Advanced Search (OLGA)

Gene: Ankrd42 (ankyrin repeat domain 42) Rattus norvegicus

Analyze

Symbol:

Ankrd42

Name:

ankyrin repeat domain 42

RGD ID:

1310789

Description:

Predicted to enable NF-kappaB binding activity and cyclin-dependent protein serine/threonine kinase inhibitor activity. Predicted to act upstream of or within positive regulation of cytokine production involved in inflammatory response. Predicted to be active in nucleus. Orthologous to human ANKRD42 (ankyrin repeat domain 42); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat domain-containing protein 42; LOC293117; RGD1310789; similar to RIKEN cDNA 4933417L02

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANKRD42 (ankyrin repeat domain 42)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Ankrd42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ankrd42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANKRD42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANKRD42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ankrd42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANKRD42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANKRD42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ankrd42 (ankyrin repeat domain 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ankrd42 (ankyrin repeat domain 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ankrd42 (ankyrin repeat domain 42)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ANKRD42 (ankyrin repeat domain 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ANKRD42 (ankyrin repeat domain 42)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ankrd42	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	156,060,516 - 156,103,517 (-)	Ensembl				GRCr8
mRatBN7.2	1	146,648,080 - 146,691,086 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	146,648,080 - 146,691,108 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	154,598,416 - 154,641,445 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	161,778,625 - 161,821,654 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	154,652,041 - 154,695,070 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	157,419,117 - 157,461,588 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	157,419,123 - 157,461,588 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	163,663,265 - 163,705,736 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	149,425,862 - 149,468,863 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	144,827,522 - 144,870,651 (-)	NCBI		Celera
RGSC_v3.1	1	149,504,267 - 149,547,255 (-)	NCBI
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

clofibrate (ISO)

gallic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indole-3-methanol (EXP)

ketamine (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP,ISO)

methimazole (EXP)

methylisothiazolinone (ISO)

ozone (ISO)

paracetamol (EXP)

pentanal (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triptonide (ISO)

urethane (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

obsolete positive regulation of DNA-binding transcription factor activity (ISO)

obsolete positive regulation of NF-kappaB transcription factor activity (ISO)

positive regulation of cytokine production involved in inflammatory response (ISO)

Cellular Component

nucleus (IBA,ISO)

Molecular Function

cyclin-dependent protein serine/threonine kinase inhibitor activity (IBA)

NF-kappaB binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632090	PMID:20547855

Genomics

Comparative Map Data

Ankrd42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	156,060,516 - 156,103,517 (-)	Ensembl				GRCr8
mRatBN7.2	1	146,648,080 - 146,691,086 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	146,648,080 - 146,691,108 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	154,598,416 - 154,641,445 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	161,778,625 - 161,821,654 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	154,652,041 - 154,695,070 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	157,419,117 - 157,461,588 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	157,419,123 - 157,461,588 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	163,663,265 - 163,705,736 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	149,425,862 - 149,468,863 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	144,827,522 - 144,870,651 (-)	NCBI		Celera
RGSC_v3.1	1	149,504,267 - 149,547,255 (-)	NCBI
Cytogenetic Map	1	q32	NCBI

ANKRD42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	83,193,712 - 83,264,282 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	83,193,712 - 83,260,694 (+)	Ensembl			hg38	GRCh38
GRCh37	11	82,904,754 - 82,967,141 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	82,582,939 - 82,637,661 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	80,214,956 - 80,269,666 (+)	NCBI		Celera
Cytogenetic Map	11	q14.1	NCBI
HuRef	11	79,202,766 - 79,257,465 (+)	NCBI		HuRef
CHM1_1	11	82,789,434 - 82,844,156 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	83,130,185 - 83,200,735 (+)	NCBI		T2T-CHM13v2.0

Ankrd42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	92,230,922 - 92,286,348 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	92,230,931 - 92,286,350 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	92,584,183 - 92,637,142 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	92,581,723 - 92,637,142 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	99,732,693 - 99,785,652 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	92,484,062 - 92,512,227 (-)	NCBI		MGSCv36	mm8
Celera	7	94,030,969 - 94,031,333 (+)	NCBI		Celera
Celera	7	89,881,749 - 89,928,667 (-)	NCBI		Celera
Cytogenetic Map	7	E1	NCBI
cM Map	7	51.52	NCBI

Ankrd42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	9,351,512 - 9,396,146 (-)	Ensembl
ChiLan1.0	NW_004955414	9,351,512 - 9,395,937 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANKRD42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	84,124,005 - 84,193,556 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	85,174,751 - 85,244,208 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	78,257,158 - 78,326,216 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	81,868,855 - 81,936,858 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	81,868,855 - 81,932,583 (+)	Ensembl			panPan2	panpan1.1

