Advanced Search (OLGA)

Gene: Cwc27 (CWC27 spliceosome associated cyclophilin) Rattus norvegicus

Analyze

Symbol:

Cwc27

Name:

CWC27 spliceosome associated cyclophilin

RGD ID:

1310697

Description:

Predicted to be involved in protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome and catalytic step 2 spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CWC27 spliceosome-associated protein homolog; CWC27 spliceosome-associated protein homolog (S. cerevisiae); LOC361887; peptidyl-prolyl cis-trans isomerase CWC27 homolog; peptidyl-prolyl cis-trans isomerase SDCCAG10; PPIase CWC27; PPIase SDCCAG10; probable inactive peptidyl-prolyl cis-trans isomerase CWC27 homolog; Sdccag10; serologically defined colon cancer antigen 10; spliceosome-associated protein CWC27 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CWC27 (CWC27 spliceosome associated cyclophilin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cwc27 (CWC27 spliceosome-associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cwc27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CWC27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CWC27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cwc27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CWC27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CWC27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cwc27 (CWC27 spliceosome associated cyclophilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CWC27 (CWC27 spliceosome associated cyclophilin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cwc27 (CWC27 spliceosome-associated protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cwc27 (CWC27 spliceosome-associated protein homolog (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10907	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CWC27	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CWC27	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	cyn-16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cwc27	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cwc27	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,498,462 - 37,709,691 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,498,468 - 37,709,355 (-)	Ensembl				GRCr8
mRatBN7.2	2	35,764,674 - 35,975,908 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,764,686 - 35,975,872 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,883,218 - 43,086,092 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,941,921 - 41,144,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,794,078 - 35,998,730 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,716,420 - 34,923,060 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,719,344 - 34,923,024 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,846,098 - 54,048,834 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,567,205 - 35,825,390 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,727,272 - 31,931,733 (-)	NCBI		Celera
RGSC_v3.1	2	35,487,577 - 35,745,759 (-)	NCBI
Cytogenetic Map	2	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fundus dystrophy (ISO)

genetic disease (ISO)

Metaphyseal Chondrodysplasia with Retinitis Pigmentosa (ISO)

optic atrophy (ISO)

Premature Aging (ISO)

retinitis pigmentosa (ISO,ISS)

retinitis pigmentosa 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

cisplatin (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

daunorubicin (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

mercury dichloride (EXP)

N-methyl-N-nitrosourea (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

sodium arsenite (ISO)

T-2 toxin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein folding (IEA)

Cellular Component

catalytic step 2 spliceosome (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

spliceosomal complex (IEA,ISO)

U12-type catalytic step 2 spliceosome (IEA,ISO)

U2-type precatalytic spliceosome (IEA,ISO,ISS)

Molecular Function

peptidyl-prolyl cis-trans isomerase activity (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Luo A, etal., Neuropsychopharmacology. 2020 Jan;45(2):327-336. doi: 10.1038/s41386-019-0500-y. Epub 2019 Aug 29.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11555636	PMID:11991638	PMID:20676357	PMID:29360106

Genomics

Comparative Map Data

Cwc27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,498,462 - 37,709,691 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,498,468 - 37,709,355 (-)	Ensembl				GRCr8
mRatBN7.2	2	35,764,674 - 35,975,908 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,764,686 - 35,975,872 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,883,218 - 43,086,092 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,941,921 - 41,144,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,794,078 - 35,998,730 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,716,420 - 34,923,060 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,719,344 - 34,923,024 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,846,098 - 54,048,834 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,567,205 - 35,825,390 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,727,272 - 31,931,733 (-)	NCBI		Celera
RGSC_v3.1	2	35,487,577 - 35,745,759 (-)	NCBI
Cytogenetic Map	2	q13	NCBI

