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Gene: Xkr6 (XK related 6) Rattus norvegicus

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Symbol:

Xkr6

Name:

XK related 6

RGD ID:

1310719

Description:

Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human XKR6 (XK related 6); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical LOC305960; LOC305960; RGD1310719; X Kell blood group precursor related family member 6 homolog; X-linked Kx blood group related 6; XK, Kell blood group complex subunit-related family, member 6; XK-related protein 6; XRG6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	XKR6 (XK related 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Xkr6 (X-linked Kx blood group related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC486082 (XK-related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	XKR6 (XK related 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	XKR6 (XK related 6)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Xkr6 (X-linked Kx blood group related 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Xkr6 (X-linked Kx blood group related 6)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	xkr6b (XK, Kell blood group complex subunit-related family, member 6b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	xkr6a (XK, Kell blood group complex subunit-related family, member 6a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	xkr6a (XK, Kell blood group complex subunit-related family, member 6a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG18635	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Caenorhabditis elegans (roundworm):	ced-8	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32579	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32579	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	xkr6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	xkr6	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	42,032,411 - 42,269,300 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	42,033,028 - 42,235,591 (+)	Ensembl				GRCr8
mRatBN7.2	15	37,857,096 - 38,059,699 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,857,096 - 38,059,682 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	39,714,684 - 39,917,161 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,865,345 - 41,067,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	39,317,699 - 39,520,289 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,784,963 - 47,173,352 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,784,963 - 47,173,335 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	50,706,269 - 50,932,577 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	42,876,143 - 43,086,249 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	37,718,631 - 37,741,631 (+)	NCBI		Celera
RGSC_v3.1	15	42,891,537 - 43,101,934 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glycidol (EXP)

leflunomide (ISO)

methimazole (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process involved in development (IBA)

engulfment of apoptotic cell (IBA)

phosphatidylserine exposure on apoptotic cell surface (IBA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Xkr6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	42,032,411 - 42,269,300 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	42,033,028 - 42,235,591 (+)	Ensembl				GRCr8
mRatBN7.2	15	37,857,096 - 38,059,699 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,857,096 - 38,059,682 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	39,714,684 - 39,917,161 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,865,345 - 41,067,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	39,317,699 - 39,520,289 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,784,963 - 47,173,352 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,784,963 - 47,173,335 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	50,706,269 - 50,932,577 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	42,876,143 - 43,086,249 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	37,718,631 - 37,741,631 (+)	NCBI		Celera
RGSC_v3.1	15	42,891,537 - 43,101,934 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

XKR6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	10,896,045 - 11,201,833 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	10,896,045 - 11,201,833 (-)	Ensembl			hg38	GRCh38
GRCh37	8	10,753,555 - 11,059,342 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	10,791,064 - 11,096,285 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	10,791,065 - 10,897,401	NCBI
Celera	8	9,881,570 - 10,186,826 (-)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	9,683,585 - 9,989,001 (-)	NCBI		HuRef
CHM1_1	8	10,818,743 - 11,124,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	8,537,206 - 8,882,964 (+)	NCBI		T2T-CHM13v2.0

Xkr6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,841,608 - 64,084,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,843,952 - 64,058,258 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	63,606,530 - 63,845,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	63,606,503 - 63,820,809 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	64,225,367 - 64,439,248 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	62,749,129 - 62,774,129 (+)	NCBI		MGSCv36	mm8
Celera	14	61,383,611 - 61,597,620 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.34	NCBI

Xkr6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	52,410,317 - 52,636,228 (-)	Ensembl
ChiLan1.0	NW_004955403	52,410,318 - 52,636,952 (-)	NCBI	ChiLan1.0	ChiLan1.0

XKR6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	27,313,666 - 27,673,253 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	3,345,922 - 3,699,595 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	8,000,361 - 8,310,459 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

LOC486082
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,984,638 - 27,022,933 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	27,647,344 - 27,680,612 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	27,145,367 - 27,178,638 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	25	27,099,804 - 27,133,067 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,993,854 - 27,027,675 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	27,147,903 - 27,181,181 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Xkr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	5,816,640 - 5,835,750 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936675	2,751,400 - 2,983,960 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936675	2,750,401 - 2,768,457 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XKR6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	14,086,418 - 14,381,402 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	14,087,419 - 14,381,402 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	15,526,785 - 15,555,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XKR6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	7,908,454 - 8,203,995 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666052	34,208,730 - 34,522,122 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xkr6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	24,714,482 - 24,931,452 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	24,713,288 - 24,931,452 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Xkr6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	60,582,294 - 60,785,575 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Xkr6
709 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	104
Count of miRNA genes:	71
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000015540
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Markers in Region