ANKRD42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	15,920,322 - 15,998,439 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	15,920,661 - 15,997,611 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	15,797,113 - 15,874,375 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	16,096,287 - 16,184,525 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	16,114,429 - 16,184,510 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	15,882,735 - 15,960,397 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	15,951,549 - 16,039,879 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	16,022,525 - 16,109,919 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ankrd42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	69,740,283 - 69,930,888 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	11,340,435 - 11,528,863 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	11,340,461 - 11,401,730 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKRD42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	17,334,063 - 17,410,297 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	17,334,050 - 17,416,704 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	19,247,975 - 19,332,422 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKRD42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	74,388,272 - 74,569,529 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	51,114,350 - 51,310,181 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankrd42
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	108,551,548 - 108,603,349 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ankrd42
261 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	23
Count of miRNA genes:	20
Interacting mature miRNAs:	22
Transcripts:	ENSRNOT00000068402
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	131179947	176179947	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	137611478	182611478	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	153679879	198679879	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	132760429	191848948	Rat
631684	Bp117	Blood pressure QTL 117	8.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	120082258	165082258	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	112521556	157521556	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	153679879	205813246	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
8694166	Bw147	Body weight QTL 147	6.83	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	1	153788989	198788989	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	142582336	182383862	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	141173126	169168317	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	155359438	194575574	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	140833106	185833106	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	131243790	176243790	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	129182274	174182274	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	132760429	191848948	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	176289080	Rat
634315	Niddm45	Non-insulin dependent diabetes mellitus QTL 45	7.16		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	153680016	182383862	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	153680016	183564652	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	128019551	173019551	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	178317588	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	112521556	157521556	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	111949780	160574007	Rat
1576310	Schws2	Schwannoma susceptibility QTL 2		0.029	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	1	153788989	198788989	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	180021436	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	191190115	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	140915717	185915717	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	132760429	191848948	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
7411599	Foco11	Food consumption QTL 11	18.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	1	153788989	198788989	Rat

Markers in Region

BF399194

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	156,060,633 - 156,060,833 (+)	Marker Load Pipeline
mRatBN7.2	1	146,648,197 - 146,648,397 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	157,419,235 - 157,419,434	NCBI	Rnor6.0
Rnor_5.0	1	163,663,383 - 163,663,582	UniSTS	Rnor5.0
RGSC_v3.4	1	149,425,980 - 149,426,179	UniSTS	RGSC3.4
Celera	1	144,827,640 - 144,827,839	UniSTS
RH 3.4 Map	1	1131.6	UniSTS
Cytogenetic Map	1	q32	UniSTS

BE108642

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	146,647,636 - 146,647,815 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	157,418,476 - 157,418,654	NCBI	Rnor6.0
Rnor_5.0	1	163,662,624 - 163,662,802	UniSTS	Rnor5.0
RGSC_v3.4	1	149,425,419 - 149,425,597	UniSTS	RGSC3.4
Celera	1	144,827,079 - 144,827,257	UniSTS
RH 3.4 Map	1	1131.3	UniSTS
Cytogenetic Map	1	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	91	59	6	355	191	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068402 ⟹ ENSRNOP00000062031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	156,060,516 - 156,103,517 (-)	Ensembl
mRatBN7.2 Ensembl	1	146,648,080 - 146,691,108 (-)	Ensembl
Rnor_6.0 Ensembl	1	157,419,123 - 157,461,588 (-)	Ensembl

RefSeq Acc Id:

NM_001135013 ⟹ NP_001128485

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,103,517 (-)	NCBI
mRatBN7.2	1	146,648,080 - 146,691,081 (-)	NCBI
Rnor_6.0	1	157,419,117 - 157,461,588 (-)	NCBI
Rnor_5.0	1	163,663,265 - 163,705,736 (-)	NCBI
RGSC_v3.4	1	149,425,862 - 149,468,863 (-)	RGD
Celera	1	144,827,522 - 144,870,651 (-)	RGD

Sequence:

show sequence

CGCCGCCACGCCCTCCAGCCTGCAGGAACTGAGACTCTGGAAAACAACTCTGAGCAGAGCGTTC
CGGCCGACGGCGGTTGCCGTCACAACCACCAGCGTGCCCCGGAGACCGGAGACTGCGGCCTCCG
CGCCAGCCGCCGTGCGTGTGCGGTCCGCGGTCCGCACGGCTACCTCGGCTCCGGGTCTAGGGAG
AAGGTCCTGGAAAAGCAGGGATTCTGTTGCCACAACCCCAGAGAAAGAAACCTAGAAGGAGGGA
ACCGCCACACCAAGATCTCTTCAGTAAGAGTAAGTGAGGACGGCGGCGTTTCCCGAAGGGACTC
GAGAAGACCCAGTGAAGACCTAAGGCAGCACCGCTGCGTCTCTCAGGAGAGAATTAGGGAACAG
GATGGCTACCTGCAGAGCAGCCCATGGGTAGCTGTGAGGGGCGACAGTGGCCAACGCAGTGGCG
ACGCGAGCCTAGGTGAAGTCGCTGGCTTGCATCCCTGCGACTTGAGGGCAACCGTCAACAAAGA
CGCCTGGGTGGACGTCCCTGAAACTCGAGGGCTCCGAACCAGTGACTCCGGGATCCGAGACAGT
GAGGACTGCAGCGGTTCTTGGGAAGGAGCAAGTGTCGATGCCAGCCACTGCCTCAGTTCTTGGG
AAGGAGTAAGTGATGAAAGGAGTTACGAGGCCAGAGACTCTTCTAGGGTGAACATCAGTGAAGA
CTCCAGCCACCGGCTCCGTGGCTTATGGGAGAGAGAAAGCGAAGAGGATTCCCGCTTAAGGGGC
TCTTGGGAGAGAAGGGAGGATCGTGGATCACGCACCAGCGACGAGGAGTCCAGTTCTTACAGCA
GTGGTCCATGCGTGGGAGCAAGTGAAGACCAGCTCAGCAGCAGGGACTTGGGCTCCACTCCTCC
CCAGAGTCCAAGTCCAAGGATGAAGGACCACACTACGCCTGGTGTGTCTAATCCAGGTCCCTCC
AAGTCCTGTAGGGAGACTGCAGACTCAAGTTCCAGGAACAAGGTGCCCTTTGGTAGCATACATG
ACGCAGTACGGGCTGGCGACGTCAAGCAGCTTTCAGACATCGTGGAACGTGGAGCCAACGTTAA
TGAAGTGGATGCGCTCCATCAGTTTACTCCTTTACATTGGGCTGCACATTCTGGAAGTTTAGAG
TGCCTTCACTGGCTACTCTGGAATGGTGCGGATGCCACACAGACAACTACAAGGGGATGGACAG
CAGCTCACGTAGCTGCCATCCGGGGTCAGGATGCCTGCTTGCAGGCTCTTATAATCAATGGAGC
CAACCTAGCAACTCAAGATGACCGTGGATGCACTCCAGTACACCTTGCTGCCACTCACGGACAC
TCTTTTTCTTTACAAGTAATGCTGCGAAGTGGAGTGGATCCCAGCGTGACTGACAAGAGAGAAT
GGAGACCTGTGCATTATGCAGCTTTTCATGGGCGGCTTGGCTGCTTGCAACTTCTTGTCAAATG
GGGATGTGGCATAGAAGACGTGGACTACAATGGAAACCTTCCCGTTCACTTAGCAGCCATGGAA
GGCCACCTCCATTGTTTTAAGTTCCTACTGAGTAGAGTGAACAGTGCAGTACAAGCCTTGAAAG
CCTTCAATGATAATGGAGAAAATGTACTGGACCTGGCACATCGGTTCTTAAAACAGAACATTGT
ACAGTTTATTCAGGGGGCTGAGTATGAAGGAAGCCATTTAGATGATCAGGATGATTTAGCCTTT
CCAGGCCATGTGGCTGCCTTTAAGGGTGATTTAGAAATGCTTAAGAAACTGATAGACGATGGGG
TAATTAATCTGAATGAACGTGATGAAAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGG
CCACATCGATTGTTTGCAGTGGTTAGTTGAAATGGGAGCTGACAGCAATATTACCAACAAAGCA
GGAGAGAGACCCAGCGATGTGGCTAAGAGATTTGCCCATTTGGCAGCAGTGAAACTCTTAGAGG
GGCTACAGAAATATGAGATAGATGACATTGAAGGTGATAAAAATCATATAAGTTTTTTCATAAG
GCATGGTGTTGAAGGAAGCACCGATGCCAAGGATGACTTAAGTCTGAGTGAATCAGACAAAGCG
AACGCCAGAATGAGAGCTCATAAGAAAATTGTAGAATTGAGACAACTTCTGGAAATCGCTGAGA
GCAACTTTAAACACTTGGGTGGGATAACAGAAGAGGATCTAAAGCAGAAGAAAGAACTACTGGA
GTCTAAGAAGACCATCACAGAGCTGCAGGAGCAGCTGGCCTATGAGCGACTCCGCAGGGAGAAG
TTAGAGTGTCAACTGGATGAGTACCGAGTGGAAGTGAATCAACTCAAGGAAGCGCTGGAGAAAA
TCCAGGTCCCCAGTGCTGAGGCTATGGAAGATGACTCCTGTGAATATAGCAAAGAGAAGAGGCG
AATGAAAAAAAAAAACTCTCCTGGGGGCATGTTTGTGAGAAGGTTCTAATCAGTGCAGTAAGGT
TAAATAAAGCCTTGATTTTCCTTCACTTTAGAGGTATGTGAATAGATAGAAATCCTTCAGTTCT
GAAGGTGAAAATGTTATACATCAAACAGACTTAAAAATTCCATGGACTTAGGATATTTTTTATA
TGCATATATATGCAAGCCAACATCTATGAGAAATAATTTTGCAAGTATTCATATAAACTGTGAA
CTATGAGATGGTATAATCTAATAGTCAAAGGAAATCCAATTCTAGATAATAAAATTATTAAAAT
GATACTATGGCTTCACAATAAA

hide sequence

RefSeq Acc Id:

XM_017588945 ⟹ XP_017444434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI
mRatBN7.2	1	146,648,084 - 146,691,086 (-)	NCBI
Rnor_6.0	1	157,419,117 - 157,461,584 (-)	NCBI