CWC27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	64,768,918 - 65,018,763 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	64,766,368 - 65,102,412 (+)	Ensembl			hg38	GRCh38
GRCh37	5	64,064,745 - 64,314,590 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	64,100,511 - 64,350,346 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	64,100,549 - 64,350,159	NCBI
Celera	5	61,061,675 - 61,311,486 (+)	NCBI		Celera
Cytogenetic Map	5	q12.3	NCBI
HuRef	5	61,019,332 - 61,269,130 (+)	NCBI		HuRef
CHM1_1	5	64,064,647 - 64,314,462 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	65,589,037 - 65,838,886 (+)	NCBI		T2T-CHM13v2.0

Cwc27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	104,767,648 - 104,953,649 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	104,767,648 - 104,953,650 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	104,631,140 - 104,817,110 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	104,631,140 - 104,817,142 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	105,421,407 - 105,607,033 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	105,751,522 - 105,937,524 (-)	NCBI		MGSCv36	mm8
Celera	13	109,026,765 - 109,210,743 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	56.64	NCBI

Cwc27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	4,032,347 - 4,230,444 (-)	Ensembl
ChiLan1.0	NW_004955446	4,032,493 - 4,230,444 (-)	NCBI	ChiLan1.0	ChiLan1.0

CWC27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	48,899,860 - 49,150,723 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	47,053,491 - 47,304,305 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	48,984,546 - 49,235,398 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	50,634,936 - 50,885,617 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	50,635,204 - 50,879,742 (-)	Ensembl			panPan2	panpan1.1

CWC27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	50,654,977 - 50,847,055 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	50,655,037 - 50,846,604 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	47,611,670 - 47,803,392 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	51,139,348 - 51,338,035 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	51,138,432 - 51,340,825 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	48,199,895 - 48,392,787 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	48,995,827 - 49,187,890 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	49,883,229 - 50,075,682 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cwc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	195,152,522 - 195,369,240 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	4,090,005 - 4,305,632 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	4,090,005 - 4,305,770 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CWC27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	43,345,838 - 43,593,470 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	43,346,295 - 43,593,474 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	46,762,964 - 46,875,589 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	16	46,572,560 - 46,628,754 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CWC27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	60,953,549 - 61,206,967 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	60,953,397 - 61,207,635 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	9,588,004 - 9,845,171 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cwc27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	4,863,908 - 5,082,347 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624815	4,863,902 - 5,082,308 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Cwc27
1534 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	25
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000017832
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

D2Got374

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	37,633,433 - 37,633,568 (+)	Marker Load Pipeline
mRatBN7.2	2	35,899,676 - 35,899,811 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,849,804 - 34,849,938	NCBI	Rnor6.0
Rnor_5.0	2	53,973,324 - 53,973,458	UniSTS	Rnor5.0
RGSC_v3.4	2	35,748,417 - 35,748,551	UniSTS	RGSC3.4
Celera	2	31,856,232 - 31,856,366	UniSTS
Cytogenetic Map	2	q13	UniSTS

RH131935

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,764,768 - 35,764,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,719,417 - 34,719,627	NCBI	Rnor6.0
Rnor_5.0	2	53,846,175 - 53,846,385	UniSTS	Rnor5.0
RGSC_v3.4	2	35,567,282 - 35,567,492	UniSTS	RGSC3.4
Celera	2	31,727,349 - 31,727,559	UniSTS
RH 3.4 Map	2	148.7	UniSTS
Cytogenetic Map	2	q13	UniSTS

RH144426

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,796,904 - 35,797,019 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,750,567 - 34,750,681	NCBI	Rnor6.0
Rnor_5.0	2	53,877,325 - 53,877,439	UniSTS	Rnor5.0
RGSC_v3.4	2	35,601,419 - 35,601,533	UniSTS	RGSC3.4
Celera	2	31,758,959 - 31,759,073	UniSTS
RH 3.4 Map	2	151.6	UniSTS
Cytogenetic Map	2	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017832 ⟹ ENSRNOP00000017832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	37,498,468 - 37,709,338 (-)	Ensembl
mRatBN7.2 Ensembl	2	35,764,843 - 35,975,731 (-)	Ensembl
Rnor_6.0 Ensembl	2	34,719,344 - 34,922,721 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090060 ⟹ ENSRNOP00000070377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	37,498,468 - 37,709,338 (-)	Ensembl
mRatBN7.2 Ensembl	2	35,764,686 - 35,975,872 (-)	Ensembl
Rnor_6.0 Ensembl	2	34,722,690 - 34,923,024 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143757 ⟹ ENSRNOP00000109063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	37,498,468 - 37,709,355 (-)	Ensembl

