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Gene: Tgfbrap1 (transforming growth factor, beta receptor associated protein 1) Rattus norvegicus

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Symbol:

Tgfbrap1

Name:

transforming growth factor, beta receptor associated protein 1

RGD ID:

1310772

Description:

Predicted to enable SMAD binding activity and transforming growth factor beta receptor binding activity. Predicted to be involved in several processes, including endosomal vesicle fusion; endosome to lysosome transport; and regulation of DNA-templated transcription. Predicted to be located in early endosome. Predicted to be part of CORVET complex. Predicted to be active in cytoplasm and membrane. Orthologous to human TGFBRAP1 (transforming growth factor beta receptor associated protein 1); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301373; transforming growth factor-beta receptor-associated protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	52,813,087 - 52,863,441 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	52,813,087 - 52,863,441 (-)	Ensembl				GRCr8
mRatBN7.2	9	45,320,975 - 45,371,329 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	45,320,930 - 45,371,311 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	53,815,752 - 53,865,936 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	58,938,553 - 58,988,735 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	57,218,826 - 57,269,178 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	49,852,560 - 49,902,943 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	49,852,560 - 49,902,943 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	42,251,501 - 42,301,886 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	43,038,902 - 43,089,223 (-)	NCBI		Celera
RGSC_v3.1	9	42,255,317 - 42,280,535 (-)	NCBI
Cytogenetic Map	9	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

epoxiconazole (ISO)

fenthion (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

panobinostat (ISO)

PCB138 (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endosomal vesicle fusion (IBA,IEA,ISO)

endosome to lysosome transport (IEA,ISO)

intracellular protein transport (IEA)

protein transport (IEA)

regulation of DNA-templated transcription (IEA,ISO)

signal transduction (IEA,ISO)

vesicle-mediated transport (IEA)

Cellular Component

CORVET complex (IBA,IEA,ISO)

cytoplasm (IBA,IEA)

early endosome (IEA,ISO)

endomembrane system (IEA)

membrane (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

SMAD binding (IEA,ISO)

transforming growth factor beta receptor binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

transforming growth factor-beta Smad dependent signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11278302	PMID:25266290

Genomics

Comparative Map Data

Tgfbrap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	52,813,087 - 52,863,441 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	52,813,087 - 52,863,441 (-)	Ensembl				GRCr8
mRatBN7.2	9	45,320,975 - 45,371,329 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	45,320,930 - 45,371,311 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	53,815,752 - 53,865,936 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	58,938,553 - 58,988,735 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	57,218,826 - 57,269,178 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	49,852,560 - 49,902,943 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	49,852,560 - 49,902,943 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	42,251,501 - 42,301,886 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	43,038,902 - 43,089,223 (-)	NCBI		Celera
RGSC_v3.1	9	42,255,317 - 42,280,535 (-)	NCBI
Cytogenetic Map	9	q22	NCBI

TGFBRAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	105,249,404 - 105,329,735 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	105,264,359 - 105,329,735 (-)	Ensembl			hg38	GRCh38
GRCh37	2	105,865,861 - 105,946,192 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	105,249,961 - 105,312,561 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	105,342,059 - 105,404,647	NCBI
Celera	2	100,084,016 - 100,146,596 (-)	NCBI		Celera
Cytogenetic Map	2	q12.1-q12.2	NCBI
HuRef	2	99,652,442 - 99,693,661 (-)	NCBI		HuRef
CHM1_1	2	105,887,841 - 105,929,095 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	105,710,521 - 105,790,921 (-)	NCBI		T2T-CHM13v2.0

Tgfbrap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	43,086,360 - 43,137,788 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	43,086,360 - 43,137,797 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	43,047,200 - 43,098,712 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	43,047,200 - 43,098,637 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	43,104,114 - 43,155,467 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	42,991,815 - 43,043,168 (-)	NCBI		MGSCv36	mm8
Celera	1	43,385,583 - 43,437,075 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	22.13	NCBI

Tgfbrap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	10,176,607 - 10,223,234 (-)	Ensembl
ChiLan1.0	NW_004955470	10,178,936 - 10,223,234 (-)	NCBI	ChiLan1.0	ChiLan1.0

TGFBRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	22,388,353 - 22,466,069 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	22,391,136 - 22,468,834 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	96,500,444 - 96,578,068 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	106,338,088 - 106,394,327 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	106,338,098 - 106,394,327 (-)	Ensembl			panPan2	panpan1.1

TGFBRAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	38,096,407 - 38,159,641 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	38,095,547 - 38,157,506 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	38,021,631 - 38,084,686 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	38,952,430 - 39,015,760 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	38,953,286 - 39,015,555 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	38,677,282 - 38,739,914 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	38,956,356 - 39,019,382 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	39,148,381 - 39,211,069 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tgfbrap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	87,252,589 - 87,324,664 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936764	701,116 - 747,621 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936764	675,615 - 747,613 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TGFBRAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	49,466,903 - 49,521,875 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	49,469,898 - 49,521,879 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	51,797,929 - 51,849,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TGFBRAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	8,900,342 - 8,963,107 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	8,898,587 - 8,942,148 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	176,618,479 - 176,684,106 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tgfbrap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	9,384,883 - 9,432,565 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	9,384,996 - 9,432,612 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tgfbrap1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	119,202,010 - 119,249,766 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tgfbrap1
299 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	511
Count of miRNA genes:	255
Interacting mature miRNAs:	337
Transcripts:	ENSRNOT00000037094
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

D9Rat104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	45,359,955 - 45,360,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	49,891,587 - 49,891,802	NCBI	Rnor6.0
Rnor_5.0	9	49,562,161 - 49,562,376	UniSTS	Rnor5.0
RGSC_v3.4	9	42,290,528 - 42,290,744	RGD	RGSC3.4
RGSC_v3.4	9	42,290,529 - 42,290,744	UniSTS	RGSC3.4
Celera	9	43,077,891 - 43,078,106	UniSTS
RGSC_v3.1	9	42,291,942 - 42,292,158	RGD
RH 2.0 Map	10	49.5	RGD
SHRSP x BN Map	9	38.8299	RGD
Cytogenetic Map	9	q22	UniSTS

RH143145

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	45,322,002 - 45,322,111 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	49,853,633 - 49,853,741	NCBI	Rnor6.0
Rnor_5.0	9	49,524,207 - 49,524,315	UniSTS	Rnor5.0
RGSC_v3.4	9	42,252,574 - 42,252,682	UniSTS	RGSC3.4
Celera	9	43,039,975 - 43,040,083	UniSTS
RH 3.4 Map	9	403.6	UniSTS
Cytogenetic Map	9	q22	UniSTS

RH130066

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	45,321,014 - 45,321,205 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	49,852,645 - 49,852,835	NCBI	Rnor6.0
Rnor_5.0	9	49,523,219 - 49,523,409	UniSTS	Rnor5.0
RGSC_v3.4	9	42,251,586 - 42,251,776	UniSTS	RGSC3.4
Celera	9	43,038,987 - 43,039,177	UniSTS
RH 3.4 Map	9	401.5	UniSTS
Cytogenetic Map	9	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037094 ⟹ ENSRNOP00000056202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	52,813,087 - 52,863,441 (-)	Ensembl
mRatBN7.2 Ensembl	9	45,320,930 - 45,371,311 (-)	Ensembl
Rnor_6.0 Ensembl	9	49,852,560 - 49,902,943 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079239 ⟹ ENSRNOP00000069317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	52,813,087 - 52,863,240 (-)	Ensembl
mRatBN7.2 Ensembl	9	45,320,930 - 45,361,625 (-)	Ensembl
Rnor_6.0 Ensembl	9	49,852,586 - 49,896,724 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100157 ⟹ ENSRNOP00000096555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	52,813,087 - 52,857,267 (-)	Ensembl
mRatBN7.2 Ensembl	9	45,320,930 - 45,365,256 (-)	Ensembl

RefSeq Acc Id:

NM_001106907 ⟹ NP_001100377

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,863,441 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,371,329 (-)	NCBI
Rnor_6.0	9	49,852,560 - 49,902,943 (-)	NCBI
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI
RGSC_v3.4	9	42,251,501 - 42,301,886 (-)	RGD
Celera	9	43,038,902 - 43,089,223 (-)	RGD