Sequence:

show sequence

GCCACGCCCTCCAGCCTGCAGGAACTGAGACTCTGGAAAACAACTCTGAGCAGAGCGTTCCGGC
CGACGGCGGTTGCCGTCACAACCACCAGCGTGCCCCGGAGACCGGAGACTGCGGCCTCCGCGCC
AGCCGCCGTGCGTGTGCGGTCCGCGGTCCGCACGGCTACCTCGGCTCCGGGTCTAGGGAGAAGG
TCCTGGAAAAGCAGGGATTCTGTTGCCACAACCCCAGAGAAAGAAACCTAGAAGGAGGGAACCG
CCACACCAAGATCTCTTCAGTAAGAGTAAGTGAGGACGGCGGCGTTTCCCGAAGGGACTCGAGA
AGACCCAGTGAAGACCTAAGGCAGCACCGCTGCGTCTCTCAGGAGAGAATTAGGGAACAGGATG
GCTACCTGCAGAGCAGCCCATGGGTAGCTGTGAGGGGCGACAGTGGCCAACGCAGTGGCGACGC
GAGCCTAGGTGAAGTCGCTGGCTTGCATCCCTGCGACTTGAGGGCAACCGTCAACAAAGACGCC
TGGGTGGACGTCCCTGAAACTCGAGGGCTCCGAACCAGTGACTCCGGGATCCGAGACAGTGAGG
ACTGCAGCGGTTCTTGGGAAGGAGCAAGTGTCGATGCCAGCCACTGCCTCAGTTCTTGGGAAGG
AGTAAGTGATGAAAGGAGTTACGAGGCCAGAGACTCTTCTAGGGTGAACATCAGTGAAGACTCC
AGCCACCGGCTCCGTGGCTTATGGGAGAGAGAAAGCGAAGAGGATTCCCGCTTAAGGGGCTCTT
GGGAGAGAAGGGAGGATCGTGGATCACGCACCAGCGACGAGGAGTCCAGTTCTTACAGCAGTGG
TCCATGCGTGGGAGCAAGTGAAGACCAGCTCAGCAGCAGGGACTTGGGCTCCACTCCTCCCCAG
AGTCCAAGTCCAAGGATGAAGGACCACACTACGCCTGGTGTGTCTAATCCAGGTCCCTCCAAGT
CCTGTAGGGAGACTGCAGACTCAATAGGTTCCAGGAACAAGGTGCCCTTTGGTAGCATACATGA
CGCAGTACGGGCTGGCGACGTCAAGCAGCTTTCAGACATCGTGGAACGTGGAGCCAACGTTAAT
GAAGTGGATGCGCTCCATCAGTTTACTCCTTTACATTGGGCTGCACATTCTGGAAGTTTAGAGT
GCCTTCACTGGCTACTCTGGAATGGTGCGGATGCCACACAGACAACTACAAGGGGATGGACAGC
AGCTCACGTAGCTGCCATCCGGGGTCAGGATGCCTGCTTGCAGGCTCTTATAATCAATGGAGCC
AACCTAGCAACTCAAGATGACCGTGGATGCACTCCAGTACACCTTGCTGCCACTCACGGACACT
CTTTTTCTTTACAAGTAATGCTGCGAAGTGGAGTGGATCCCAGCGTGACTGACAAGAGAGAATG
GAGACCTGTGCATTATGCAGCTTTTCATGGGCGGCTTGGCTGCTTGCAACTTCTTGTCAAATGG
GGATGTGGCATAGAAGACGTGGACTACAATGGAAACCTTCCCGTTCACTTAGCAGCCATGGAAG
GCCACCTCCATTGTTTTAAGTTCCTACTGAGTAGAGTGAACAGTGCAGTACAAGCCTTGAAAGC
CTTCAATGATAATGGAGAAAATGTACTGGACCTGGCACATCGGTTCTTAAAACAGAACATTGTA
CAGTTTATTCAGGGGGCTGAGTATGAAGGAAGCCATTTAGATGATCAGGATGATTTAGCCTTTC
CAGGCCATGTGGCTGCCTTTAAGGGTGATTTAGAAATGCTTAAGAAACTGATAGACGATGGGGT
AATTAATCTGAATGAACGTGATGAAAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGC
CACATCGATTGTTTGCAGTGGTTAGTTGAAATGGGAGCTGACAGCAATATTACCAACAAAGCAG
GAGAGAGACCCAGCGATGTGGCTAAGAGATTTGCCCATTTGGCAGCAGTGAAACTCTTAGAGGG
GCTACAGAAATATGAGATAGATGACATTGAAGGTGATAAAAATCATATAAGTTTTTTCATAAGG
CATGGTGTTGAAGGAAGCACCGATGCCAAGGATGACTTAAGTCTGAGTGAATCAGACAAAGCGA
ACGCCAGAATGAGAGCTCATAAGAAAATTGTAGAATTGAGACAACTTCTGGAAATCGCTGAGAG
CAACTTTAAACACTTGGGTGGGATAACAGAAGAGGATCTAAAGCAGAAGAAAGAACTACTGGAG
TCTAAGAAGACCATCACAGAGCTGCAGGAGCAGCTGGCCTATGAGCGACTCCGCAGGGAGAAGT
TAGAGTGTCAACTGGATGAGTACCGAGTGGAAGTGAATCAACTCAAGGAAGCGCTGGAGAAAAT
CCAGGTCCCCAGTGCTGAGGCTATGGAAGATGACTCCTGTGAATATAGCAAAGAGAAGAGGCGA
ATGAAAAAAAAAAACTCTCCTGGGGGCATGTTTGTGAGAAGGTTCTAATCAGTGCAGTAAGGTT
AAATAAAGCCTTGATTTTCCTTCACTTTAGAGGTATGTGAATAGATAGAAATCCTTCAGTTCTG
AAGGTGAAAATGTTATACATCAAACAGACTTAAAAATTCCATGGACTTAGGATATTTTTTATAT
GCATATATATGCAAGCCAACATCTATGAGAAATAATTTTGCAAGTATTCATATAAACTGTGAAC
TATGAGATGGTATAATCTAATAGTCAAAGGAAATCCAATTCTAGATAATAAAATTATTAAAATG
ATACTATGGCTTCACAATAAA

hide sequence

RefSeq Acc Id:

XM_017588946 ⟹ XP_017444435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI
mRatBN7.2	1	146,648,084 - 146,691,086 (-)	NCBI
Rnor_6.0	1	157,419,117 - 157,461,584 (-)	NCBI

Sequence:

show sequence

GCCACGCCCTCCAGCCTGCAGGAACTGAGACTCTGGAAAACAACTCTGAGCAGAGCGTTCCGGC
CGACGGCGGTTGCCGTCACAACCACCAGCGTGCCCCGGAGACCGGAGACTGCGGCCTCCGCGCC
AGCCGCCGTGCGTGTGCGGTCCGCGGTCCGCACGGCTACCTCGGCTCCGGGTCTAGGGAGAAGG
TCCTGGAAAAGCAGGGATTCTGTTGCCACAACCCCAGAGAAAGAAACCTAGAAGGAGGGAACCG
CCACACCAAGATCTCTTCAGTAAGAGTAAGTGAGGACGGCGGCGTTTCCCGAAGGGACTCGAGA
AGACCCAGTGAAGACCTAAGGCAGCACCGCTGCGTCTCTCAGGAGAGAATTAGGGAACAGGATG
GCTACCTGCAGAGCAGCCCATGGGTAGCTGTGAGGGGCGACAGTGGCCAACGCAGTGGCGACGC
GAGCCTAGGTGAAGTCGCTGGCTTGCATCCCTGCGACTTGAGGGCAACCGTCAACAAAGACGCC
TGGGTGGACGTCCCTGAAACTCGAGGGCTCCGAACCAGTGACTCCGGGATCCGAGACAGTGAGG
ACTGCAGCGGTTCTTGGGAAGGAGCAAGTGTCGATGCCAGCCACTGCCTCAGTTCTTGGGAAGG
AGTAAGTGATGAAAGGAGTTACGAGGCCAGAGACTCTTCTAGGGTGAACATCAGTGAAGACTCC
AGCCACCGGCTCCGTGGCTTATGGGAGAGAGAAAGCGAAGAGGATTCCCGCTTAAGGGGCTCTT
GGGAGAGAAGGGAGGATCGTGGATCACGCACCAGCGACGAGGAGTCCAGTTCTTACAGCAGTGG
TCCATGCGTGGGAGCAAGTGAAGACCAGCTCAGCAGCAGGGACTTGGGCTCCACTCCTCCCCAG
AGTCCAAGTCCAAGGATGAAGGACCACACTACGCCTGGTGTGTCTAATCCAGGTCCCTCCAAGT
CCTGTAGGGAGACTGCAGACTCAATAGGTTCCAGGAACAAGGTGCCCTTTGGTAGCATACATGA
CGCAGTACGGGCTGGCGACGTCAAGCAGCTTTCAGACATCGTGGAACGTGGAGCCAACGTTAAT
GAAGTGGATGCGCTCCATCAGTTTACTCCTTTACATTGGGCTGCACATTCTGGAAGTTTAGAGT
GCCTTCACTGGCTACTCTGGAATGGTGCGGATGCCACACAGACAACTACAAGGGGATGGACAGC
AGCTCACGTAGCTGCCATCCGGGGTCAGGATGCCTGCTTGCAGGCTCTTATAATCAATGGAGCC
AACCTAGCAACTCAAGATGACCGTGGATGCACTCCAGTACACCTTGCTGCCACTCACGGACACT
CTTTTTCTTTACAAGATCCCAGCGTGACTGACAAGAGAGAATGGAGACCTGTGCATTATGCAGC
TTTTCATGGGCGGCTTGGCTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATAGAAGACGTG
GACTACAATGGAAACCTTCCCGTTCACTTAGCAGCCATGGAAGGCCACCTCCATTGTTTTAAGT
TCCTACTGAGTAGAGTGAACAGTGCAGTACAAGCCTTGAAAGCCTTCAATGATAATGGAGAAAA
TGTACTGGACCTGGCACATCGGTTCTTAAAACAGAACATTGTACAGTTTATTCAGGGGGCTGAG
TATGAAGGAAGCCATTTAGATGATCAGGATGATTTAGCCTTTCCAGGCCATGTGGCTGCCTTTA
AGGGTGATTTAGAAATGCTTAAGAAACTGATAGACGATGGGGTAATTAATCTGAATGAACGTGA
TGAAAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGCCACATCGATTGTTTGCAGTGG
TTAGTTGAAATGGGAGCTGACAGCAATATTACCAACAAAGCAGGAGAGAGACCCAGCGATGTGG
CTAAGAGATTTGCCCATTTGGCAGCAGTGAAACTCTTAGAGGGGCTACAGAAATATGAGATAGA
TGACATTGAAGGTGATAAAAATCATATAAGTTTTTTCATAAGGCATGGTGTTGAAGGAAGCACC
GATGCCAAGGATGACTTAAGTCTGAGTGAATCAGACAAAGCGAACGCCAGAATGAGAGCTCATA
AGAAAATTGTAGAATTGAGACAACTTCTGGAAATCGCTGAGAGCAACTTTAAACACTTGGGTGG
GATAACAGAAGAGGATCTAAAGCAGAAGAAAGAACTACTGGAGTCTAAGAAGACCATCACAGAG
CTGCAGGAGCAGCTGGCCTATGAGCGACTCCGCAGGGAGAAGTTAGAGTGTCAACTGGATGAGT
ACCGAGTGGAAGTGAATCAACTCAAGGAAGCGCTGGAGAAAATCCAGGTCCCCAGTGCTGAGGC
TATGGAAGATGACTCCTGTGAATATAGCAAAGAGAAGAGGCGAATGAAAAAAAAAAACTCTCCT
GGGGGCATGTTTGTGAGAAGGTTCTAATCAGTGCAGTAAGGTTAAATAAAGCCTTGATTTTCCT
TCACTTTAGAGGTATGTGAATAGATAGAAATCCTTCAGTTCTGAAGGTGAAAATGTTATACATC
AAACAGACTTAAAAATTCCATGGACTTAGGATATTTTTTATATGCATATATATGCAAGCCAACA
TCTATGAGAAATAATTTTGCAAGTATTCATATAAACTGTGAACTATGAGATGGTATAATCTAAT
AGTCAAAGGAAATCCAATTCTAGATAATAAAATTATTAAAATGATACTATGGCTTCACAATAAA

