2T-CHM13v2.0

Tchp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	114,845,813 - 114,860,388 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	114,845,821 - 114,860,388 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	114,707,779 - 114,722,327 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	114,707,760 - 114,722,327 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	115,157,788 - 115,172,336 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	114,968,873 - 114,983,326 (+)	NCBI		MGSCv36	mm8
Celera	5	111,805,995 - 111,820,543 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	55.99	NCBI

Tchp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	8,680,813 - 8,697,446 (-)	Ensembl
ChiLan1.0	NW_004955455	8,681,058 - 8,696,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCHP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	117,966,563 - 117,984,986 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	117,963,304 - 117,981,388 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	107,476,176 - 107,494,035 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	110,871,115 - 110,889,104 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	110,873,883 - 110,889,104 (+)	Ensembl			panPan2	panpan1.1

TCHP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	17,223,574 - 17,242,788 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	17,229,123 - 17,241,270 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	18,558,972 - 18,578,387 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	17,568,254 - 17,587,693 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	17,572,494 - 17,587,679 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	18,768,981 - 18,788,164 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	17,558,082 - 17,577,293 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	17,575,340 - 17,594,540 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tchp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	143,956,006 - 143,970,759 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936769	1,505,113 - 1,518,699 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936769	1,505,150 - 1,519,883 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCHP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	41,061,763 - 41,075,951 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	41,062,137 - 41,077,644 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	43,577,716 - 43,593,237 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCHP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	105,140,397 - 105,158,512 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	105,140,423 - 105,158,978 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	139,961,900 - 139,980,059 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tchp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	10,587,587 - 10,603,396 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tchp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	39,229,996 - 39,245,069 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	226
Count of miRNA genes:	154
Interacting mature miRNAs:	176
Transcripts:	ENSRNOT00000001577
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	44139558	52308831	Rat

Markers in Region

RH141586

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,878,005 - 41,878,206 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,638,396 - 47,638,596	NCBI	Rnor6.0
Rnor_5.0	12	49,431,689 - 49,431,889	UniSTS	Rnor5.0
RGSC_v3.4	12	43,166,115 - 43,166,315	UniSTS	RGSC3.4
Celera	12	43,493,696 - 43,493,896	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001577 ⟹ ENSRNOP00000001577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	47,538,520 - 47,553,836 (-)	Ensembl
mRatBN7.2 Ensembl	12	41,877,889 - 41,892,427 (-)	Ensembl
Rnor_6.0 Ensembl	12	47,638,274 - 47,653,638 (-)	Ensembl

RefSeq Acc Id:

NM_001191666 ⟹ NP_001178595

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,538,520 - 47,552,948 (-)	NCBI
mRatBN7.2	12	41,877,889 - 41,892,319 (-)	NCBI
Rnor_6.0	12	47,638,279 - 47,652,707 (-)	NCBI
Rnor_5.0	12	49,431,571 - 49,446,355 (-)	NCBI
Celera	12	43,493,579 - 43,506,170 (-)	NCBI

Sequence:

show sequence

ATGGCGCTCCCCACGCTGCCCTCTTATTGGTCCAACCGCAGACCCGCGAATATCCGCTACCGCC
AGCAACAGCAGGAGGACGAGTTTCGCCAGCAGTGGGAGCAGAACAGTCGCTATTTCAAGACGTG
GGACCTCCACAACTCCAAACAGACCGAATGGACCTCCAAGACCTCCTACCAGCGAAGCATGCAC
GCCCTCTACTGTGGCAAGATGGAGGAGGAGAGGAGGAAGAATCTGGAGGTCCGGCGGGAGAGAC
TCAGGAAGCTTATGCTGGAGGAGCAGGACTTGCTGGCCGAAGAGCTGGAGGAACTGAGGCTGAG
TATGAGCCTGCGGGAGCGAAGACTCCGGGAGCAGCACAGGGATCTGAAGTCAGCCCGAGAAGAA
CAAAGGAAACTGATGGCTGAACAACTTCTGTATGAACACTGGAGGAAGAACAACCCGAAACTTC
GAGAGATTGAGTTGGACCTTCACAAGAAGCATGTGATAAATTCCTGGGCAACACAGAAAGAAGA
AAAAAAACAGCAAGAAGCCACTGAGAAGCAGGAAAACAAGCAGTTTGAGAACGAGTATGCGGCC
GCCCGCCAGGAAGCTGAGGCCAGGCTGAAAGCCGAGGAGGAGAGGAAGCAGCTAGAGGGTCAGC
TGCAGGGCGAGGCTCTGCGCCAGCAGATGGAGGAGCTGAAGCAGAAGGAGATGGAGGCCACCAA
ACTGAAGAAGGAACAGGAGAACCTGCTGAAGCAGCACTGGGAACTGGAAAGGCTGGACGACGAA
AGGAAGCAGATGGCCATCGTCCGGCGCAAGACAGAGCTAGGGCGCATCTTGCGACATCAGTACA
ATGCGCAGCTCAACAGGCGCACCCAGCAGATCCAGGAGGAGCTGGAGGCAGATGGGCGGATCCT
GCAGGCACTGCTGGAGAAGGACAATGAGCTGCAGCAAGTCGAACTGGCCAGGCGGGAGCAAGCC
ATGGCCGATGCGGCCCAGATGAAGCAGGTCATCGAGGAGCAGCTGCAGCTGGAGAAGGCACGGG
AGGCAGAGCTGCAGCAGCTGCTGAGGGAAGAGGCCAAAGAGATGTGGGAAAAGAGAGAAGCAGA
GTGGGCTCGAGAGCAGAGTGCGCGGGACAAACTGATGAGCGAGGTTCTGACCGGCAGGCAGCAG
CAGATCCAAGAAAAGATTGAACAGAACCGGCGAGCACAAGAGGAGACCCTAAAATACAGGGAAG
AACTCATCAAGAGTCTCGAGGAGGGGAAGCAGTTAGCTCTGCGGGCAAAGGAAGAGAGTGAAGA
GCTGAAGTCAGCCAGGAAGCAGGAGCTGGAAGCCCAGGTTGCGGAGCGCCAGTTCCAGGAGTGG
GAAGCAGCCCGGCAGGAGGAGGAGGAAGAGAAGGAGGCCAAGAAGGCAGAACAGCTCTCCAACG
CTCGGCTGCAGCAGGAGGCGAGGACCATGGTGAAGAGGGGCTACAGGCCCAAGATTCATGGACA
CCTCAGGATTGCCTGGGACTGATGTTGAACACAGAGAAGCAAGCCGACGTGACAGAGCTCGCGG
CAGTTGTACAGTGTTGGTTCTGGCCAAGGCTCAGGGTGCTGCTGACCACTTGAGCCATGCCTGT
GAGGCGCATCATGGTCCATAGATGTCAGGATGCCATGGGTGTGCGGCCCTGCTGAGAGCCCTTC
CCTGCCATCCTCACCCAGACAGGCCTTACAGACTCATGTCTACAGTGCCACCCGAGGTCACACA
CTGCTTTATAAGTAGATTTTAGAGCTATTCGAAGAAGTCATATTCCATGACAGGATAGTAGGTT
CTCTTGTCTCCCCTGTAGTTGTCTGCTCTAGGGAGGACCAGGCAGAGGGAGGAGACAGCCTTTT
AGGTTTTACAGTTGCCGTTAGAAGTTAATCTATTGGAGGCAGACTCATAGGTCTTGGTGTAGTG
AGTTTCAGTTGTGAGCTGTGTAGCCCCAAGGATCACATGGTGTGTATTTCCGAAGAGTGGCAGT
CTGGAAAGACAGTGACAAAGGAGCCCTTGTTTGGAAGTGTTGTGAGAGCTACCCATAGGAGCTG
GGGGTGCTTAGTGTGGGGTACTTGACCTTTCACCTATGGTCCTCACCTCAGCTCTACACCATCA
AGAAGCAGAGTCCTATAGAGAGCACTTGAGCCCAACACGTGCCACCTCTCGAGTCCTCAGGGTC
ACTTGGTTGGCTGGCCCAATAGAAACAGGGTTGACAGTGACCTTTCGAGTGTGGAGAAGGCCTA
TCTATGTGCAGCCCCATGGGAGTTAGGTGCCCAGAGGAACACTGGCGAAATGGCAGGAGACTCA
GAATCACAGATGAGCGTGTCCCCACTGTTAGATCCCAATTCACCTCTGCAAGTGGCTCTGGGTC
CTGGTCGCGAGAGTTGGATTGTTATGACTTGTATCTCTCTGTAGCCTTCATTTCGTCCCTGTAT
TCAAGATTCTGCCAACTTTGCTGACTATAGGGTGTTTGCTCTGGTCATGGGAACCCAGAGTTAG
ACGAGCCTGGGTTTGAGGGCTGCATTGCTTCTCAGTCTGTTTCATTTCCTGCCTTGGTTCTCGG
ATGCGGCCCCAGCACTGTTTACCTCACACACTTTTGAGCACTCGCCCTTTTCAAATGCACACTG
ACTGTGAAGTAAAGCTCTGTTTCACCTCA