RefSeq Acc Id:

NM_001013199 ⟹ NP_001013217

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,498,462 - 37,709,338 (-)	NCBI
mRatBN7.2	2	35,764,692 - 35,975,579 (-)	NCBI
Rnor_6.0	2	34,719,340 - 34,922,721 (-)	NCBI
Rnor_5.0	2	53,846,098 - 54,048,834 (-)	NCBI
RGSC_v3.4	2	35,567,205 - 35,825,390 (-)	RGD
Celera	2	31,727,272 - 31,931,733 (-)	RGD

Sequence:

show sequence

CAGAGACCCGCCATTCGCTCGCGGCCACACTAAGGAACGGAGTCTTGAGCAGTGAGCAAGATGA
GTAACATCTACATCCAGGAGCCGCCCACGAATGGGAAGGTTTTATTGAAAACTACGGCTGGAGA
TATTGACATAGAGCTGTGGTCAAAAGAGGCCCCTAAAGCATGCAGAAATTTCATTCAGCTTTGT
TTGGAGGCCTACTATGACAACACCATTTTTCATAGAGTCGTACCTGGCTTCATAGTCCAAGGTG
GAGATCCCACAGGCACCGGGACTGGTGGAGAATCTGTCTATGGAGCCCCATTCAAGGATGAGTT
TCACTCACGGTTGCGTTTTAATAGGAGAGGACTGGTTGCCATGGCAAATGCCGGTCCACATGAT
AATGGCAGCCAGTTTTTCTTTACCCTGGGTCGAGCAGATGAACTCAACAATAAGCACACCATCT
TTGGAAAGGTTACAGGGGATACAGTGTACAACATGCTACGCCTGACAGAAGTAGACATCGATGA
TGAAGAAAGACCCCGCAATCCACATAGAATCAAGAGTTGTGAGGTTTTGTTTAACCCTTTTGAT
GACATCATTCCAAGGGAAATTAAAAAGCCCAAGAAAGAGAAGGCAGAGGAAGAAATCAAGAAAT
TGAAACCCAAAGGCACAAAAAATTTTAGTTTACTGTCTTTTGGAGAAGAAGCTGAGGAGGAGGA
GGAGGAAGTGAACCGAGTCAGTCAGAGCATGAAGGGGAGAAGTAAAAGCAGCCATGACCTGCTG
AAGGACGATCCGCATCTCAGCTCTGTCCCGGCCGTCGAAAGTGAAAAAGATGATGCAACAGGAG
ATTTAGAAGATGATGCTGAAGATGACAGTGTAGAGCATGATGGCTCCATGGAGGAGGATGAGAA
GAACCTGATGAGAGAAAGAATCGCAAAACGGTTGAAGAAAGATGCAAGTGCCAATGTGAAGTCA
GCCGGAGATGGGGAGAAGAAGCCCGCAAGCCGAAGTGAAGAGCTCAGAAAAGAAGCAAGGCAAT
TAAAGCGGGAACTCTTAGCAGCAAAACAGAAGAAAGAAAGTGCCACAAAAGCAGAGAAAGGAAG
TGAAGAGGAAGAAGCTGTCCCAGATGGCCCTGTTGCAGAGTACAGGCGAGAAAAGCAGAAGTAT
GAAGCTTTGAGGAAGCAACAGCCCAAGAAGGGAACTTCCCGAGAGGATCAGACCCTGGCACTGC
TGAGCCAGTTTAAATCTAAGCTCACTCAAGCCATCACCGAAATGCCTGAAAACTGTGCTGAAGC
AGAAGTTGAAGATGACGAAGGCTGGATGTCCCACGTGCTCCAGTTTGAAGACAAGACCCGGAAG
GTGAAAGACGCAAGCATGCAGGACTCAGACACGTTTGAGATCTATGATCCCCGGAATCCAGTGA
ACAAAAGAAGGAGGGAGGAAAGCAAAAAACTGCTGAGAGAGAAAAAGGAAAGGCGGTGAGCGGA
GCCGTGATGCCGGAAGCGGTGGCGCCTGCCAGGAATGTCGTGTGGGAAATGTGTCAGGGCCTGT
GTTCTGGTGTTCAGAAAACAGGTATCTCCTTTTGTAAATTTGAAATGATGTAAGCAAATGCTTT
TGGTTACTGATAATTGACCTTTTATATTACTAAATCTGAAATAAAACCAGTTTCTTTCTAGTTT
AAATGTTAAGTTTGCAGATTGCATAGACCTGTCTGTCTATGCCCCCTACCCTGAGATGTGTGAA
GGAGCCTTGTTCAGATTTTTATAAGAGAAACTCACAGAAAGAATAAGGGAAACTTCCCTGATAC
TTTAATATAAAATCAAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017590950 ⟹ XP_017446439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,498,613 - 37,709,691 (-)	NCBI
mRatBN7.2	2	35,764,674 - 35,975,906 (-)	NCBI
Rnor_6.0	2	34,716,420 - 34,923,060 (-)	NCBI