Sequence:

show sequence

GCTGTTGCACCTCGGCCAAGAGGAAAGACAGGGACGGAGAGCGGAGGGGAGTCCTGCCCCGGCC
GTGCCGGAAGCACGGGAGGCTAAGCAACGCGAGCTGGCCGCCATTGGTCCCGCCTCCTGTGACG
TCCCATGGCAGTGGCCTCAGGGATTCTCCCGACTGCTTGGAAAGACAGAATCGGCCAAGAGGGC
AGATAGCTGTGACCCCAATTGGCATGGTCATGTCTGAAGTCATCCTTCTTTTCGCTTTTTACAA
TGTCTCAATCGTTTATTGCCTAATCTCCCTTCTACATAAAGTAAGCCCAAATAACACTCCGTAA
TCCCCTCTCCTCCGACATATTGCTTCCACCTGGGCATGTGTAGCCTGTTGATTGACATCAAGGG
AGAGAAGTAGCAAGAAGCTGGTGTATGAAGAGGCAAGTTTAATGTCTGGAAATGTGGTCCCCAG
TCCCTGTTCTACTACTTGTCTCTGTGGATTTCTGGACCCACCATTCAAACTGAGACTTCAGACT
CTTCATCTGCAAAAAGTTGTGACAGATTACGCAGTAGACATGATGAACATCAAGGCCTTCACCT
TGGTCTCTGCAGTGGAACGGGAGCTGCTGATGGGTGACAGAGACCACATCAGCATTGAGTGTGT
GGAGTGCTGTGGCAGGAATCTCTATGTTGGCACCAACGACTGCTTCATTTACCACTTCCTGCTG
GAGGAGAAGGCCATGCCTACAGGGACAGCTACATTCATTGCCACCAAACAGCTACATAGACACC
TGGGCTTCAAGAAACCTGTGAACGAGCTGTGTGCAGCCTCAGCTCTTAATAGGCTGCTGGTGCT
CTGTGACAACTCTATAACCCTGGTTAACATGCTGAACCTGGAGCCAGTCCCCTCAGGAGCCCGC
ATCAAAGGGGCTACAACATTTGCAGTGAACGAGAACCCTGTGAATGGGGACCCTTTCTGTGTGG
AGGTGTGCATCATCTCTGTGAAGCGTAGGACCGTCCAAATGTTTCTGGTGTACGAGGACCGAGT
ACAGATTGTCAAGGAGGTGTCCACCACAGAGCAGCCTCTTGCTGTGGCTGTGGATGGCTACTTC
TTGTGCCTGGCCTTGACCACACAATACATCATCCTGAACTACAGCACAGGCTTTTCCCAGGACC
TGTTTCCCTACTGCAGTGAGGAGAAGCCACCCATCGTCAAGAGGATAGGCAGACAGGAGTTCTT
GCTGGCTGGCCCAGGAGGCTTGGGCATGTTTGCCACCGTGGCCGGGATCTCCCAGCGTGCCCCT
GTGCACTGGTCAGAAAATGTAATCGGGGCAGCTGTTTGCTTCCCCTATGTCATAGCGCTTGATG
ACGAATTCATCACAGTTCACAGCATGCTGGATCAGCAGCAGAAACAGACCCTGCCTTTTAAGGA
GGGTCACATCCTGCAGGACTTTGAAGGAAGAGTGATTGTTGCCACAAGTAAAGGAGTTTACATC
TTGGTTCCATTACCTCTGGAAAAACAAATACAGGATCTATTAGCAAACCGGAGAGTGGAAGAGG
CTTTAGTCTTGGCAAAAGGAGCCCGAAGGAACATTCCAAAAGAGAAGTTTCAGGTAATGTACAG
GAGGATTCTGCAGCAGGCAGGCTTTATACAGTTTGCGCAACTCCAGTTCCTGGAAGCAAAAGAG
CTCTTCAGAAGCAGCCAGCTGGATGTTCGGGAGCTGATCTCTCTCTACCCCTTCCTGTTGCCCA
CCTCCTCCTCCTTCACCCGGTCTCACCCTCCTCTTCATGAGTACGCAGACCTGAACCAACTGAC
CCAAGGTGACCAGGAGAAGATGGCCAAGTGCAAGCGCTTCCTCATGAGCTACCTAAATGAAATC
CGCAGCACAGAGGTAGCAAATGGCTACAAGGAAGACATCGACACGGCCTTGCTCAAGCTGTATG
CAGAGGCTGACCATGACAGCCTACTGGACCTCTTGGTCACTGAGAACTCCTGCTTGCTGACCGA
CAGTGCTGCCTGGCTGGAGAAGCACAAAAAGTGAGTACTTTGCACTGGGGCTGCTCTATCATTA
CAATAAACAAGACGCCTCTGCAGTTCAGTTGTGGGTGAACATTGTGAATGGGGACATCCAGGAC
TCCACACGCTCAGACCTGTATGAATACATCGTTGATTTTCTTACCTACTGCCTAGACCAAGAGC
TGGTGTGGACCCATGCTGACTGGCTGTTGCAGAAAAGCCAGGAGGTTGGAGTTCAGGTTTTCAC
CAAGAGACCTTTGGACGAGCAGCAGCAAACTAGTTTTAATCCAGACGACATTATTAGTTGCCTT
AAGAAATACCCTAAAGCCCTGGTTAAGTATCTGGAACATCTCGTTATCGACAGGAGATTGCAGA
AAGAAGAGTACCACACCCACCTTGCCCTCCTCTACCTGGAGGAAGTGCTTCGGCAGAGGGCACC
CACTGGAGGCAAGGATGTAGAAGCCACCGAGACACAGGCCAAACTCCGCAGGCTGCTCCAGAAG
TCTGACTTGTACCGTGTCCACTTGTTGAAAGAGAAAATCCAGGGTGCTGGCCTGCCCATGGAAA
GCGCCATCCTCCACGGGAAGCTGGGTGAGCATGAGAAGGCCCTGCACATCCTGGTGCACGAGAT
GGGGGACTTCTCTGCAGCTGAGGACTACTGCCTATGGAGCTCCGAGGGTCAGGATGCAGCCTGC
CGTCAGCGCCTCTTCCACACGCTGCTTGCCATGTACCTCCGTGCAGGCCCCTCTGCTCATGACC