hide sequence

RefSeq Acc Id:

XM_006249451 ⟹ XP_006249513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,538,520 - 47,553,895 (-)	NCBI
mRatBN7.2	12	41,877,888 - 41,893,264 (-)	NCBI
Rnor_6.0	12	47,638,278 - 47,653,602 (-)	NCBI
Rnor_5.0	12	49,431,571 - 49,446,355 (-)	NCBI

Sequence:

show sequence

GCGGGACCCTCGGAGCCTGCGGGCGCGAGATCGAGCTAAGGCCGGCAACTCTTCTCCGCGAACC
TCCGGCGCCAGGCGCAGGAGTCAGAGATGGCGCTCCCCACGCTGCCCTCTTATTGGTCCAACCG
CAGACCCGCGAATATCCGCTACCGCCAGCAACAGCAGGAGGACGAGTTTCGCCAGCAGTGGGAG
CAGAACAGTCGCTATTTCAAGACGTGGGACCTCCACAACTCCAAACAGACCGAATGGACCTCCA
AGACCTCCTACCAGCGAAGCATGCACGCCCTCTACTGTGGCAAGATGGAGGAGGAGAGGAGGAA
GAATCTGGAGGTCCGGCGGGAGAGACTCAGGAAGCTTATGCTGGAGGAGCAGGACTTGCTGGCC
GAAGAGCTGGAGGAACTGAGGCTGAGTATGAGCCTGCGGGAGCGAAGACTCCGGGAGCAGCACA
GGGATCTGAAGTCAGCCCGAGAAGAACAAAGGAAACTGATGGCTGAACAACTTCTGTATGAACA
CTGGAGGAAGAACAACCCGAAACTTCGAGAGATTGAGTTGGACCTTCACAAGAAGCATGTGATA
AATTCCTGGGCAACACAGAAAGAAGAAAAAAAACAGCAAGAAGCCACTGAGAAGCAGGAAAACA
AGCAGTTTGAGAACGAGTATGCGGCCGCCCGCCAGGAAGCTGAGGCCAGGCTGAAAGCCGAGGA
GGAGAGGAAGCAGCTAGAGGGTCAGCTGCAGGGCGAGGCTCTGCGCCAGCAGATGGAGGAGCTG
AAGCAGAAGGAGATGGAGGCCACCAAACTGAAGAAGGAACAGGAGAACCTGCTGAAGCAGCACT
GGGAACTGGAAAGGCTGGACGACGAAAGGAAGCAGATGGCCATCGTCCGGCGCAAGACAGAGCT
AGGGCGCATCTTGCGACATCAGTACAATGCGCAGCTCAACAGGCGCACCCAGCAGATCCAGGAG
GAGCTGGAGGCAGATGGGCGGATCCTGCAGGCACTGCTGGAGAAGGACAATGAGCTGCAGCAAG
TCGAACTGGCCAGGCGGGAGCAAGCCATGGCCGATGCGGCCCAGATGAAGCAGGTCATCGAGGA
GCAGCTGCAGCTGGAGAAGGCACGGGAGGCAGAGCTGCAGCAGCTGCTGAGGGAAGAGGCCAAA
GAGATGTGGGAAAAGAGAGAAGCAGAGTGGGCTCGAGAGCAGAGTGCGCGGGACAAACTGATGA
GCGAGGTTCTGACCGGCAGGCAGCAGCAGATCCAAGAAAAGATTGAACAGAACCGGCGAGCACA
AGAGGAGACCCTAAAATACAGGGAAGAACTCATCAAGAGTCTCGAGGAGGGGAAGCAGTTAGCT
