Mlph (melanophilin) - Rat Genome Database

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Gene: Mlph (melanophilin) Rattus norvegicus
Analyze
Symbol: Mlph
Name: melanophilin
RGD ID: 1310733
Description: Predicted to enable cytoskeletal protein binding activity; protein-macromolecule adaptor activity; and small GTPase binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within melanocyte differentiation; melanosome localization; and protein targeting. Predicted to be located in several cellular components, including cytoskeleton; melanosome; and perinuclear region of cytoplasm. Predicted to be part of unconventional myosin complex. Predicted to be active in cortical actin cytoskeleton. Human ortholog(s) of this gene implicated in Griscelli syndrome type 3. Orthologous to human MLPH (melanophilin); INTERACTS WITH 17alpha-ethynylestradiol; 3-chloropropane-1,2-diol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC316620
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8998,955,036 - 98,990,566 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl998,955,141 - 98,990,556 (+)EnsemblGRCr8
mRatBN7.2991,507,410 - 91,542,984 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,507,591 - 91,542,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx999,934,391 - 99,969,784 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,070,151 - 105,105,542 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,435,463 - 103,470,850 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,072,965 - 98,108,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,073,038 - 98,108,433 (+)Ensemblrn6Rnor6.0
Rnor_5.0997,753,726 - 97,789,586 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4990,113,308 - 90,149,114 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera989,051,850 - 89,087,296 (+)NCBICelera
RGSC_v3.1990,318,076 - 90,353,882 (+)NCBI
Cytogenetic Map9q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
Mono-carboxy isooctyl phthalate  (ISO)
N-nitrosodiethylamine  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
O-methyleugenol  (ISO)
ozone  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2379821   PMID:11504925   PMID:11856727   PMID:11886590   PMID:11887186   PMID:11980908   PMID:12221080   PMID:12477932   PMID:14730011   PMID:15357836   PMID:16137617   PMID:16247022  
PMID:17247639   PMID:17513864   PMID:23533145  