TGACCGTGGCTGCTGTGGACTTGCTGAACCATCATGCCAGGGAATTTGATGCCACCCAGGTTCT
ACAGCTGCTGCCTGACACCTGGTCGGTGCAGCTTCTCTGCCCCTTCCTCACAGGGGCTATGAGG
GACAGCATCCACGCCAGGAGGACCACACAGGTGGCTCTTGGCCTGGCCAAATCAGAAAACCTGA
TTTACATGTATGATAAGATGAAGCTGAAGGGAAGTGCCATCTGGCTCTCAGAAAAAAAGCTTTG
CCAGCTCTGCCAGAACCCTTTTGGTGAACCTGTGTTTGTCAGATACCCAAATGGAGGGCTTGTG
CACACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCGCCCAGCCCTGGCACTCGGACTT
GAAAAGCCTGGTTCCAGGCTGCAAAGGGATTCCAAGTTCCTTTCCAAACCTGTTCATTTGTGTG
AGCTGGAACAAAGGGAAGGTGTGGGCACCAGGGAGGTGCTGTCCCTGGGAAACAGGGCACTTCA
CTGCTCATTGTTCTTTGTGTGAATGTCAATGGAAGGGCCTGACCCCCTCCCCTCCCCCACCCCA
CCCCAGGACAGTGACAGTCCAGGTGGTTACAGTCATCCAAAGCACAAGCCAACTTTGAAAGGCA
GGCGGTGTAGCCTGGGTGATCCAGACATAGGCGGGGCCTGGAAACAGGGTCTGCCTGGCCCAGG
CAAGTGTCCAGGGTACAGAGGCCTGAGCTGGGCACCTTGCCTTTAAGGAGGTGTACTCTTCATA
TAGGCTCCACATCTGCCCTGAAGTGCACGTAGTTTCTGTTCTTCCCATCCATCTGTCACCCTCT
GAAACCCTCCGCCTCGGTTAGCTAAGCACTTACTTGGTGTGAAGTCCTATGCTTCTGGCTGCCT
AGCACACGGAAATCTATCTAGAAAGACATAAAGCTTGAAGCAGACGGGATGGTGAAATGATTCA
GGGAGCAACGGCACTTGCCACCAAGCCTGACAACCTGAAATCAATCCACAGAGCCTACATGAGG
AGGGAGAGAACACGCGCTCGAGTGCATGCACACGTGTGCGCGCGGGCACACACACACACACACA
CACACACACACACACACACACACACACACATATGGTGGGGAAAAGAGGAGAGGTCTAAGTGGAA
AGATCCTTTGCCCATCCTGAAGACTGCAACAGAAAGGAGACCCAGGTGTGTGAGGGCCCAAAGT
AGGTTCCTTCTCATCCACTTGCAACTGCAAACACCTCGATGGACATGCACAACTCACATGTCTA
TTTGAATTCATATCATCTTCATAGTTTCATTTGGAATTTCTCCAGCTGTATTCACTGCAGATAG
CTCTTTCCTCGTTAAAATGTACCTTCTACTGAACACTTGGGAAATTCAAAGGGAAATGTGACCA
GTAAGCCAGTGAGCCTTCCAGGAGAGGCTCAGGCTGGCCTCCTCCCTGGCGGGCAGCTGTCAGG
GCTGCTTTCCGATGCTGTGCCCACAGGCGTTTCTGCAGGATCCTAGGCTAGGCCACCTTATCTG
CCAGCACTTTCCATGCCTGTCTGGAGCTTTCCTGAACCCTCAAAGGAAAGGTCTCATCTGTGAC
CAATGGACTTGGTGTCTCTGTCACATCACAGACAAACTGCAGCTCTTGCCATTCCCCTGCTCTC
TGAAGTCATCCCTGGGATGGTGACTCTGAGAACCTCAGGGCAGATCGCGCATCTCTACCAGGAT
GCTTGGAAAAGAGCATCTCCTAGGCTGAGGGGATGGCCACAGGACACACCCCACCCCAGCTGTC
CATTCTTGACAAAATGATCTCTGCACTTAACAATAATCCATATATTTCTTTTCCCTTTGGGATT
CCAAGTAAGCCGGGAAGTAAAAGCACCCGTGAGTGACCAGGGGACTGGCACCCTTTTCCCTACG
TGAGTTGAATGTCTGAGAATAAATGATGACGTCTCCTTGCAGCTCCACCGCGTCAAGGATGACT
GAGAATGCTCTTCTCACTGTGTGTCATTACAACCTACGAACTGGTGGTTTAACCTGAGCACTGT
CAAACCTGCAAGCACCGTTTCCCACGAACAGCGTGGGTGCAGTCTCAGAAAGGGCTTGTGATTG
CTCACTGCTAACGTGAGGGACCCCTGTCTCTTCTCTGAGTATTGATCGATGAAGTCGAGCAGCC
CAGCCCCCGCCCCCACCAAATCCTTTAAAGCAGACAGTTCTACAAGGTGGAGAGCCACCTCACA
TGTTACAAACTCTTATTTCCTTACCTTCCTCAAACTCTCCCAGGGGCCATTTCACAAATCCCAT
TTTTAAAATGAACACAGCATAGTTTTGTCACAGCCCTGCTCTCTCGTGACTGTCCCTGGGTAGC
ACAACAGCTGGCGCTCAGCTCCTTCCTCGGGCTCTGTAGCCATGCTAGCTGGAACTGCACAGGC
TGAGCTCAGGTCACATTGGCATCTGGAGGGGAGCAGGAATGTTCAGTTTGACTGTTTATCTGCT
TCTGCCTACCAGGCCTGTCACCTACGCTGTGGGCACCAGGTCTGAGCACAGAGTTTAGAGAGGC
TCTGTGAGCCGTGGTCGACAGCCCTGGAGCACAGAGAAATGGGTCACACTGTCATGGGGCGCCT
GTTGCACAACTAGGGCAACCCTTGCTTCCTGCTTGCTCTCCCACAGGAATCTGTCATCATAGCT
TCCTTTGCCTCTTAATGGGTCCCAAACCCACAAGATGTACAAATGTAAACTTGATGATTTTATT
AAAATTCTTCTAATTCTTTGTTCTTTTCTTGGGTCATTTTTAAAAATAAAAGCCACCTTGATG