BF416622

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	15	47,150,450 - 47,150,616	NCBI	Rnor6.0
Celera	15	37,725,856 - 37,726,019	UniSTS
RH 3.4 Map	15	282.5	UniSTS
Cytogenetic Map	15	p12	UniSTS

AW493804

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	15	50,674,288 - 50,674,409	NCBI	Rnor5.0
Rnor_5.0	6	118,032,861 - 118,032,980	NCBI	Rnor5.0
Rnor_5.0	15	50,837,030 - 50,837,151	NCBI	Rnor5.0
RGSC_v3.4	15	43,009,198 - 43,009,318	UniSTS	RGSC3.4
RGSC_v3.4	6	108,069,064 - 108,069,182	UniSTS	RGSC3.4
Celera	15	37,665,718 - 37,665,838	UniSTS
Celera	6	101,492,263 - 101,492,381	UniSTS
Cytogenetic Map	15	p12	UniSTS

BE114422

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	37,880,336 - 37,880,492 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	46,968,822 - 46,968,977	NCBI	Rnor6.0
Rnor_6.0	15	46,808,229 - 46,808,384	NCBI	Rnor6.0
Rnor_5.0	15	50,729,200 - 50,729,355	UniSTS	Rnor5.0
Rnor_5.0	15	50,569,755 - 50,569,910	UniSTS	Rnor5.0
RGSC_v3.4	15	42,899,274 - 42,899,429	UniSTS	RGSC3.4
Celera	15	37,563,297 - 37,563,452	UniSTS
RH 3.4 Map	15	278.0	UniSTS
Cytogenetic Map	15	p12	UniSTS

RH137775

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	37,863,320 - 37,863,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	46,951,809 - 46,951,952	NCBI	Rnor6.0
Rnor_6.0	15	46,791,216 - 46,791,359	NCBI	Rnor6.0
Rnor_5.0	15	50,712,187 - 50,712,330	UniSTS	Rnor5.0
Rnor_5.0	15	50,552,742 - 50,552,885	UniSTS	Rnor5.0
RGSC_v3.4	15	42,882,061 - 42,882,204	UniSTS	RGSC3.4
Celera	15	37,546,200 - 37,546,343	UniSTS
RH 3.4 Map	15	282.3	UniSTS
Cytogenetic Map	15	p12	UniSTS

AA891921

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	37,901,646 - 37,901,760 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	46,989,324 - 46,989,437	NCBI	Rnor6.0
Rnor_6.0	15	46,830,595 - 46,830,708	NCBI	Rnor6.0
Rnor_5.0	15	50,749,702 - 50,749,815	UniSTS	Rnor5.0
Rnor_5.0	15	50,592,121 - 50,592,234	UniSTS	Rnor5.0
RGSC_v3.4	15	42,921,782 - 42,921,895	UniSTS	RGSC3.4
Celera	15	37,584,548 - 37,584,661	UniSTS
RH 3.4 Map	15	279.3	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

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alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	13	68	173	91	90	59	40	59	6	321	136	5	166	102	113	31	31	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY534260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015540 ⟹ ENSRNOP00000015540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	42,033,028 - 42,235,591 (+)	Ensembl
mRatBN7.2 Ensembl	15	37,857,096 - 38,059,682 (+)	Ensembl
Rnor_6.0 Ensembl	15	46,784,963 - 47,173,335 (+)	Ensembl

RefSeq Acc Id:

NM_001012042 ⟹ NP_001012042

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	42,033,028 - 42,235,608 (+)	NCBI
mRatBN7.2	15	37,857,096 - 38,059,699 (+)	NCBI
Rnor_6.0	15	46,784,963 - 47,173,352 (+)	NCBI
Rnor_5.0	15	50,706,269 - 50,932,577 (+)	NCBI
RGSC_v3.4	15	42,876,143 - 43,086,249 (+)	RGD
Celera	15	37,718,631 - 37,741,631 (+)	RGD

Sequence:

show sequence

ACCTCCAGAGCTGGGAAGAGAGTCAAGATGGCGGCGAAATCCGATGGCGGTGGCGTGGGGGTGG
GCTTCGCCCAGCTGCACAACCTGGACGAGGCGGTGGGCAGCGGCGAGGAGGACGGGGAGCCCGG
GGGAGGCGGCTGCGGCGGCGGCGACGGCAGCGAGCCCGGCGAGAGCAGCTCGCTGCACATCTGC
CACTGCTGCAACACCTCCTCGTGCTACTGGGGCTGCCGCTCCGCCTGCCTGCGCTCGCTGCTGG
GCAAGAAGCCGCGCCGCAGCGCCGCCGCCGCCGACGGGGGGGACCAGCCGCTGCAGCCGCCCGG
GGCAGCCGGCCGCCACCCCCCGACGCCCTCGGCCGGCCGACCGCAGCCCGCGTCGCCGCAGGTG
GAGCGGCCGTGGCTTGACTGCCTGTGGATCGTGCTAGCGCTGCTGGTGTTCTTCGGGGACGTGG
GTACCGACCTGTGGCTGGCCCTCGACTACTACCGCAAGGGGGACTACGGCTGCTTCGGGCTGAC
CCTGTTCTTCGTGCTGGTGCCGTCGCTGCTGGTGCAGAGCCTGAGCTTCCGCTGGTTCGTGCAG
GACTACACGGGCGGCGGGCTGGGCGCCGTGGAGGGGCTCAGCAGCCGGGGACCCCCAATGATGG
GGGCCGGCTATGGCCACGGCGCGGCTCGCGGCGGCCCGGGCGCGGGGGGCTCGGCCACCCCGGG
GGCGCAGCGTCTGTGCCGCCTCTCCGTGTGGATCTGGCAGTCGGTCATCCACCTGCTGCAGATG
GGGCAGGTGTGGAGGTATATCCGCACCATGTACCTGGGGATTCAGAGCCAGCGGCAGAAGGAAC
ACCAGCGGCGCTTCTACTGGGCTATGATGTACGAATATGCAGATGTCAACATGCTGCGCCTCCT
GGAGACCTTTCTGGAGAGCGCCCCCCAACTGGTGCTACAGCTCTGCATAATGATCCAGAAGAAC
AGTGCAGAGACGCTGCCCTGTGTCTCCTCTGTGACTTCCCTGATGTCCCTGGCTTGGGTGCTAG
CTTCCTATCACAAGCTGCTGCGGGACTCCAGGGACGACAAGAAGAGCATGAGTTACAGAGGGGC
CCTCATCCACCTCTTCTGGCGCCTCTTCACCATCTCATCCCGAGTTATCTCTTTCGCCCTCTTT
GCTTCCATCTTCCAGCTGTATTTCGGGATCTTCGTGGTGGTGCACTGGTGCGCCATGGCCTTCT
GGATCATCCATGGTGGGACAGACTTCTGCATGTCCAAGTGGGAGGAGATCCTCTTCAACATGGT
GGTAGGGATCGTGTACATTTTCTGCTGGTTTAACGTCAAGGAAGGGCGGACTCGATATCGAATG
TTCGCATACTATACGATAGTCTTGACCGAGAATGCTGCCTTGACGTTCCTTTGGTATTTTTACA
GAAATCCGGAGAGCACTGACTCCTATGCCGTGCCAGCACTGTGTTGTGTCTTCGTTAGCTTTGT
GGCTGGGATTACGCTCATGCTCTTATACTATGGCGTGTTGCATCCCATGGGGCCGCGGGCTAAG
GTCTTTGCCAGCTCCTGTTGTGCCGAGCTGCTCTGGGGCATCCCTTTGCCCCCTGATGTTGAGC
CTATGGCACCTCAGACCCCTGGGTACCGGGGGACCCAGGTCACGCCCACCAGAGCCGTGACGGA
ACAGCAGGAGGACCTCACGGCTGATACTTGCCTGCCCGTATTCCAAGTGAGACCCATGGGGCCC
TCTACCCCCTCAGGGCGTCCTTACCACCCAGAAGGGCCCCTGATTAAGATTGACATGCCAAGAA
AGCGGTACCCGGCCTGGGATGCGCACTTTGTAGACAGGAGGCTGCGGAGGACTATTAACATCCT
GCAGTACGTCACCCCCACCGCAGTGGGCATTCGCTACCGAGATGGGCCTCTGCTCTATGAGCTG
CTGCAGTATGAGTCTTCACTCTAGAACACCTTTATCCAGATTGAGAAGGGGACCTTAAGTTTGG
TTGCGGTCAACGCCGCCTGCAAGAAATATAACCCTCCCTTCCCCAATACACAGAACCACCACCA
CCACCGCCACACCAACAACACCAACACTACAAAAAGATCAATAAGTCACATCCCCTTCAGATAA
GCTTTCTTTCCAGTCACTATATGTATACAAAGATATTCTCTATGTTTTATAAGTAAAAACAAAA
AGAAAATCTTTCTTTTGTTTTTTACACATAAGAAACAGTATTGAAAAAAATTAAATAATCCCAC
ACTACAGTTCCTAGGATGGAGAAGGAAAGCTAATCTCCTCTCCAAAACAAACAAACAAACAAAC
AAACAAACAAACAAACAAAAGTTTTCTACTTTACACCAAGTGTAGATCATTTATGGGATTGGTG
CTGATTGAGAGAACAAAACAAAACAAAACAAAACAAACAAAACCTTCAACTGCCTTATGCCCTT
AGGTGCTGAGTTTCTTTAGGTACTGTCACGTTTCCTCACAGAAAACTCTCTGGTAACTTTTGTA
CTAGAGAGAAAAAAAATTAAATAATCAAATGAAACAAAAATCTACCAACAAAGCAAATAAACTA
AAACCAAAACAATCCTTCCTATCTGATGATTTGTATCGAAAACCAAGCAAACAAACAAATTGAC
CAAAAGCAAAGGCATAGAAGCCCCTCTCTCTGTTCAGTTTCTCCTGCCCCCTCCCCATTTTACA
AAGCCTTCTGGAAGCTAAAGGGCTACTTGGATCTCCACTGGCCAGAAAAGCTCCGTGAAGGCTG
GCTATGTGCCATTTTAACATTTGCCTAGCAACAACTGCATTGTTTTCCCGTGCAGAAAAATAAA
TAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_010057819