CTGCGGGCAAAGGAAGAGAGTGAAGAGCTGAAGTCAGCCAGGAAGCAGGAGCTGGAAGCCCAGG
TTGCGGAGCGCCAGTTCCAGGAGTGGGAAGCAGCCCGGCAGGAGGAGGAGGAAGAGAAGGAGGC
CAAGAAGGCAGAACAGCTCTCCAACGCTCGGCTGCAGCAGGAGGCGAGGACCATGGTGAAGAGG
GGCTACAGGCCCAAGATTCATGGACACCTCAGGATTGCCTGGGACTGATGTTGAACACAGAGAA
GCAAGCCGACGTGACAGAGCTCGCGGCAGTTGTACAGTGTTGGTTCTGGCCAAGGCTCAGGGTG
CTGCTGACCACTTGAGCCATGCCTGTGAGGCGCATCATGGTCCATAGATGTCAGGATGCCATGG
GTGTGCGGCCCTGCTGAGAGCCCTTCCCTGCCATCCTCACCCAGACAGGCCTTACAGACTCATG
TCTACAGTGCCACCCGAGGTCACACACTGCTTTATAAGTAGATTTTAGAGCTATTCGAAGAAGT
CATATTCCATGACAGGATAGTAGGTTCTCTTGTCTCCCCTGTAGTTGTCTGCTCTAGGGAGGAC
CAGGCAGAGGGAGGAGACAGCCTTTTAGGTTTTACAGTTGCCGTTAGAAGTTAATCTATTGGAG
GCAGACTCATAGGTCTTGGTGTAGTGAGTTTCAGTTGTGAGCTGTGTAGCCCCAAGGATCACAT
GGTGTGTATTTCCGAAGAGTGGCAGTCTGGAAAGACAGTGACAAAGGAGCCCTTGTTTGGAAGT
GTTGTGAGAGCTACCCATAGGAGCTGGGGGTGCTTAGTGTGGGGTACTTGACCTTTCACCTATG
GTCCTCACCTCAGCTCTACACCATCAAGAAGCAGAGTCCTATAGAGAGCACTTGAGCCCAACAC
GTGCCACCTCTCGAGTCCTCAGGGTCACTTGGTTGGCTGGCCCAATAGAAACAGGGTTGACAGT
GACCTTTCGAGTGTGGAGAAGGCCTATCTATGTGCAGCCCCATGGGAGTTAGGTGCCCAGAGGA
ACACTGGCGAAATGGCAGGAGACTCAGAATCACAGATGAGCGTGTCCCCACTGTTAGATCCCAA
TTCACCTCTGCAAGTGGCTCTGGGTCCTGGTCGCGAGAGTTGGATTGTTATGACTTGTATCTCT
CTGTAGCCTTCATTTCGTCCCTGTATTCAAGATTCTGCCAACTTTGCTGACTATAGGGTGTTTG
CTCTGGTCATGGGAACCCAGAGTTAGACGAGCCTGGGTTTGAGGGCTGCATTGCTTCTCAGTCT
GTTTCATTTCCTGCCTTGGTTCTCGGATGCGGCCCCAGCACTGTTTACCTCACACACTTTTGAG
CACTCGCCCTTTTCAAATGCACACTGACTGTGAAGTAAAGCTCTGTTTCACCTCAG

hide sequence

RefSeq Acc Id:

XM_006249452 ⟹ XP_006249514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,538,520 - 47,553,834 (-)	NCBI
mRatBN7.2	12	41,877,888 - 41,893,203 (-)	NCBI
Rnor_6.0	12	47,638,278 - 47,653,540 (-)	NCBI
Rnor_5.0	12	49,431,571 - 49,446,355 (-)	NCBI