hide sequence

RefSeq Acc Id:

NM_001393981 ⟹ NP_001380910

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,857,241 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,365,129 (-)	NCBI

RefSeq Acc Id:

XM_006244789 ⟹ XP_006244851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,857,256 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,365,148 (-)	NCBI
Rnor_6.0	9	49,852,601 - 49,896,674 (-)	NCBI
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI

Sequence:

show sequence

GGGCGGCCTGCAGGAGCGGCGGGTGCGCGACCGGCTCTGACGGACGCCCGCGCAGGTGCAGCGG
GGCGGGAGCAGGCGAGTGCCTGCATGACTGGGCCAGATTACGCAGTAGACATGATGAACATCAA
GGCCTTCACCTTGGTCTCTGCAGTGGAACGGGAGCTGCTGATGGGTGACAGAGACCACATCAGC
ATTGAGTGTGTGGAGTGCTGTGGCAGGAATCTCTATGTTGGCACCAACGACTGCTTCATTTACC
ACTTCCTGCTGGAGGAGAAGGCCATGCCTACAGGGACAGCTACATTCATTGCCACCAAACAGCT
ACATAGACACCTGGGCTTCAAGAAACCTGTGAACGAGCTGTGTGCAGCCTCAGCTCTTAATAGG
CTGCTGGTGCTCTGTGACAACTCTATAACCCTGGTTAACATGCTGAACCTGGAGCCAGTCCCCT
CAGGAGCCCGCATCAAAGGGGCTACAACATTTGCAGTGAACGAGAACCCTGTGAATGGGGACCC
TTTCTGTGTGGAGGTGTGCATCATCTCTGTGAAGCGTAGGACCGTCCAAATGTTTCTGGTGTAC
GAGGACCGAGTACAGATTGTCAAGGAGGTGTCCACCACAGAGCAGCCTCTTGCTGTGGCTGTGG
ATGGCTACTTCTTGTGCCTGGCCTTGACCACACAATACATCATCCTGAACTACAGCACAGGCTT
TTCCCAGGACCTGTTTCCCTACTGCAGTGAGGAGAAGCCACCCATCGTCAAGAGGATAGGCAGA
CAGGAGTTCTTGCTGGCTGGCCCAGGAGGCTTGGGCATGTTTGCCACCGTGGCCGGGATCTCCC
AGCGTGCCCCTGTGCACTGGTCAGAAAATGTAATCGGGGCAGCTGTTTGCTTCCCCTATGTCAT
AGCGCTTGATGACGAATTCATCACAGTTCACAGCATGCTGGATCAGCAGCAGAAACAGACCCTG
CCTTTTAAGGAGGGTCACATCCTGCAGGACTTTGAAGGAAGAGTGATTGTTGCCACAAGTAAAG
GAGTTTACATCTTGGTTCCATTACCTCTGGAAAAACAAATACAGGATCTATTAGCAAACCGGAG
AGTGGAAGAGGCTTTAGTCTTGGCAAAAGGAGCCCGAAGGAACATTCCAAAAGAGAAGTTTCAG
GTAATGTACAGGAGGATTCTGCAGCAGGCAGGCTTTATACAGTTTGCGCAACTCCAGTTCCTGG
AAGCAAAAGAGCTCTTCAGAAGCAGCCAGCTGGATGTTCGGGAGCTGATCTCTCTCTACCCCTT
CCTGTTGCCCACCTCCTCCTCCTTCACCCGGTCTCACCCTCCTCTTCATGAGTACGCAGACCTG
AACCAACTGACCCAAGGTGACCAGGAGAAGATGGCCAAGTGCAAGCGCTTCCTCATGAGCTACC
TAAATGAAATCCGCAGCACAGAGGTAGCAAATGGCTACAAGGAAGACATCGACACGGCCTTGCT
CAAGCTGTATGCAGAGGCTGACCATGACAGCCTACTGGACCTCTTGGTCACTGAGAACTCCTGC
TTGCTGACCGACAGTGCTGCCTGGCTGGAGAAGCACAAAAAGTACTTTGCACTGGGGCTGCTCT
ATCATTACAATAAACAAGACGCCTCTGCAGTTCAGTTGTGGGTGAACATTGTGAATGGGGACAT
CCAGGACTCCACACGCTCAGACCTGTATGAATACATCGTTGATTTTCTTACCTACTGCCTAGAC
CAAGAGCTGGTGTGGACCCATGCTGACTGGCTGTTGCAGAAAAGCCAGGAGGTTGGAGTTCAGG
TTTTCACCAAGAGACCTTTGGACGAGCAGCAGCAAACTAGTTTTAATCCAGACGACATTATTAG
TTGCCTTAAGAAATACCCTAAAGCCCTGGTTAAGTATCTGGAACATCTCGTTATCGACAGGAGA
TTGCAGAAAGAAGAGTACCACACCCACCTTGCCCTCCTCTACCTGGAGGAAGTGCTTCGGCAGA
GGGCACCCACTGGAGGCAAGGATGTAGAAGCCACCGAGACACAGGCCAAACTCCGCAGGCTGCT
CCAGAAGTCTGACTTGTACCGTGTCCACTTGTTGAAAGAGAAAATCCAGGGTGCTGGCCTGCCC
ATGGAAAGCGCCATCCTCCACGGGAAGCTGGGTGAGCATGAGAAGGCCCTGCACATCCTGGTGC
ACGAGATGGGGGACTTCTCTGCAGCTGAGGACTACTGCCTATGGAGCTCCGAGGGTCAGGATGC
AGCCTGCCGTCAGCGCCTCTTCCACACGCTGCTTGCCATGTACCTCCGTGCAGGCCCCTCTGCT
CATGACCTGACCGTGGCTGCTGTGGACTTGCTGAACCATCATGCCAGGGAATTTGATGCCACCC
AGGTTCTACAGCTGCTGCCTGACACCTGGTCGGTGCAGCTTCTCTGCCCCTTCCTCACAGGGGC
TATGAGGGACAGCATCCACGCCAGGAGGACCACACAGGTGGCTCTTGGCCTGGCCAAATCAGAA
AACCTGATTTACATGTATGATAAGATGAAGCTGAAGGGAAGTGCCATCTGGCTCTCAGAAAAAA
AGCTTTGCCAGCTCTGCCAGAACCCTTTTGGTGAACCTGTGTTTGTCAGATACCCAAATGGAGG
GCTTGTGCACACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCGCCCAGCCCTGGCACT
CGGACTTGAAAAGCCTGGTTCCAGGCTGCAAAGGGATTCCAAGTTCCTTTCCAAACCTGTTCAT
TTGTGTGAGCTGGAACAAAGGGAAGGTGTGGGCACCAGGGAGGTGCTGTCCCTGGGAAACAGGG
CACTTCACTGCTCATTGTTCTTTGTGTGAATGTCAATGGAAGGGCCTGACCCCCTCCCCTCCCC
CACCCCACCCCAGGACAGTGACAGTCCAGGTGGTTACAGTCATCCAAAGCACAAGCCAACTTTG
AAAGGCAGGCGGTGTAGCCTGGGTGATCCAGACATAGGCGGGGCCTGGAAACAGGGTCTGCCTG
GCCCAGGCAAGTGTCCAGGGTACAGAGGCCTGAGCTGGGCACCTTGCCTTTAAGGAGGTGTACT
CTTCATATAGGCTCCACATCTGCCCTGAAGTGCACGTAGTTTCTGTTCTTCCCATCCATCTGTC
ACCCTCTGAAACCCTCCGCCTCGGTTAGCTAAGCACTTACTTGGTGTGAAGTCCTATGCTTCTG
GCTGCCTAGCACACGGAAATCTATCTAGAAAGACATAAAGCTTGAAGCAGACGGGATGGTGAAA
TGATTCAGGGAGCAACGGCACTTGCCACCAAGCCTGACAACCTGAAATCAATCCACAGAGCCTA
CATGAGGAGGGAGAGAACACGCGCTCGAGTGCATGCACACGTGTGCGCGCGGGCACACACACAC
ACACACACACACACACACACACACACACACACACACATATGGTGGGGAAAAGAGGAGAGGTCTA
AGTGGAAAGATCCTTTGCCCATCCTGAAGACTGCAACAGAAAGGAGACCCAGGTGTGTGAGGGC
CCAAAGTAGGTTCCTTCTCATCCACTTGCAACTGCAAACACCTCGATGGACATGCACAACTCAC
ATGTCTATTTGAATTCATATCATCTTCATAGTTTCATTTGGAATTTCTCCAGCTGTATTCACTG
CAGATAGCTCTTTCCTCGTTAAAATGTACCTTCTACTGAACACTTGGGAAATTCAAAGGGAAAT
GTGACCAGTAAGCCAGTGAGCCTTCCAGGAGAGGCTCAGGCTGGCCTCCTCCCTGGCGGGCAGC
TGTCAGGGCTGCTTTCCGATGCTGTGCCCACAGGCGTTTCTGCAGGATCCTAGGCTAGGCCACC
TTATCTGCCAGCACTTTCCATGCCTGTCTGGAGCTTTCCTGAACCCTCAAAGGAAAGGTCTCAT
CTGTGACCAATGGACTTGGTGTCTCTGTCACATCACAGACAAACTGCAGCTCTTGCCATTCCCC
TGCTCTCTGAAGTCATCCCTGGGATGGTGACTCTGAGAACCTCAGGGCAGATCGCGCATCTCTA
CCAGGATGCTTGGAAAAGAGCATCTCCTAGGCTGAGGGGATGGCCACAGGACACACCCCACCCC
AGCTGTCCATTCTTGACAAAATGATCTCTGCACTTAACAATAATCCATATATTTCTTTTCCCTT
TGGGATTCCAAGTAAGCCGGGAAGTAAAAGCACCCGTGAGTGACCAGGGGACTGGCACCCTTTT
CCCTACGTGAGTTGAATGTCTGAGAATAAATGATGACGTCTCCTTGCAGCTCCACCGCGTCAAG
GATGACTGAGAATGCTCTTCTCACTGTGTGTCATTACAACCTACGAACTGGTGGTTTAACCTGA
GCACTGTCAAACCTGCAAGCACCGTTTCCCACGAACAGCGTGGGTGCAGTCTCAGAAAGGGCTT
GTGATTGCTCACTGCTAACGTGAGGGACCCCTGTCTCTTCTCTGAGTATTGATCGATGAAGTCG
AGCAGCCCAGCCCCCGCCCCCACCAAATCCTTTAAAGCAGACAGTTCTACAAGGTGGAGAGCCA
CCTCACATGTTACAAACTCTTATTTCCTTACCTTCCTCAAACTCTCCCAGGGGCCATTTCACAA
ATCCCATTTTTAAAATGAACACAGCATAGTTTTGTCACAGCCCTGCTCTCTCGTGACTGTCCCT
GGGTAGCACAACAGCTGGCGCTCAGCTCCTTCCTCGGGCTCTGTAGCCATGCTAGCTGGAACTG
CACAGGCTGAGCTCAGGTCACATTGGCATCTGGAGGGGAGCAGGAATGTTCAGTTTGACTGTTT
ATCTGCTTCTGCCTACCAGGCCTGTCACCTACGCTGTGGGCACCAGGTCTGAGCACAGAGTTTA
GAGAGGCTCTGTGAGCCGTGGTCGACAGCCCTGGAGCACAGAGAAATGGGTCACACTGTCATGG
GGCGCCTGTTGCACAACTAGGGCAACCCTTGCTTCCTGCTTGCTCTCCCACAGGAATCTGTCAT
CATAGCTTCCTTTGCCTCTTAATGGGTCCCAAACCCACAAGATGTACAAATGTAAACTTGATGA
TTTTATTAAAATTCTTCTAATTCTTTGTT

hide sequence

RefSeq Acc Id:

XM_006244791 ⟹ XP_006244853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,857,256 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,365,148 (-)	NCBI
Rnor_6.0	9	49,852,601 - 49,885,156 (-)	NCBI
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI

Sequence:

show sequence

GTCTGGAGAGATGGCTCAGTGGTTAAGAGAACATAGTGTTCCTACAAAGGATCTGAGTCTGGTT
CCTATCACCTGTGTCTATAACTCCAGCTCCAGTGGATCCTGTGCACCCTGGTCTCTATTACGCA
GTAGACATGATGAACATCAAGGCCTTCACCTTGGTCTCTGCAGTGGAACGGGAGCTGCTGATGG
GTGACAGAGACCACATCAGCATTGAGTGTGTGGAGTGCTGTGGCAGGAATCTCTATGTTGGCAC
CAACGACTGCTTCATTTACCACTTCCTGCTGGAGGAGAAGGCCATGCCTACAGGGACAGCTACA
TTCATTGCCACCAAACAGCTACATAGACACCTGGGCTTCAAGAAACCTGTGAACGAGCTGTGTG
CAGCCTCAGCTCTTAATAGGCTGCTGGTGCTCTGTGACAACTCTATAACCCTGGTTAACATGCT
GAACCTGGAGCCAGTCCCCTCAGGAGCCCGCATCAAAGGGGCTACAACATTTGCAGTGAACGAG
AACCCTGTGAATGGGGACCCTTTCTGTGTGGAGGTGTGCATCATCTCTGTGAAGCGTAGGACCG
TCCAAATGTTTCTGGTGTACGAGGACCGAGTACAGATTGTCAAGGAGGTGTCCACCACAGAGCA
GCCTCTTGCTGTGGCTGTGGATGGCTACTTCTTGTGCCTGGCCTTGACCACACAATACATCATC
CTGAACTACAGCACAGGCTTTTCCCAGGACCTGTTTCCCTACTGCAGTGAGGAGAAGCCACCCA
TCGTCAAGAGGATAGGCAGACAGGAGTTCTTGCTGGCTGGCCCAGGAGGCTTGGGCATGTTTGC
CACCGTGGCCGGGATCTCCCAGCGTGCCCCTGTGCACTGGTCAGAAAATGTAATCGGGGCAGCT
GTTTGCTTCCCCTATGTCATAGCGCTTGATGACGAATTCATCACAGTTCACAGCATGCTGGATC
AGCAGCAGAAACAGACCCTGCCTTTTAAGGAGGGTCACATCCTGCAGGACTTTGAAGGAAGAGT
GATTGTTGCCACAAGTAAAGGAGTTTACATCTTGGTTCCATTACCTCTGGAAAAACAAATACAG
GATCTATTAGCAAACCGGAGAGTGGAAGAGGCTTTAGTCTTGGCAAAAGGAGCCCGAAGGAACA
TTCCAAAAGAGAAGTTTCAGGTAATGTACAGGAGGATTCTGCAGCAGGCAGGCTTTATACAGTT
TGCGCAACTCCAGTTCCTGGAAGCAAAAGAGCTCTTCAGAAGCAGCCAGCTGGATGTTCGGGAG
CTGATCTCTCTCTACCCCTTCCTGTTGCCCACCTCCTCCTCCTTCACCCGGTCTCACCCTCCTC
TTCATGAGTACGCAGACCTGAACCAACTGACCCAAGGTGACCAGGAGAAGATGGCCAAGTGCAA
GCGCTTCCTCATGAGCTACCTAAATGAAATCCGCAGCACAGAGGTAGCAAATGGCTACAAGGAA
GACATCGACACGGCCTTGCTCAAGCTGTATGCAGAGGCTGACCATGACAGCCTACTGGACCTCT
TGGTCACTGAGAACTCCTGCTTGCTGACCGACAGTGCTGCCTGGCTGGAGAAGCACAAAAAGTA
CTTTGCACTGGGGCTGCTCTATCATTACAATAAACAAGACGCCTCTGCAGTTCAGTTGTGGGTG
AACATTGTGAATGGGGACATCCAGGACTCCACACGCTCAGACCTGTATGAATACATCGTTGATT
TTCTTACCTACTGCCTAGACCAAGAGCTGGTGTGGACCCATGCTGACTGGCTGTTGCAGAAAAG
CCAGGAGGTTGGAGTTCAGGTTTTCACCAAGAGACCTTTGGACGAGCAGCAGCAAACTAGTTTT
AATCCAGACGACATTATTAGTTGCCTTAAGAAATACCCTAAAGCCCTGGTTAAGTATCTGGAAC
ATCTCGTTATCGACAGGAGATTGCAGAAAGAAGAGTACCACACCCACCTTGCCCTCCTCTACCT
GGAGGAAGTGCTTCGGCAGAGGGCACCCACTGGAGGCAAGGATGTAGAAGCCACCGAGACACAG
GCCAAACTCCGCAGGCTGCTCCAGAAGTCTGACTTGTACCGTGTCCACTTGTTGAAAGAGAAAA
TCCAGGGTGCTGGCCTGCCCATGGAAAGCGCCATCCTCCACGGGAAGCTGGGTGAGCATGAGAA
GGCCCTGCACATCCTGGTGCACGAGATGGGGGACTTCTCTGCAGCTGAGGACTACTGCCTATGG
AGCTCCGAGGGTCAGGATGCAGCCTGCCGTCAGCGCCTCTTCCACACGCTGCTTGCCATGTACC
TCCGTGCAGGCCCCTCTGCTCATGACCTGACCGTGGCTGCTGTGGACTTGCTGAACCATCATGC
CAGGGAATTTGATGCCACCCAGGTTCTACAGCTGCTGCCTGACACCTGGTCGGTGCAGCTTCTC
TGCCCCTTCCTCACAGGGGCTATGAGGGACAGCATCCACGCCAGGAGGACCACACAGGTGGCTC
TTGGCCTGGCCAAATCAGAAAACCTGATTTACATGTATGATAAGATGAAGCTGAAGGGAAGTGC
CATCTGGCTCTCAGAAAAAAAGCTTTGCCAGCTCTGCCAGAACCCTTTTGGTGAACCTGTGTTT
GTCAGATACCCAAATGGAGGGCTTGTGCACACCCACTGTGCCGCCAGCAGACACACAAACCCCA
GCTCGCCCAGCCCTGGCACTCGGACTTGAAAAGCCTGGTTCCAGGCTGCAAAGGGATTCCAAGT
TCCTTTCCAAACCTGTTCATTTGTGTGAGCTGGAACAAAGGGAAGGTGTGGGCACCAGGGAGGT
GCTGTCCCTGGGAAACAGGGCACTTCACTGCTCATTGTTCTTTGTGTGAATGTCAATGGAAGGG
CCTGACCCCCTCCCCTCCCCCACCCCACCCCAGGACAGTGACAGTCCAGGTGGTTACAGTCATC
CAAAGCACAAGCCAACTTTGAAAGGCAGGCGGTGTAGCCTGGGTGATCCAGACATAGGCGGGGC
CTGGAAACAGGGTCTGCCTGGCCCAGGCAAGTGTCCAGGGTACAGAGGCCTGAGCTGGGCACCT
TGCCTTTAAGGAGGTGTACTCTTCATATAGGCTCCACATCTGCCCTGAAGTGCACGTAGTTTCT
GTTCTTCCCATCCATCTGTCACCCTCTGAAACCCTCCGCCTCGGTTAGCTAAGCACTTACTTGG
TGTGAAGTCCTATGCTTCTGGCTGCCTAGCACACGGAAATCTATCTAGAAAGACATAAAGCTTG
AAGCAGACGGGATGGTGAAATGATTCAGGGAGCAACGGCACTTGCCACCAAGCCTGACAACCTG
AAATCAATCCACAGAGCCTACATGAGGAGGGAGAGAACACGCGCTCGAGTGCATGCACACGTGT
GCGCGCGGGCACACACACACACACACACACACACACACACACACACACACACACACATATGGTG
GGGAAAAGAGGAGAGGTCTAAGTGGAAAGATCCTTTGCCCATCCTGAAGACTGCAACAGAAAGG
AGACCCAGGTGTGTGAGGGCCCAAAGTAGGTTCCTTCTCATCCACTTGCAACTGCAAACACCTC
GATGGACATGCACAACTCACATGTCTATTTGAATTCATATCATCTTCATAGTTTCATTTGGAAT
TTCTCCAGCTGTATTCACTGCAGATAGCTCTTTCCTCGTTAAAATGTACCTTCTACTGAACACT
TGGGAAATTCAAAGGGAAATGTGACCAGTAAGCCAGTGAGCCTTCCAGGAGAGGCTCAGGCTGG
CCTCCTCCCTGGCGGGCAGCTGTCAGGGCTGCTTTCCGATGCTGTGCCCACAGGCGTTTCTGCA
GGATCCTAGGCTAGGCCACCTTATCTGCCAGCACTTTCCATGCCTGTCTGGAGCTTTCCTGAAC
CCTCAAAGGAAAGGTCTCATCTGTGACCAATGGACTTGGTGTCTCTGTCACATCACAGACAAAC
TGCAGCTCTTGCCATTCCCCTGCTCTCTGAAGTCATCCCTGGGATGGTGACTCTGAGAACCTCA
GGGCAGATCGCGCATCTCTACCAGGATGCTTGGAAAAGAGCATCTCCTAGGCTGAGGGGATGGC
CACAGGACACACCCCACCCCAGCTGTCCATTCTTGACAAAATGATCTCTGCACTTAACAATAAT
CCATATATTTCTTTTCCCTTTGGGATTCCAAGTAAGCCGGGAAGTAAAAGCACCCGTGAGTGAC
CAGGGGACTGGCACCCTTTTCCCTACGTGAGTTGAATGTCTGAGAATAAATGATGACGTCTCCT
TGCAGCTCCACCGCGTCAAGGATGACTGAGAATGCTCTTCTCACTGTGTGTCATTACAACCTAC
GAACTGGTGGTTTAACCTGAGCACTGTCAAACCTGCAAGCACCGTTTCCCACGAACAGCGTGGG
TGCAGTCTCAGAAAGGGCTTGTGATTGCTCACTGCTAACGTGAGGGACCCCTGTCTCTTCTCTG
AGTATTGATCGATGAAGTCGAGCAGCCCAGCCCCCGCCCCCACCAAATCCTTTAAAGCAGACAG
TTCTACAAGGTGGAGAGCCACCTCACATGTTACAAACTCTTATTTCCTTACCTTCCTCAAACTC
TCCCAGGGGCCATTTCACAAATCCCATTTTTAAAATGAACACAGCATAGTTTTGTCACAGCCCT
GCTCTCTCGTGACTGTCCCTGGGTAGCACAACAGCTGGCGCTCAGCTCCTTCCTCGGGCTCTGT
AGCCATGCTAGCTGGAACTGCACAGGCTGAGCTCAGGTCACATTGGCATCTGGAGGGGAGCAGG
AATGTTCAGTTTGACTGTTTATCTGCTTCTGCCTACCAGGCCTGTCACCTACGCTGTGGGCACC
AGGTCTGAGCACAGAGTTTAGAGAGGCTCTGTGAGCCGTGGTCGACAGCCCTGGAGCACAGAGA
AATGGGTCACACTGTCATGGGGCGCCTGTTGCACAACTAGGGCAACCCTTGCTTCCTGCTTGCT
CTCCCACAGGAATCTGTCATCATAGCTTCCTTTGCCTCTTAATGGGTCCCAAACCCACAAGATG
TACAAATGTAAACTTGATGATTTTATTAAAATTCTTCTAATTCTTTGTT