Sequence:

show sequence

TTCGGCCAGCTTCCGGAGGTGAGTGCTATCTGCAAACACCGGACCTGGACGCAGCACCCGGATT
TACGGATTGGCCGTTTAGCTAGTATTATGAATGACACGACAAATTCTCTAAAGTTGCAGAGGTC
TTATAGTCTTTTCTAGTTTCCTGAAGAACAGGGACATCCCCCCTCCCGGAGTTAGCGGTGCTGC
GATCCGGGAGCAACATGGCGACGTCCATGAGGGGATAGTTTGGGGGAGTAGCTAGTGCTTAGTA
CGGTTGTCCTGTCTAACTCTGACCGAGTAAAGTTTTCCCCAAGTACCCAGGTAAAGAATTGTCT
ACTAACAGGTGGGCATCGTCAGAGACCCGCCATTCGCTCGCGGCCACACTAAGGAACGGAGTCT
TGAGCAGTGAGCAAGATGAGTAACATCTACATCCAGGAGCCGCCCACGAATGGGAAGGTTTTAT
TGAAAACTACGGCTGGAGATATTGACATAGAGCTGTGGTCAAAAGAGGCCCCTAAAGCATGCAG
AAATTTCATTCAGCTTTGTTTGGAGGCCTACTATGACAACACCATTTTTCATAGAGTCGTACCT
GGCTTCATAGTCCAAGGTGGAGATCCCACAGGCACCGGGACTGGTGGAGAATCTGTCTATGGAG
CCCCATTCAAGGATGAGTTTCACTCACGGTTGCGTTTTAATAGGAGAGGACTGGTTGCCATGGC
AAATGCCGGTCCACATGATAATGGCAGCCAGTTTTTCTTTACCCTGGGTCGAGCAGATGAACTC
AACAATAAGCACACCATCTTTGGAAAGGTTACAGGGGATACAGTGTACAACATGCTACGCCTGA
CAGAAGTAGACATCGATGATGAAGAAAGACCCCGCAATCCACATAGAATCAAGAGTTGTGAGGT
TTTGTTTAACCCTTTTGATGACATCATTCCAAGGGAAATTAAAAAGCCCAAGAAAGAGAAGGCA
GAGGAAGAAATCAAGAAATTGAAACCCAAAGGCACAAAAAATTTTAGTTTACTGTCTTTTGGAG
AAGAAGCTGAGGAGGAGGAGGAGGAAGTGAACCGAGTCAGTCAGAGCATGAAGGGGAGAAGTAA
AAGCAGCCATGACCTGCTGAAGGACGATCCGCATCTCAGCTCTGTCCCGGCCGTCGAAAGTGAA
AAAGATGATGCAACAGGAGATTTAGAAGATCTTTCACAGGATGCTGAAGATGACAGTGTAGAGC
ATGATGGCTCCATGGAGGAGGATGAGAAGAACCTGATGAGAGAAAGAATCGCAAAACGGTTGAA
GAAAGATGCAAGTGCCAATGTGAAGTCAGCCGGAGATGGGGAGAAGAAGCCCGCAAGCCGAAGT
GAAGAGCTCAGAAAAGAAGCAAGGCAATTAAAGCGGGAACTCTTAGCAGCAAAACAGAAGAAAG
AAAGTGCCACAAAAGCAGAGAAAGGAAGTGAAGAGGAAGAAGCTGTCCCAGATGGCCCTGTTGC
AGAGTACAGGCGAGAAAAGCAGAAGTATGAAGCTTTGAGGAAGCAACAGCCCAAGAAGGGAACT
TCCCGAGAGGATCAGACCCTGGCACTGCTGAGCCAGTTTAAATCTAAGCTCACTCAAGCCATCA
CCGAAATGCCTGAAAACTGTGCTGAAGCAGAAGTTGAAGATGACGAAGGCTGGATGTCCCACGT
GCTCCAGTTTGAAGACAAGACCCGGAAGGTGAAAGACGCAAGCATGCAGGACTCAGACACGTTT
GAGATCTATGATCCCCGGAATCCAGTGAACAAAAGAAGGAGGGAGGAAAGCAAAAAACTGCTGA