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	42,032,411 - 42,269,300 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012042	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT07109	(Get FASTA)	NCBI Sequence Viewer
	EDL85325	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015540
	ENSRNOP00000015540.7
GenBank Protein	Q5GH57	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012042 ⟸ NM_001012042

- UniProtKB:

Q5GH57 (UniProtKB/Swiss-Prot), F1LPR0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAKSDGGGVGVGFAQLHNLDEAVGSGEEDGEPGGGGCGGGDGSEPGESSSLHICHCCNTSSCY
WGCRSACLRSLLGKKPRRSAAAADGGDQPLQPPGAAGRHPPTPSAGRPQPASPQVERPWLDCLW
IVLALLVFFGDVGTDLWLALDYYRKGDYGCFGLTLFFVLVPSLLVQSLSFRWFVQDYTGGGLGA
VEGLSSRGPPMMGAGYGHGAARGGPGAGGSATPGAQRLCRLSVWIWQSVIHLLQMGQVWRYIRT
MYLGIQSQRQKEHQRRFYWAMMYEYADVNMLRLLETFLESAPQLVLQLCIMIQKNSAETLPCVS
SVTSLMSLAWVLASYHKLLRDSRDDKKSMSYRGALIHLFWRLFTISSRVISFALFASIFQLYFG
IFVVVHWCAMAFWIIHGGTDFCMSKWEEILFNMVVGIVYIFCWFNVKEGRTRYRMFAYYTIVLT
ENAALTFLWYFYRNPESTDSYAVPALCCVFVSFVAGITLMLLYYGVLHPMGPRAKVFASSCCAE
LLWGIPLPPDVEPMAPQTPGYRGTQVTPTRAVTEQQEDLTADTCLPVFQVRPMGPSTPSGRPYH
PEGPLIKIDMPRKRYPAWDAHFVDRRLRRTINILQYVTPTAVGIRYRDGPLLYELLQYESSL

hide sequence

Ensembl Acc Id:

ENSRNOP00000015540 ⟸ ENSRNOT00000015540

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5GH57-F1-model_v2	AlphaFold	Q5GH57	1-638	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310719	AgrOrtholog
BioCyc Gene	G2FUF-13418	BioCyc
Ensembl Genes	ENSRNOG00000011634	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000015540	ENTREZGENE
	ENSRNOT00000015540.8	UniProtKB/Swiss-Prot
InterPro	XK-rel	UniProtKB/Swiss-Prot
	XK-related_scramblase	UniProtKB/Swiss-Prot
KEGG Report	rno:305960	UniProtKB/Swiss-Prot
NCBI Gene	305960	ENTREZGENE
PANTHER	XK-RELATED PROTEIN	UniProtKB/Swiss-Prot
	XK-RELATED PROTEIN 6	UniProtKB/Swiss-Prot
Pfam	XK-related	UniProtKB/Swiss-Prot
PhenoGen	Xkr6	PhenoGen
RatGTEx	ENSRNOG00000011634	RatGTEx
UniProt	F1LPR0	ENTREZGENE, UniProtKB/TrEMBL
	Q5GH57	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Xkr6	XK related 6	Xkr6	X-linked Kx blood group related 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-09	Xkr6	X-linked Kx blood group related 6	Xkr6	XK, Kell blood group complex subunit-related family, member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-12-15	Xkr6	XK, Kell blood group complex subunit-related family, member 6	Xkr6	X Kell blood group precursor related family member 6 homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Xkr6	X Kell blood group precursor related family member 6 homolog	RGD1310719	hypothetical LOC305960	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1310719	hypothetical LOC305960	RGD1310719_predicted	hypothetical LOC305960 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310719_predicted	hypothetical LOC305960 (predicted)	LOC305960_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305960_predicted	hypothetical LOC305960 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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