hide sequence

RefSeq Acc Id:

XM_006244792 ⟹ XP_006244854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,857,256 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,365,146 (-)	NCBI
Rnor_6.0	9	49,852,601 - 49,896,647 (-)	NCBI
Rnor_5.0	9	49,523,134 - 49,573,517 (-)	NCBI

Sequence:

show sequence

CGACCGGCTCTGACGGACGCCCGCGCAGATTACGCAGTAGACATGATGAACATCAAGGCCTTCA
CCTTGGTCTCTGCAGTGGAACGGGAGCTGCTGATGGGTGACAGAGACCACATCAGCATTGAGTG
TGTGGAGTGCTGTGGCAGGAATCTCTATGTTGGCACCAACGACTGCTTCATTTACCACTTCCTG
CTGGAGGAGAAGGCCATGCCTACAGGGACAGCTACATTCATTGCCACCAAACAGCTACATAGAC
ACCTGGGCTTCAAGAAACCTGTGAACGAGCTGTGTGCAGCCTCAGCTCTTAATAGGCTGCTGGT
GCTCTGTGACAACTCTATAACCCTGGTTAACATGCTGAACCTGGAGCCAGTCCCCTCAGGAGCC
CGCATCAAAGGGGCTACAACATTTGCAGTGAACGAGAACCCTGTGAATGGGGACCCTTTCTGTG
TGGAGGTGTGCATCATCTCTGTGAAGCGTAGGACCGTCCAAATGTTTCTGGTGTACGAGGACCG
AGTACAGATTGTCAAGGAGGTGTCCACCACAGAGCAGCCTCTTGCTGTGGCTGTGGATGGCTAC
TTCTTGTGCCTGGCCTTGACCACACAATACATCATCCTGAACTACAGCACAGGCTTTTCCCAGG
ACCTGTTTCCCTACTGCAGTGAGGAGAAGCCACCCATCGTCAAGAGGATAGGCAGACAGGAGTT
CTTGCTGGCTGGCCCAGGAGGCTTGGGCATGTTTGCCACCGTGGCCGGGATCTCCCAGCGTGCC
CCTGTGCACTGGTCAGAAAATGTAATCGGGGCAGCTGTTTGCTTCCCCTATGTCATAGCGCTTG
ATGACGAATTCATCACAGTTCACAGCATGCTGGATCAGCAGCAGAAACAGACCCTGCCTTTTAA
GGAGGGTCACATCCTGCAGGACTTTGAAGGAAGAGTGATTGTTGCCACAAGTAAAGGAGTTTAC
ATCTTGGTTCCATTACCTCTGGAAAAACAAATACAGGATCTATTAGCAAACCGGAGAGTGGAAG
AGGCTTTAGTCTTGGCAAAAGGAGCCCGAAGGAACATTCCAAAAGAGAAGTTTCAGGTAATGTA
CAGGAGGATTCTGCAGCAGGCAGGCTTTATACAGTTTGCGCAACTCCAGTTCCTGGAAGCAAAA
GAGCTCTTCAGAAGCAGCCAGCTGGATGTTCGGGAGCTGATCTCTCTCTACCCCTTCCTGTTGC
CCACCTCCTCCTCCTTCACCCGGTCTCACCCTCCTCTTCATGAGTACGCAGACCTGAACCAACT
GACCCAAGGTGACCAGGAGAAGATGGCCAAGTGCAAGCGCTTCCTCATGAGCTACCTAAATGAA
ATCCGCAGCACAGAGGTAGCAAATGGCTACAAGGAAGACATCGACACGGCCTTGCTCAAGCTGT
ATGCAGAGGCTGACCATGACAGCCTACTGGACCTCTTGGTCACTGAGAACTCCTGCTTGCTGAC
CGACAGTGCTGCCTGGCTGGAGAAGCACAAAAAGTACTTTGCACTGGGGCTGCTCTATCATTAC
AATAAACAAGACGCCTCTGCAGTTCAGTTGTGGGTGAACATTGTGAATGGGGACATCCAGGACT
CCACACGCTCAGACCTGTATGAATACATCGTTGATTTTCTTACCTACTGCCTAGACCAAGAGCT
GGTGTGGACCCATGCTGACTGGCTGTTGCAGAAAAGCCAGGAGGTTGGAGTTCAGGTTTTCACC
AAGAGACCTTTGGACGAGCAGCAGCAAACTAGTTTTAATCCAGACGACATTATTAGTTGCCTTA
AGAAATACCCTAAAGCCCTGGTTAAGTATCTGGAACATCTCGTTATCGACAGGAGATTGCAGAA
AGAAGAGTACCACACCCACCTTGCCCTCCTCTACCTGGAGGAAGTGCTTCGGCAGAGGGCACCC
ACTGGAGGCAAGGATGTAGAAGCCACCGAGACACAGGCCAAACTCCGCAGGCTGCTCCAGAAGT
CTGACTTGTACCGTGTCCACTTGTTGAAAGAGAAAATCCAGGGTGCTGGCCTGCCCATGGAAAG
CGCCATCCTCCACGGGAAGCTGGGTGAGCATGAGAAGGCCCTGCACATCCTGGTGCACGAGATG
GGGGACTTCTCTGCAGCTGAGGACTACTGCCTATGGAGCTCCGAGGGTCAGGATGCAGCCTGCC
GTCAGCGCCTCTTCCACACGCTGCTTGCCATGTACCTCCGTGCAGGCCCCTCTGCTCATGACCT
GACCGTGGCTGCTGTGGACTTGCTGAACCATCATGCCAGGGAATTTGATGCCACCCAGGTTCTA
CAGCTGCTGCCTGACACCTGGTCGGTGCAGCTTCTCTGCCCCTTCCTCACAGGGGCTATGAGGG
ACAGCATCCACGCCAGGAGGACCACACAGGTGGCTCTTGGCCTGGCCAAATCAGAAAACCTGAT
TTACATGTATGATAAGATGAAGCTGAAGGGAAGTGCCATCTGGCTCTCAGAAAAAAAGCTTTGC
CAGCTCTGCCAGAACCCTTTTGGTGAACCTGTGTTTGTCAGATACCCAAATGGAGGGCTTGTGC
ACACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCGCCCAGCCCTGGCACTCGGACTTG
AAAAGCCTGGTTCCAGGCTGCAAAGGGATTCCAAGTTCCTTTCCAAACCTGTTCATTTGTGTGA
GCTGGAACAAAGGGAAGGTGTGGGCACCAGGGAGGTGCTGTCCCTGGGAAACAGGGCACTTCAC
TGCTCATTGTTCTTTGTGTGAATGTCAATGGAAGGGCCTGACCCCCTCCCCTCCCCCACCCCAC