GAGAGAAAAAGGAAAGGCGGTGAGCGGAGCCGTGATGCCGGAAGCGGTGGCGCCTGCCAGGAAT
GTCGTGTGGGAAATGTGTCAGGGCCTGTGTTCTGGTGTTCAGAAAACAGGTATCTCCTTTTGTA
AATTTGAAATGATGTAAGCAAATGCTTTTGGTTACTGATAATTGACCTTTTATATTACTAAATC
TGAAATAAAACCAGTTTCTTTCTAGTTTAAATGTTAAGTTTGCAGATTGCATAGACCTGTCTGT
CTATGCCCCCTACCCTGAGATGTGTGAAGGAGCCTTGTTCAGATTTTTATAAGAGAAACTCACA
GAAAGAATAAGGGAAACTTCCCTGATACTTTAATATAAAATCAAAATTATAAAATAAAAACATT
AACATTGATGCTTTTTTTTGCATATAAACATATAAAAATAGCCAGGCCAGTAGGACTGACTCCT
GCTTTAATTCATGAGGAGCCCACAGGCCAGTTAATATTCACTCTGCGAGCCCAGTGCCTGGATG
CTAAGAGTGCTTCAAGACAGTAGCACTCTACTGCATGCTCTCCAAACACCACAGCCTGATGCTG
GGCCCCCTGCTGCTCCCGCCCTCGTCAGCTCGCCAACATCAGGAGCAAGTGGGTGCACAGAGTC
CAGCACCAGTAGAACTCATCAAGAATCTAGCCTTTGATACACTCATTCACACTAGGTATTTCTG
TTCCCTATATTTAGTTCTGAACTCTGCATGCTAAAATTGTACACCAGACAGACTTGCTTCAGTC
ACCTAATAAAACCTCACCAGGCACATCTCTTCAGAAGAAGTAATGAAATCGGCTTCCTCTTCCT
AAGGCCGGCTCTTCAGCGCGATCCCAGGTGCAGCACTGGCAGCAGACATAGGATGGAGAAATGC
TAGCCCCATCCTGGCTGCCCGTCACCACCACCACCCTCCAAACTACCAGGGTCTAGAGAATTAA
AACATCACAGCCCGTGGCCAGTGAGTTAGAATCCGAGACCTGTACACTAAAGAAATTTTCAGAC
ATTGTTCAAAATGAGTATGTGCTAACATCCATGGAAGCCTCCTAGAGTACAAATATGTCGTTTC
CTAGCCCACTGTGGGATATTTCCCAGAAGTGAAGACCACCCAGCTCTGGGCATGCATCTAAAGG
AGGGGCATGTGCCTAGCGTGAACCAAGCCCTGAACTAGATTCTCAGCATAGAAAACAGTAAGTT
AGCAGAACCATATTACTATTTCTTAGAAGGAACAAACAAAACCAGATCTATAAAATGTTTAAGC
ATATGACAGATTATTTATATCATTGTAGATGTGCACATATGTAAAACAAAAATGTGAAAATATG
TAAAACTAGTGATTACCTCTGAGGATGAAAAAGAAATGCCCAGGTCTCACTCGTGTGCGGGCTG
CGTAACAGTTCTCAGCACCCAACCTTGCACATGCTGGTGTGCCCTTCATGGCTCTCACCAGAAC
CTGAGGAGAAGACAGGACCCCCAGGATCCAGAACACCCTCGTTTTGAATGAAGATGGAGAACAT
TTCAGAGAAAAGAGAGAGGTGGTAGAAGTACTCCGAGCATGTCAGCCGGCTCAGAATTTTGGAC
AACTGAGGCAGGATTTGGTTGTGCAAACGCAGCACTGCCGTCATTTCTCGTTGGCATACCTTCG
TTGTGCATGGTGATTCCTCGCCCATACCCAGCCTCCCTCCTCTCCCCAGCCCGTTCCAGCCACT
AGCAGACTCATGTATACTTTGGTATCCCATATACTTACACAGTCGTATATGTTTATGTAAAATC
TATGGTCCACGAGTTAGAGCAAGCATCGTATTTCTCTCCCTAGGTCTGCATGACTTTACAGAAT