Sequence:

show sequence

CCTCCGGCGCCAGGCGCAGGAGTCAGAGGTTAGGCTGGGCCGAGGGGCAGGACGAGGCGTCGCG
GTCGCCGCGGGACCTGTAAAAAGTTATGGCGCTCCCCACGCTGCCCTCTTATTGGTCCAACCGC
AGACCCGCGAATATCCGCTACCGCCAGCAACAGCAGGAGGACGAGTTTCGCCAGCAGTGGGAGC
AGAACAGTCGCTATTTCAAGACGTGGGACCTCCACAACTCCAAACAGACCGAATGGACCTCCAA
GACCTCCTACCAGCGAAGCATGCACGCCCTCTACTGTGGCAAGATGGAGGAGGAGAGGAGGAAG
AATCTGGAGGTCCGGCGGGAGAGACTCAGGAAGCTTATGCTGGAGGAGCAGGACTTGCTGGCCG
AAGAGCTGGAGGAACTGAGGCTGAGTATGAGCCTGCGGGAGCGAAGACTCCGGGAGCAGCACAG
GGATCTGAAGTCAGCCCGAGAAGAACAAAGGAAACTGATGGCTGAACAACTTCTGTATGAACAC
TGGAGGAAGAACAACCCGAAACTTCGAGAGATTGAGTTGGACCTTCACAAGAAGCATGTGATAA
ATTCCTGGGCAACACAGAAAGAAGAAAAAAAACAGCAAGAAGCCACTGAGAAGCAGGAAAACAA
GCAGTTTGAGAACGAGTATGCGGCCGCCCGCCAGGAAGCTGAGGCCAGGCTGAAAGCCGAGGAG
GAGAGGAAGCAGCTAGAGGGTCAGCTGCAGGGCGAGGCTCTGCGCCAGCAGATGGAGGAGCTGA
AGCAGAAGGAGATGGAGGCCACCAAACTGAAGAAGGAACAGGAGAACCTGCTGAAGCAGCACTG
GGAACTGGAAAGGCTGGACGACGAAAGGAAGCAGATGGCCATCGTCCGGCGCAAGACAGAGCTA
GGGCGCATCTTGCGACATCAGTACAATGCGCAGCTCAACAGGCGCACCCAGCAGATCCAGGAGG
AGCTGGAGGCAGATGGGCGGATCCTGCAGGCACTGCTGGAGAAGGACAATGAGCTGCAGCAAGT
CGAACTGGCCAGGCGGGAGCAAGCCATGGCCGATGCGGCCCAGATGAAGCAGGTCATCGAGGAG
CAGCTGCAGCTGGAGAAGGCACGGGAGGCAGAGCTGCAGCAGCTGCTGAGGGAAGAGGCCAAAG
AGATGTGGGAAAAGAGAGAAGCAGAGTGGGCTCGAGAGCAGAGTGCGCGGGACAAACTGATGAG
CGAGGTTCTGACCGGCAGGCAGCAGCAGATCCAAGAAAAGATTGAACAGAACCGGCGAGCACAA
GAGGAGACCCTAAAATACAGGGAAGAACTCATCAAGAGTCTCGAGGAGGGGAAGCAGTTAGCTC
TGCGGGCAAAGGAAGAGAGTGAAGAGCTGAAGTCAGCCAGGAAGCAGGAGCTGGAAGCCCAGGT
TGCGGAGCGCCAGTTCCAGGAGTGGGAAGCAGCCCGGCAGGAGGAGGAGGAAGAGAAGGAGGCC
AAGAAGGCAGAACAGCTCTCCAACGCTCGGCTGCAGCAGGAGGCGAGGACCATGGTGAAGAGGG
GCTACAGGCCCAAGATTCATGGACACCTCAGGATTGCCTGGGACTGATGTTGAACACAGAGAAG
CAAGCCGACGTGACAGAGCTCGCGGCAGTTGTACAGTGTTGGTTCTGGCCAAGGCTCAGGGTGC
TGCTGACCACTTGAGCCATGCCTGTGAGGCGCATCATGGTCCATAGATGTCAGGATGCCATGGG
TGTGCGGCCCTGCTGAGAGCCCTTCCCTGCCATCCTCACCCAGACAGGCCTTACAGACTCATGT
CTACAGTGCCACCCGAGGTCACACACTGCTTTATAAGTAGATTTTAGAGCTATTCGAAGAAGTC
ATATTCCATGACAGGATAGTAGGTTCTCTTGTCTCCCCTGTAGTTGTCTGCTCTAGGGAGGACC
AGGCAGAGGGAGGAGACAGCCTTTTAGGTTTTACAGTTGCCGTTAGAAGTTAATCTATTGGAGG
CAGACTCATAGGTCTTGGTGTAGTGAGTTTCAGTTGTGAGCTGTGTAGCCCCAAGGATCACATG
GTGTGTATTTCCGAAGAGTGGCAGTCTGGAAAGACAGTGACAAAGGAGCCCTTGTTTGGAAGTG
TTGTGAGAGCTACCCATAGGAGCTGGGGGTGCTTAGTGTGGGGTACTTGACCTTTCACCTATGG
TCCTCACCTCAGCTCTACACCATCAAGAAGCAGAGTCCTATAGAGAGCACTTGAGCCCAACACG
TGCCACCTCTCGAGTCCTCAGGGTCACTTGGTTGGCTGGCCCAATAGAAACAGGGTTGACAGTG
ACCTTTCGAGTGTGGAGAAGGCCTATCTATGTGCAGCCCCATGGGAGTTAGGTGCCCAGAGGAA
CACTGGCGAAATGGCAGGAGACTCAGAATCACAGATGAGCGTGTCCCCACTGTTAGATCCCAAT
TCACCTCTGCAAGTGGCTCTGGGTCCTGGTCGCGAGAGTTGGATTGTTATGACTTGTATCTCTC
TGTAGCCTTCATTTCGTCCCTGTATTCAAGATTCTGCCAACTTTGCTGACTATAGGGTGTTTGC
TCTGGTCATGGGAACCCAGAGTTAGACGAGCCTGGGTTTGAGGGCTGCATTGCTTCTCAGTCTG
TTTCATTTCCTGCCTTGGTTCTCGGATGCGGCCCCAGCACTGTTTACCTCACACACTTTTGAGC
ACTCGCCCTTTTCAAATGCACACTGACTGTGAAGTAAAGCTCTGTTTCACCTCAG