CCCAGGACAGTGACAGTCCAGGTGGTTACAGTCATCCAAAGCACAAGCCAACTTTGAAAGGCAG
GCGGTGTAGCCTGGGTGATCCAGACATAGGCGGGGCCTGGAAACAGGGTCTGCCTGGCCCAGGC
AAGTGTCCAGGGTACAGAGGCCTGAGCTGGGCACCTTGCCTTTAAGGAGGTGTACTCTTCATAT
AGGCTCCACATCTGCCCTGAAGTGCACGTAGTTTCTGTTCTTCCCATCCATCTGTCACCCTCTG
AAACCCTCCGCCTCGGTTAGCTAAGCACTTACTTGGTGTGAAGTCCTATGCTTCTGGCTGCCTA
GCACACGGAAATCTATCTAGAAAGACATAAAGCTTGAAGCAGACGGGATGGTGAAATGATTCAG
GGAGCAACGGCACTTGCCACCAAGCCTGACAACCTGAAATCAATCCACAGAGCCTACATGAGGA
GGGAGAGAACACGCGCTCGAGTGCATGCACACGTGTGCGCGCGGGCACACACACACACACACAC
ACACACACACACACACACACACACACACATATGGTGGGGAAAAGAGGAGAGGTCTAAGTGGAAA
GATCCTTTGCCCATCCTGAAGACTGCAACAGAAAGGAGACCCAGGTGTGTGAGGGCCCAAAGTA
GGTTCCTTCTCATCCACTTGCAACTGCAAACACCTCGATGGACATGCACAACTCACATGTCTAT
TTGAATTCATATCATCTTCATAGTTTCATTTGGAATTTCTCCAGCTGTATTCACTGCAGATAGC
TCTTTCCTCGTTAAAATGTACCTTCTACTGAACACTTGGGAAATTCAAAGGGAAATGTGACCAG
TAAGCCAGTGAGCCTTCCAGGAGAGGCTCAGGCTGGCCTCCTCCCTGGCGGGCAGCTGTCAGGG
CTGCTTTCCGATGCTGTGCCCACAGGCGTTTCTGCAGGATCCTAGGCTAGGCCACCTTATCTGC
CAGCACTTTCCATGCCTGTCTGGAGCTTTCCTGAACCCTCAAAGGAAAGGTCTCATCTGTGACC
AATGGACTTGGTGTCTCTGTCACATCACAGACAAACTGCAGCTCTTGCCATTCCCCTGCTCTCT
GAAGTCATCCCTGGGATGGTGACTCTGAGAACCTCAGGGCAGATCGCGCATCTCTACCAGGATG
CTTGGAAAAGAGCATCTCCTAGGCTGAGGGGATGGCCACAGGACACACCCCACCCCAGCTGTCC
ATTCTTGACAAAATGATCTCTGCACTTAACAATAATCCATATATTTCTTTTCCCTTTGGGATTC
CAAGTAAGCCGGGAAGTAAAAGCACCCGTGAGTGACCAGGGGACTGGCACCCTTTTCCCTACGT
GAGTTGAATGTCTGAGAATAAATGATGACGTCTCCTTGCAGCTCCACCGCGTCAAGGATGACTG
AGAATGCTCTTCTCACTGTGTGTCATTACAACCTACGAACTGGTGGTTTAACCTGAGCACTGTC
AAACCTGCAAGCACCGTTTCCCACGAACAGCGTGGGTGCAGTCTCAGAAAGGGCTTGTGATTGC
TCACTGCTAACGTGAGGGACCCCTGTCTCTTCTCTGAGTATTGATCGATGAAGTCGAGCAGCCC
AGCCCCCGCCCCCACCAAATCCTTTAAAGCAGACAGTTCTACAAGGTGGAGAGCCACCTCACAT
GTTACAAACTCTTATTTCCTTACCTTCCTCAAACTCTCCCAGGGGCCATTTCACAAATCCCATT
TTTAAAATGAACACAGCATAGTTTTGTCACAGCCCTGCTCTCTCGTGACTGTCCCTGGGTAGCA
CAACAGCTGGCGCTCAGCTCCTTCCTCGGGCTCTGTAGCCATGCTAGCTGGAACTGCACAGGCT
GAGCTCAGGTCACATTGGCATCTGGAGGGGAGCAGGAATGTTCAGTTTGACTGTTTATCTGCTT
CTGCCTACCAGGCCTGTCACCTACGCTGTGGGCACCAGGTCTGAGCACAGAGTTTAGAGAGGCT
CTGTGAGCCGTGGTCGACAGCCCTGGAGCACAGAGAAATGGGTCACACTGTCATGGGGCGCCTG
TTGCACAACTAGGGCAACCCTTGCTTCCTGCTTGCTCTCCCACAGGAATCTGTCATCATAGCTT
CCTTTGCCTCTTAATGGGTCCCAAACCCACAAGATGTACAAATGTAAACTTGATGATTTTATTA
AAATTCTTCTAATTCTTTGTT

hide sequence

RefSeq Acc Id:

XM_039083260 ⟹ XP_038939188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,863,262 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,371,329 (-)	NCBI

RefSeq Acc Id:

XM_039083262 ⟹ XP_038939190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,813,087 - 52,857,256 (-)	NCBI
mRatBN7.2	9	45,320,975 - 45,365,145 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100377	(Get FASTA)	NCBI Sequence Viewer
	NP_001380910	(Get FASTA)	NCBI Sequence Viewer
	XP_006244851	(Get FASTA)	NCBI Sequence Viewer
	XP_006244853	(Get FASTA)	NCBI Sequence Viewer
	XP_006244854	(Get FASTA)	NCBI Sequence Viewer
	XP_038939188	(Get FASTA)	NCBI Sequence Viewer
	XP_038939190	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99150	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056202
	ENSRNOP00000056202.4
	ENSRNOP00000069317.3
	ENSRNOP00000096555
	ENSRNOP00000096555.1