ATGCTCTGCCACTATATCCATTTTCCAGCAGACGGCTTCAGTTTACAGCTGATGACACCCTGTC
CTACATGCGTACATGTTTTCTCTACTCACTCTCTGCTGACAGCTAGGCGGAGTCCATCTTCGCA
GACATTATGAAATGTCTGAGCCCATGTGTGTTGAAACACCGTCTCTGCCATTTTCCCTCTGATG
CGGCCACTTCCTCCAATTCCATATAAGCCCAACAGAATTCCCTAGTGCTCTCTGCAGGGACCAG
TCAGAGAATAATTTCAGTTTTTAAAAAAGCAGTTTGTGGTTTTTTTGTTTTTGAAGTTCTAATT
TAATTATCTCATTTGCCCCTTTCTTTTCTCCCTTCAAACCCTTCTATACTTGGTCTTTTTCAAG
TTCATGGCTTCTGTTTTCATCAATCTTTACTATATACATAATGTGTGTATATATCCATGTGTAT
ATATATCTGCATGTGTATACATACATATATATGTACATACACACACACACACACACACGTCTAA
ATTTCTAGTCATAACCTGCTTGGTCTGTATAATGTTGTTTGTATATATGTCTTTGGTATTGGAT
AACCAATTGGTGTGCTCTTCACTGAAGAAGACAATTTCTTCCACTTCCAGTATTTCTTAGTTCT
TTGTGTAGGCTTGAGGCCTTTTGAGTTCACTGCCACCACCACCCTCATCTACATTGGCATCTAT
TTTTATTGTCCTTTAAAGCACCTGCTTGGGCGGCCATATTGGTGTGACTTTGTCAGTGTAGCTT
CTGACATTACTAGGAGCACAACCTAACATAGAACTCTCTGGTCCTCTGGCTGTTAGACTCTTTC
TGCCCCCTCTTCTCCGTGAAAGAAAGAAAGTCGAATGACAAAATTTAGATTAGTTTAGCTAAAT
GTTCATCTTACTTTAACTGCAAAAAGCCAAAGGTTCTGAAATGTAGTAGTAACTAGAGTATTGT
GGGATTTCACCATTACAGATTTCACTAGATAAGTAATTTCCAAAAAGAATAGGAAACTAAGTTT
GGTATTATTAAATATGTTTGCAGTCACAAGGAAACATTTAGGCCAAGTGAATGAATGAACTGCA
AAAAAATATATATATTAAATTAAAAACATGAGAGCATATTAAAGACATGGCCTTTAAACTTCAC
TTCATTTTTATATTTGGGCTTGTTTTATGTTTATGTGTTGTGGTCAAGGATATTATCCTGAGAC
CAAGCATCCCGTCTGAGCTCTTGTTCTTTGCCTGTGACAACACTAGAAGGAGAAAACAACTGGT
GTTTTGTTCTAGCTGTGGCCATGCCTTCCACTTTGGGTGAAGCTGGTGGCAGGTTAAAAGGTCA
AACCAGCCCTTGGGTTTTCCTTTCTCAAGGGGTAATTGAAGCTAATGCAGATCTGTCTGGGATT
TTTCATGTAATAAAAATGCACATTGTCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013217	(Get FASTA)	NCBI Sequence Viewer
	XP_017446439	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83774	(Get FASTA)	NCBI Sequence Viewer
	EDM10270	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070377
	ENSRNOP00000109063
GenBank Protein	Q5XIB2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013217 ⟸ NM_001013199