hide sequence

RefSeq Acc Id:

XM_017588947 ⟹ XP_017444436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,067,361 - 156,103,521 (-)	NCBI
mRatBN7.2	1	146,654,898 - 146,691,086 (-)	NCBI
Rnor_6.0	1	157,425,586 - 157,461,584 (-)	NCBI

Sequence:

show sequence

GCCACGCCCTCCAGCCTGCAGGAACTGAGACTCTGGAAAACAACTCTGAGCAGAGCGTTCCGGC
CGACGGCGGTTGCCGTCACAACCACCAGCGTGCCCCGGAGACCGGAGACTGCGGCCTCCGCGCC
AGCCGCCGTGCGTGTGCGGTCCGCGGTCCGCACGGCTACCTCGGCTCCGGGTCTAGGGAGAAGG
TCCTGGAAAAGCAGGGATTCTGTTGCCACAACCCCAGAGAAAGAAACCTAGAAGGAGGGAACCG
CCACACCAAGATCTCTTCAGTAAGAGTAAGTGAGGACGGCGGCGTTTCCCGAAGGGACTCGAGA
AGACCCAGTGAAGACCTAAGGCAGCACCGCTGCGTCTCTCAGGAGAGAATTAGGGAACAGGATG
GCTACCTGCAGAGCAGCCCATGGGTAGCTGTGAGGGGCGACAGTGGCCAACGCAGTGGCGACGC
GAGCCTAGGTGAAGTCGCTGGCTTGCATCCCTGCGACTTGAGGGCAACCGTCAACAAAGACGCC
TGGGTGGACGTCCCTGAAACTCGAGGGCTCCGAACCAGTGACTCCGGGATCCGAGACAGTGAGG
ACTGCAGCGGTTCTTGGGAAGGAGCAAGTGTCGATGCCAGCCACTGCCTCAGTTCTTGGGAAGG
AGTAAGTGATGAAAGGAGTTACGAGGCCAGAGACTCTTCTAGGGTGAACATCAGTGAAGACTCC
AGCCACCGGCTCCGTGGCTTATGGGAGAGAGAAAGCGAAGAGGATTCCCGCTTAAGGGGCTCTT
GGGAGAGAAGGGAGGATCGTGGATCACGCACCAGCGACGAGGAGTCCAGTTCTTACAGCAGTGG
TCCATGCGTGGGAGCAAGTGAAGACCAGCTCAGCAGCAGGGACTTGGGCTCCACTCCTCCCCAG
AGTCCAAGTCCAAGGATGAAGGACCACACTACGCCTGGTGTGTCTAATCCAGGTCCCTCCAAGT
CCTGTAGGGAGACTGCAGACTCAATAGGTTCCAGGAACAAGGTGCCCTTTGGTAGCATACATGA
CGCAGTACGGGCTGGCGACGTCAAGCAGCTTTCAGACATCGTGGAACGTGGAGCCAACGTTAAT
GAAGTGGATGCGCTCCATCAGTTTACTCCTTTACATTGGGCTGCACATTCTGGAAGTTTAGAGT
GCCTTCACTGGCTACTCTGGAATGGTGCGGATGCCACACAGACAACTACAAGGGGATGGACAGC
AGCTCACGTAGCTGCCATCCGGGGTCAGGATGCCTGCTTGCAGGCTCTTATAATCAATGGAGCC
AACCTAGCAACTCAAGATGACCGTGGATGCACTCCAGTACACCTTGCTGCCACTCACGGACACT
CTTTTTCTTTACAAGTAATGCTGCGAAGTGGAGTGGATCCCAGCGTGACTGACAAGAGAGAATG
GAGACCTGTGCATTATGCAGCTTTTCATGGGCGGCTTGGCTGCTTGCAACTTCTTGTCAAATGG
GGATGTGGCATAGAAGACGTGGACTACAATGGAAACCTTCCCGTTCACTTAGCAGCCATGGAAG
GCCACCTCCATTGTTTTAAGTTCCTACTGAGTAGAGTGAACAGTGCAGTACAAGCCTTGAAAGC
CTTCAATGATAATGGAGAAAATGTACTGGACCTGGCACATCGGTTCTTAAAACAGAACATTGTA
CAGTTTATTCAGGGGGCTGAGTATGAAGGAAGCCATTTAGATGATCAGGATGATTTAGCCTTTC
CAGGCCATGTGGCTGCCTTTAAGGGTGATTTAGAAATGCTTAAGAAACTGATAGACGATGGGGT
AATTAATCTGAATGAACGTGATGAAAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGC
CACATCGATTGTTTGCAGTGGTTAGTTGAAATGGGAGCTGACAGCAATATTACCAACAAAGCAG
GAGAGAGACCCAGCGATGTGGCTAAGAGATTTGCCCATTTGGCAGCAGTGAAACTCTTAGAGGG
GCTACAGAAATATGAGATAGATGACATTGAAGGTGATAAAAATCATATAAGTTTTTTCATAAGG
CATGGTGTTGAAGGAAGCACCGATGCCAAGGATGACTTAAGTCTGAGTGAATCAGACAAAGCGA
ACGCCAGAAATCAATTCCATCCATAAGCTGCAGACCACGGTTCTGTTAAAGAAGAAGGCAATGG
GGGTGGAGAGTGAGAGCTCATAAGAAAATTGTAGAATTGAGACAACTTCTGGAAATCGCTGAGA
GCAACTTTAAACACTTGGGTGGGATAACAGAAGAGGAT