RefSeq Acc Id:	NP_001100377 ⟸ NM_001106907
- Peptide Label:	isoform 1
- UniProtKB:	D3ZXT8 (UniProtKB/TrEMBL), A0A0G2JV19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGNVVPSPCSTTCLCGFLDPPFKLRLQTLHLQKVVTDYAVDMMNIKAFTLVSAVERELLMGDR DHISIECVECCGRNLYVGTNDCFIYHFLLEEKAMPTGTATFIATKQLHRHLGFKKPVNELCAAS ALNRLLVLCDNSITLVNMLNLEPVPSGARIKGATTFAVNENPVNGDPFCVEVCIISVKRRTVQM FLVYEDRVQIVKEVSTTEQPLAVAVDGYFLCLALTTQYIILNYSTGFSQDLFPYCSEEKPPIVK RIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVCFPYVIALDDEFITVHSMLDQQQ KQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPK EKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSSQLDVRELISLYPFLLPTSSSFTRSHPPLHE YADLNQLTQGDQEKMAKCKRFLMSYLNEIRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVT ENSCLLTDSAAWLEKHKK hide sequence

RefSeq Acc Id:	XP_006244854 ⟸ XM_006244792
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JV19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMNIKAFTLVSAVERELLMGDRDHISIECVECCGRNLYVGTNDCFIYHFLLEEKAMPTGTATFI ATKQLHRHLGFKKPVNELCAASALNRLLVLCDNSITLVNMLNLEPVPSGARIKGATTFAVNENP VNGDPFCVEVCIISVKRRTVQMFLVYEDRVQIVKEVSTTEQPLAVAVDGYFLCLALTTQYIILN YSTGFSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVC FPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDL LANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSSQLDVRELI SLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEIRSTEVANGYKEDI DTALLKLYAEADHDSLLDLLVTENSCLLTDSAAWLEKHKKYFALGLLYHYNKQDASAVQLWVNI VNGDIQDSTRSDLYEYIVDFLTYCLDQELVWTHADWLLQKSQEVGVQVFTKRPLDEQQQTSFNP DDIISCLKKYPKALVKYLEHLVIDRRLQKEEYHTHLALLYLEEVLRQRAPTGGKDVEATETQAK LRRLLQKSDLYRVHLLKEKIQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAEDYCLWSS EGQDAACRQRLFHTLLAMYLRAGPSAHDLTVAAVDLLNHHAREFDATQVLQLLPDTWSVQLLCP FLTGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGSAIWLSEKKLCQLCQNPFGEPVFVR YPNGGLVHTHCAASRHTNPSSPSPGTRT hide sequence

RefSeq Acc Id:	XP_006244851 ⟸ XM_006244789
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6APH2 (UniProtKB/TrEMBL), A0A0G2JV19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGPDYAVDMMNIKAFTLVSAVERELLMGDRDHISIECVECCGRNLYVGTNDCFIYHFLLEEKA MPTGTATFIATKQLHRHLGFKKPVNELCAASALNRLLVLCDNSITLVNMLNLEPVPSGARIKGA TTFAVNENPVNGDPFCVEVCIISVKRRTVQMFLVYEDRVQIVKEVSTTEQPLAVAVDGYFLCLA LTTQYIILNYSTGFSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWS ENVIGAAVCFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPL PLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRS SQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEIRSTE VANGYKEDIDTALLKLYAEADHDSLLDLLVTENSCLLTDSAAWLEKHKKYFALGLLYHYNKQDA SAVQLWVNIVNGDIQDSTRSDLYEYIVDFLTYCLDQELVWTHADWLLQKSQEVGVQVFTKRPLD EQQQTSFNPDDIISCLKKYPKALVKYLEHLVIDRRLQKEEYHTHLALLYLEEVLRQRAPTGGKD VEATETQAKLRRLLQKSDLYRVHLLKEKIQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSA AEDYCLWSSEGQDAACRQRLFHTLLAMYLRAGPSAHDLTVAAVDLLNHHAREFDATQVLQLLPD TWSVQLLCPFLTGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGSAIWLSEKKLCQLCQN PFGEPVFVRYPNGGLVHTHCAASRHTNPSSPSPGTRT hide sequence

RefSeq Acc Id:	XP_006244853 ⟸ XM_006244791
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JV19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMNIKAFTLVSAVERELLMGDRDHISIECVECCGRNLYVGTNDCFIYHFLLEEKAMPTGTATFI ATKQLHRHLGFKKPVNELCAASALNRLLVLCDNSITLVNMLNLEPVPSGARIKGATTFAVNENP VNGDPFCVEVCIISVKRRTVQMFLVYEDRVQIVKEVSTTEQPLAVAVDGYFLCLALTTQYIILN YSTGFSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVC FPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDL LANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSSQLDVRELI SLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEIRSTEVANGYKEDI DTALLKLYAEADHDSLLDLLVTENSCLLTDSAAWLEKHKKYFALGLLYHYNKQDASAVQLWVNI VNGDIQDSTRSDLYEYIVDFLTYCLDQELVWTHADWLLQKSQEVGVQVFTKRPLDEQQQTSFNP DDIISCLKKYPKALVKYLEHLVIDRRLQKEEYHTHLALLYLEEVLRQRAPTGGKDVEATETQAK LRRLLQKSDLYRVHLLKEKIQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAEDYCLWSS EGQDAACRQRLFHTLLAMYLRAGPSAHDLTVAAVDLLNHHAREFDATQVLQLLPDTWSVQLLCP FLTGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGSAIWLSEKKLCQLCQNPFGEPVFVR YPNGGLVHTHCAASRHTNPSSPSPGTRT hide sequence

Ensembl Acc Id:

ENSRNOP00000069317 ⟸ ENSRNOT00000079239

Ensembl Acc Id:

ENSRNOP00000056202 ⟸ ENSRNOT00000037094

RefSeq Acc Id:	XP_038939188 ⟸ XM_039083260
- Peptide Label:	isoform X1
- UniProtKB:	D3ZXT8 (UniProtKB/TrEMBL), A0A0G2JV19 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939190 ⟸ XM_039083262
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JV19 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096555 ⟸ ENSRNOT00000100157

RefSeq Acc Id:	NP_001380910 ⟸ NM_001393981
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2JV19 (UniProtKB/TrEMBL)

Protein Domains

CNH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JV19-F1-model_v2	AlphaFold	A0A0G2JV19	1-860	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696647

Promoter ID:

EPDNEW_R7163

Type:

initiation region

Name:

Tgfbrap1_1

Description:

transforming growth factor, beta receptor associated protein1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	49,896,760 - 49,896,820	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310772	AgrOrtholog
BioCyc Gene	G2FUF-27674	BioCyc
Ensembl Genes	ENSRNOG00000024562	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037094	ENTREZGENE
	ENSRNOT00000037094.8	UniProtKB/TrEMBL
	ENSRNOT00000079239.3	UniProtKB/TrEMBL
	ENSRNOT00000100157	ENTREZGENE
	ENSRNOT00000100157.2	UniProtKB/TrEMBL
InterPro	Citron	UniProtKB/TrEMBL
	Clathrin_H-chain/VPS_repeat	UniProtKB/TrEMBL
	Vam6/VPS39/TRAP1	UniProtKB/TrEMBL
	Vps39/TGF_beta_rcpt-assoc_1	UniProtKB/TrEMBL
	VPS39/TGF_beta_rcpt-assoc_2	UniProtKB/TrEMBL
KEGG Report	rno:301373	UniProtKB/TrEMBL
NCBI Gene	301373	ENTREZGENE
PANTHER	PTHR12894	UniProtKB/TrEMBL
	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR-ASSOCIATED PROTEIN 1	UniProtKB/TrEMBL
Pfam	CNH	UniProtKB/TrEMBL
	Vps39_1	UniProtKB/TrEMBL
	Vps39_2	UniProtKB/TrEMBL
PhenoGen	Tgfbrap1	PhenoGen
PROSITE	CHCR	UniProtKB/TrEMBL
	CNH	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024562	RatGTEx
UniProt	A0A0G2JV19	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APH2	ENTREZGENE, UniProtKB/TrEMBL
	A6INR0_RAT	UniProtKB/TrEMBL
	D3ZXT8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tgfbrap1	transforming growth factor, beta receptor associated protein 1	Tgfbrap1_predicted	transforming growth factor, beta receptor associated protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tgfbrap1_predicted	transforming growth factor, beta receptor associated protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)