Genomics

Comparative Map Data
Mlph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8998,955,036 - 98,990,566 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl998,955,141 - 98,990,556 (+)EnsemblGRCr8
mRatBN7.2991,507,410 - 91,542,984 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,507,591 - 91,542,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx999,934,391 - 99,969,784 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,070,151 - 105,105,542 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,435,463 - 103,470,850 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,072,965 - 98,108,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,073,038 - 98,108,433 (+)Ensemblrn6Rnor6.0
Rnor_5.0997,753,726 - 97,789,586 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4990,113,308 - 90,149,114 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera989,051,850 - 89,087,296 (+)NCBICelera
RGSC_v3.1990,318,076 - 90,353,882 (+)NCBI
Cytogenetic Map9q36NCBI
MLPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,486,410 - 237,555,322 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,485,428 - 237,555,322 (+)Ensemblhg38GRCh38
GRCh372238,395,053 - 238,463,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,060,617 - 238,128,700 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342238,177,929 - 238,244,636NCBI
Celera2232,109,603 - 232,177,895 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2230,187,114 - 230,254,469 (+)NCBIHuRef
CHM1_12238,401,175 - 238,469,090 (+)NCBICHM1_1
T2T-CHM13v2.02237,977,449 - 238,045,300 (+)NCBIT2T-CHM13v2.0
Mlph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39190,842,750 - 90,878,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl190,842,807 - 90,878,864 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38190,915,024 - 90,951,142 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl190,915,085 - 90,951,142 (+)Ensemblmm10GRCm38
MGSCv37192,811,677 - 92,847,719 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36192,745,513 - 92,780,165 (+)NCBIMGSCv36mm8
Celera193,860,662 - 93,896,365 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map145.73NCBI
Mlph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,769,649 - 2,802,672 (-)Ensembl
ChiLan1.0NW_0049555422,769,709 - 2,807,768 (-)NCBIChiLan1.0ChiLan1.0
MLPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,117,065 - 140,181,132 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,132,032 - 140,197,501 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B124,716,573 - 124,781,829 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B243,569,782 - 243,633,177 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B243,569,782 - 243,633,177 (+)EnsemblpanPan2panpan1.1
MLPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,121,499 - 48,167,535 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,121,499 - 48,170,710 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2548,618,694 - 48,664,323 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02548,506,862 - 48,555,710 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2548,506,902 - 48,555,712 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12548,382,738 - 48,428,452 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,171,393 - 48,216,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,403,018 - 48,448,746 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mlph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,104,181 - 190,163,640 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936525775,955 - 821,085 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936525776,102 - 821,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MLPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,174,009 - 137,219,713 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115137,173,962 - 137,219,724 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,646,254 - 151,651,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MLPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,489,777 - 123,562,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10123,491,702 - 123,562,906 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604075,840,473 - 75,907,900 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mlph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248472,919,404 - 2,958,554 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248472,919,391 - 2,958,459 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mlph
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14162,919,614 - 162,953,907 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mlph
284 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:89
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000026795
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 60 144 70 69 38 30 38 6 265 122 10 118 81 90 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026795   ⟹   ENSRNOP00000026795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl998,955,141 - 98,990,556 (+)Ensembl
mRatBN7.2 Ensembl991,507,591 - 91,542,983 (+)Ensembl
Rnor_6.0 Ensembl998,073,038 - 98,108,433 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl998,091,902 - 98,096,657 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096955   ⟹   ENSRNOP00000090744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl998,955,141 - 98,990,556 (+)Ensembl
mRatBN7.2 Ensembl991,507,591 - 91,542,983 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108373   ⟹   ENSRNOP00000081873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,507,591 - 91,538,847 (+)Ensembl
RefSeq Acc Id: NM_001012135   ⟹   NP_001012135
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,955,177 - 98,990,566 (+)NCBI
mRatBN7.2991,507,591 - 91,542,984 (+)NCBI
Rnor_6.0998,073,038 - 98,108,429 (+)NCBI
Rnor_5.0997,753,726 - 97,789,586 (+)NCBI
RGSC_v3.4990,113,308 - 90,149,114 (+)RGD
Celera989,051,850 - 89,087,296 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245404   ⟹   XP_006245466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,955,057 - 98,989,862 (+)NCBI
mRatBN7.2991,507,448 - 91,542,984 (+)NCBI
Rnor_6.0998,072,966 - 98,108,429 (+)NCBI
Rnor_5.0997,753,726 - 97,789,586 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063267315   ⟹   XP_063123385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,955,046 - 98,989,862 (+)NCBI
RefSeq Acc Id: XM_063267316   ⟹   XP_063123386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,955,036 - 98,989,862 (+)NCBI
RefSeq Acc Id: NP_001012135   ⟸   NM_001012135
- UniProtKB: A0A8J8XSU2 (UniProtKB/TrEMBL),   A6JQM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245466   ⟸   XM_006245404
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000026795   ⟸   ENSRNOT00000026795
Ensembl Acc Id: ENSRNOP00000081873   ⟸   ENSRNOT00000108373
Ensembl Acc Id: ENSRNOP00000090744   ⟸   ENSRNOT00000096955
RefSeq Acc Id: XP_063123386   ⟸   XM_063267316
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123385   ⟸   XM_063267315
- Peptide Label: isoform X2
Protein Domains
FYVE-type zinc finger   Rab effector MyRIP/Melanophilin   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V8M0-F1-model_v2 AlphaFold G3V8M0 1-588 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696851
Promoter ID:EPDNEW_R7375
Type:initiation region
Name:Mlph_1
Description:melanophilin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7376  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0998,073,041 - 98,073,101EPDNEW
RGD ID:13696858
Promoter ID:EPDNEW_R7376
Type:single initiation site
Name:Mlph_2
Description:melanophilin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7375  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0998,091,906 - 98,091,966EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310733 AgrOrtholog
BioCyc Gene G2FUF-26733 BioCyc
Ensembl Genes ENSRNOG00000019763 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026795 ENTREZGENE
  ENSRNOT00000026795.9 UniProtKB/TrEMBL
  ENSRNOT00000096955 ENTREZGENE
  ENSRNOT00000096955.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110013 IMAGE-MGC_LOAD
InterPro FYVE_2 UniProtKB/TrEMBL
  Intracell_Transport_Effector UniProtKB/TrEMBL
  Melanophilin_FYVE_rel_dom UniProtKB/TrEMBL
  Myelin-assoc_OBP UniProtKB/TrEMBL
  Rab-bd_domain UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:316620 UniProtKB/TrEMBL
MGC_CLONE MGC:93800 IMAGE-MGC_LOAD
NCBI Gene 316620 ENTREZGENE
PANTHER MELANOPHILIN UniProtKB/TrEMBL
  MYELIN-ASSOCIATED OLIGODENDROCYTIC BASIC PROTEIN MOBP -RELATED UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/TrEMBL
  MOBP_C-Myrip UniProtKB/TrEMBL
PhenoGen Mlph PhenoGen
PROSITE RABBD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019763 RatGTEx
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A8I6AP30 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XSU2 ENTREZGENE, UniProtKB/TrEMBL
  A6JQM8 ENTREZGENE, UniProtKB/TrEMBL
  A6JQM9 ENTREZGENE, UniProtKB/TrEMBL
  G3V8M0 ENTREZGENE, UniProtKB/TrEMBL
  Q66HE9 ENTREZGENE
UniProt Secondary Q66HE9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Mlph  melanophilin  Mlph_predicted  melanophilin (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mlph_predicted  melanophilin (predicted)      Symbol and Name status set to approved 70820 APPROVED