hide sequence

RefSeq Acc Id:

XM_039105925 ⟹ XP_038961853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI
mRatBN7.2	1	146,648,084 - 146,691,086 (-)	NCBI

RefSeq Acc Id:

XM_039105929 ⟹ XP_038961857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,090,823 (-)	NCBI
mRatBN7.2	1	146,648,084 - 146,678,039 (-)	NCBI

RefSeq Acc Id:

XM_039105930 ⟹ XP_038961858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,086,728 (-)	NCBI
mRatBN7.2	1	146,648,084 - 146,674,296 (-)	NCBI

RefSeq Acc Id:

XM_063284974 ⟹ XP_063141044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,060,516 - 156,103,543 (-)	NCBI

RefSeq Acc Id:

XM_063284984 ⟹ XP_063141054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	156,063,703 - 156,103,521 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128485	(Get FASTA)	NCBI Sequence Viewer
	XP_017444434	(Get FASTA)	NCBI Sequence Viewer
	XP_017444435	(Get FASTA)	NCBI Sequence Viewer
	XP_017444436	(Get FASTA)	NCBI Sequence Viewer
	XP_038961853	(Get FASTA)	NCBI Sequence Viewer
	XP_038961857	(Get FASTA)	NCBI Sequence Viewer
	XP_038961858	(Get FASTA)	NCBI Sequence Viewer
	XP_063141044	(Get FASTA)	NCBI Sequence Viewer
	XP_063141054	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18520	(Get FASTA)	NCBI Sequence Viewer
	EDM18521	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062031
	ENSRNOP00000062031.3

RefSeq Acc Id:

NP_001128485 ⟸ NM_001135013

- UniProtKB:

A6I660 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKDHTTPGVSNPGPSKSCRETADSSSRNKVPFGSIHDAVRAGDVKQLSDIVERGANVNEVDALH
QFTPLHWAAHSGSLECLHWLLWNGADATQTTTRGWTAAHVAAIRGQDACLQALIINGANLATQD
DRGCTPVHLAATHGHSFSLQVMLRSGVDPSVTDKREWRPVHYAAFHGRLGCLQLLVKWGCGIED
VDYNGNLPVHLAAMEGHLHCFKFLLSRVNSAVQALKAFNDNGENVLDLAHRFLKQNIVQFIQGA
EYEGSHLDDQDDLAFPGHVAAFKGDLEMLKKLIDDGVINLNERDENGSTPMHKAAGQGHIDCLQ
WLVEMGADSNITNKAGERPSDVAKRFAHLAAVKLLEGLQKYEIDDIEGDKNHISFFIRHGVEGS
TDAKDDLSLSESDKANARMRAHKKIVELRQLLEIAESNFKHLGGITEEDLKQKKELLESKKTIT
ELQEQLAYERLRREKLECQLDEYRVEVNQLKEALEKIQVPSAEAMEDDSCEYSKEKRRMKKKNS
PGGMFVRRF

hide sequence

RefSeq Acc Id:

XP_017444435 ⟸ XM_017588946

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKDHTTPGVSNPGPSKSCRETADSIGSRNKVPFGSIHDAVRAGDVKQLSDIVERGANVNEVDAL
HQFTPLHWAAHSGSLECLHWLLWNGADATQTTTRGWTAAHVAAIRGQDACLQALIINGANLATQ
DDRGCTPVHLAATHGHSFSLQDPSVTDKREWRPVHYAAFHGRLGCLQLLVKWGCGIEDVDYNGN
LPVHLAAMEGHLHCFKFLLSRVNSAVQALKAFNDNGENVLDLAHRFLKQNIVQFIQGAEYEGSH
LDDQDDLAFPGHVAAFKGDLEMLKKLIDDGVINLNERDENGSTPMHKAAGQGHIDCLQWLVEMG
ADSNITNKAGERPSDVAKRFAHLAAVKLLEGLQKYEIDDIEGDKNHISFFIRHGVEGSTDAKDD
LSLSESDKANARMRAHKKIVELRQLLEIAESNFKHLGGITEEDLKQKKELLESKKTITELQEQL
AYERLRREKLECQLDEYRVEVNQLKEALEKIQVPSAEAMEDDSCEYSKEKRRMKKKNSPGGMFV
RRF

hide sequence

RefSeq Acc Id:	XP_017444434 ⟸ XM_017588945
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKDHTTPGVSNPGPSKSCRETADSIGSRNKVPFGSIHDAVRAGDVKQLSDIVERGANVNEVDAL HQFTPLHWAAHSGSLECLHWLLWNGADATQTTTRGWTAAHVAAIRGQDACLQALIINGANLATQ DDRGCTPVHLAATHGHSFSLQVMLRSGVDPSVTDKREWRPVHYAAFHGRLGCLQLLVKWGCGIE DVDYNGNLPVHLAAMEGHLHCFKFLLSRVNSAVQALKAFNDNGENVLDLAHRFLKQNIVQFIQG AEYEGSHLDDQDDLAFPGHVAAFKGDLEMLKKLIDDGVINLNERDENGSTPMHKAAGQGHIDCL QWLVEMGADSNITNKAGERPSDVAKRFAHLAAVKLLEGLQKYEIDDIEGDKNHISFFIRHGVEG STDAKDDLSLSESDKANARMRAHKKIVELRQLLEIAESNFKHLGGITEEDLKQKKELLESKKTI TELQEQLAYERLRREKLECQLDEYRVEVNQLKEALEKIQVPSAEAMEDDSCEYSKEKRRMKKKN SPGGMFVRRF hide sequence

RefSeq Acc Id:

XP_017444436 ⟸ XM_017588947

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKDHTTPGVSNPGPSKSCRETADSIGSRNKVPFGSIHDAVRAGDVKQLSDIVERGANVNEVDAL
HQFTPLHWAAHSGSLECLHWLLWNGADATQTTTRGWTAAHVAAIRGQDACLQALIINGANLATQ
DDRGCTPVHLAATHGHSFSLQVMLRSGVDPSVTDKREWRPVHYAAFHGRLGCLQLLVKWGCGIE
DVDYNGNLPVHLAAMEGHLHCFKFLLSRVNSAVQALKAFNDNGENVLDLAHRFLKQNIVQFIQG
AEYEGSHLDDQDDLAFPGHVAAFKGDLEMLKKLIDDGVINLNERDENGSTPMHKAAGQGHIDCL
QWLVEMGADSNITNKAGERPSDVAKRFAHLAAVKLLEGLQKYEIDDIEGDKNHISFFIRHGVEG
STDAKDDLSLSESDKANARNQFHP

hide sequence

Ensembl Acc Id:

ENSRNOP00000062031 ⟸ ENSRNOT00000068402

RefSeq Acc Id:	XP_038961853 ⟸ XM_039105925
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038961857 ⟸ XM_039105929
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038961858 ⟸ XM_039105930
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063141044 ⟸ XM_063284974
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063141054 ⟸ XM_063284984
- Peptide Label:	isoform X7

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZA25-F1-model_v2	AlphaFold	D3ZA25	1-521	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690194

Promoter ID:

EPDNEW_R719

Type:

initiation region

Name:

Ankrd42_1

Description:

ankyrin repeat domain 42

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	157,461,611 - 157,461,671	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310789	AgrOrtholog
BioCyc Gene	G2FUF-58503	BioCyc
Ensembl Genes	ENSRNOG00000009664	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068402	ENTREZGENE
	ENSRNOT00000068402.4	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ank_Repeat/CDKN_Inhibitor	UniProtKB/TrEMBL
	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
KEGG Report	rno:293117	UniProtKB/TrEMBL
NCBI Gene	293117	ENTREZGENE
PANTHER	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	CYCLIN-DEPENDENT KINASE 4 INHIBITOR C-LIKE	UniProtKB/TrEMBL
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
	Ank_4	UniProtKB/TrEMBL
PhenoGen	Ankrd42	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009664	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	A6I660	ENTREZGENE, UniProtKB/TrEMBL
	D3ZA25	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ankrd42	ankyrin repeat domain 42	Ankrd42_predicted	ankyrin repeat domain 42 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ankrd42_predicted	ankyrin repeat domain 42 (predicted)	RGD1310789_predicted	similar to RIKEN cDNA 4933417L02 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1310789_predicted	similar to RIKEN cDNA 4933417L02 (predicted)	LOC293117_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC293117_predicted	similar to RIKEN cDNA 4933417L02 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message