hide sequence

RefSeq Acc Id:

XM_039089503 ⟹ XP_038945431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,538,520 - 47,552,898 (-)	NCBI
mRatBN7.2	12	41,877,888 - 41,892,268 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178595	(Get FASTA)	NCBI Sequence Viewer
	XP_006249513	(Get FASTA)	NCBI Sequence Viewer
	XP_006249514	(Get FASTA)	NCBI Sequence Viewer
	XP_038945431	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13928	(Get FASTA)	NCBI Sequence Viewer
	EDM13929	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001577
	ENSRNOP00000001577.6

RefSeq Acc Id:

NP_001178595 ⟸ NM_001191666

- UniProtKB:

D3ZY42 (UniProtKB/TrEMBL), A6J1Z0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALPTLPSYWSNRRPANIRYRQQQQEDEFRQQWEQNSRYFKTWDLHNSKQTEWTSKTSYQRSMH
ALYCGKMEEERRKNLEVRRERLRKLMLEEQDLLAEELEELRLSMSLRERRLREQHRDLKSAREE
QRKLMAEQLLYEHWRKNNPKLREIELDLHKKHVINSWATQKEEKKQQEATEKQENKQFENEYAA
ARQEAEARLKAEEERKQLEGQLQGEALRQQMEELKQKEMEATKLKKEQENLLKQHWELERLDDE
RKQMAIVRRKTELGRILRHQYNAQLNRRTQQIQEELEADGRILQALLEKDNELQQVELARREQA
MADAAQMKQVIEEQLQLEKAREAELQQLLREEAKEMWEKREAEWAREQSARDKLMSEVLTGRQQ
QIQEKIEQNRRAQEETLKYREELIKSLEEGKQLALRAKEESEELKSARKQELEAQVAERQFQEW
EAARQEEEEEKEAKKAEQLSNARLQQEARTMVKRGYRPKIHGHLRIAWD

hide sequence

RefSeq Acc Id:

XP_006249513 ⟸ XM_006249451

- Peptide Label:

isoform X1

- Sequence:

show sequence

MALPTLPSYWSNRRPANIRYRQQQQEDEFRQQWEQNSRYFKTWDLHNSKQTEWTSKTSYQRSMH
ALYCGKMEEERRKNLEVRRERLRKLMLEEQDLLAEELEELRLSMSLRERRLREQHRDLKSAREE
QRKLMAEQLLYEHWRKNNPKLREIELDLHKKHVINSWATQKEEKKQQEATEKQENKQFENEYAA
ARQEAEARLKAEEERKQLEGQLQGEALRQQMEELKQKEMEATKLKKEQENLLKQHWELERLDDE
RKQMAIVRRKTELGRILRHQYNAQLNRRTQQIQEELEADGRILQALLEKDNELQQVELARREQA
MADAAQMKQVIEEQLQLEKAREAELQQLLREEAKEMWEKREAEWAREQSARDKLMSEVLTGRQQ
QIQEKIEQNRRAQEETLKYREELIKSLEEGKQLALRAKEESEELKSARKQELEAQVAERQFQEW
EAARQEEEEEKEAKKAEQLSNARLQQEARTMVKRGYRPKIHGHLRIAWD

hide sequence

RefSeq Acc Id:	XP_006249514 ⟸ XM_006249452
- Peptide Label:	isoform X1
- UniProtKB:	D3ZY42 (UniProtKB/TrEMBL), A6J1Z0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALPTLPSYWSNRRPANIRYRQQQQEDEFRQQWEQNSRYFKTWDLHNSKQTEWTSKTSYQRSMH ALYCGKMEEERRKNLEVRRERLRKLMLEEQDLLAEELEELRLSMSLRERRLREQHRDLKSAREE QRKLMAEQLLYEHWRKNNPKLREIELDLHKKHVINSWATQKEEKKQQEATEKQENKQFENEYAA ARQEAEARLKAEEERKQLEGQLQGEALRQQMEELKQKEMEATKLKKEQENLLKQHWELERLDDE RKQMAIVRRKTELGRILRHQYNAQLNRRTQQIQEELEADGRILQALLEKDNELQQVELARREQA MADAAQMKQVIEEQLQLEKAREAELQQLLREEAKEMWEKREAEWAREQSARDKLMSEVLTGRQQ QIQEKIEQNRRAQEETLKYREELIKSLEEGKQLALRAKEESEELKSARKQELEAQVAERQFQEW EAARQEEEEEKEAKKAEQLSNARLQQEARTMVKRGYRPKIHGHLRIAWD hide sequence

Ensembl Acc Id:

ENSRNOP00000001577 ⟸ ENSRNOT00000001577

RefSeq Acc Id:	XP_038945431 ⟸ XM_039089503
- Peptide Label:	isoform X2
- UniProtKB:	A6J1Z0 (UniProtKB/TrEMBL)

Protein Domains

Trichohyalin-plectin-homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZY42-F1-model_v2	AlphaFold	D3ZY42	1-497	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698708

Promoter ID:

EPDNEW_R9233

Type:

initiation region

Name:

Tchp_1

Description:

trichoplein, keratin filament binding

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	47,653,661 - 47,653,721	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310813	AgrOrtholog
BioCyc Gene	G2FUF-18958	BioCyc
Ensembl Genes	ENSRNOG00000001191	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001577	ENTREZGENE
	ENSRNOT00000001577.9	UniProtKB/TrEMBL
InterPro	CFAP53/TCHP	UniProtKB/TrEMBL
	TPH_dom	UniProtKB/TrEMBL
KEGG Report	rno:304547	UniProtKB/TrEMBL
NCBI Gene	304547	ENTREZGENE
PANTHER	PTHR31183	UniProtKB/TrEMBL
	PTHR31183:SF2	UniProtKB/TrEMBL
Pfam	TPH	UniProtKB/TrEMBL
PhenoGen	Tchp	PhenoGen
RatGTEx	ENSRNOG00000001191	RatGTEx
UniProt	A6J1Z0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZY42	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tchp	trichoplein, keratin filament binding	Tchp_predicted	trichoplein, keratin filament binding (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tchp_predicted	trichoplein, keratin filament binding (predicted)	RGD1310813_predicted	similar to hypothetical protein MGC10854 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1310813_predicted	similar to hypothetical protein MGC10854 (predicted)	LOC304547_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304547_predicted	similar to hypothetical protein MGC10854 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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