- UniProtKB:

Q5XIB2 (UniProtKB/Swiss-Prot), A0A8L2Q9Q6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQ
GGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHT
IFGKVTGDTVYNMLRLTEVDIDDEERPRNPHRIKSCEVLFNPFDDIIPREIKKPKKEKAEEEIK
KLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGRSKSSHDLLKDDPHLSSVPAVESEKDDAT
GDLEDDAEDDSVEHDGSMEEDEKNLMRERIAKRLKKDASANVKSAGDGEKKPASRSEELRKEAR
QLKRELLAAKQKKESATKAEKGSEEEEAVPDGPVAEYRREKQKYEALRKQQPKKGTSREDQTLA
LLSQFKSKLTQAITEMPENCAEAEVEDDEGWMSHVLQFEDKTRKVKDASMQDSDTFEIYDPRNP
VNKRRREESKKLLREKKERR

hide sequence

RefSeq Acc Id:	XP_017446439 ⟸ XM_017590950
- Peptide Label:	isoform X1
- UniProtKB:	A6I5G2 (UniProtKB/TrEMBL), A0A8L2Q9Q6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQ GGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHT IFGKVTGDTVYNMLRLTEVDIDDEERPRNPHRIKSCEVLFNPFDDIIPREIKKPKKEKAEEEIK KLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGRSKSSHDLLKDDPHLSSVPAVESEKDDAT GDLEDLSQDAEDDSVEHDGSMEEDEKNLMRERIAKRLKKDASANVKSAGDGEKKPASRSEELRK EARQLKRELLAAKQKKESATKAEKGSEEEEAVPDGPVAEYRREKQKYEALRKQQPKKGTSREDQ TLALLSQFKSKLTQAITEMPENCAEAEVEDDEGWMSHVLQFEDKTRKVKDASMQDSDTFEIYDP RNPVNKRRREESKKLLREKKERR hide sequence

Ensembl Acc Id:

ENSRNOP00000070377 ⟸ ENSRNOT00000090060

Ensembl Acc Id:

ENSRNOP00000017832 ⟸ ENSRNOT00000017832

Ensembl Acc Id:

ENSRNOP00000109063 ⟸ ENSRNOT00000143757

Protein Domains

PPIase cyclophilin-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIB2-F1-model_v2	AlphaFold	Q5XIB2	1-468	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310697	AgrOrtholog
BioCyc Gene	G2FUF-54546	BioCyc
Ensembl Genes	ENSRNOG00000013252	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000090060	ENTREZGENE
	ENSRNOT00000143757	ENTREZGENE
Gene3D-CATH	2.40.100.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7193421	IMAGE-MGC_LOAD
InterPro	Cyclophilin-like_dom_sf	UniProtKB/Swiss-Prot
	Cyclophilin-type_PPIase_CS	UniProtKB/Swiss-Prot
	Cyclophilin-type_PPIase_dom	UniProtKB/Swiss-Prot
	Cyclophilin_A-like	UniProtKB/Swiss-Prot
KEGG Report	rno:361887	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94726	IMAGE-MGC_LOAD
NCBI Gene	361887	ENTREZGENE
PANTHER	PTHR45625	UniProtKB/Swiss-Prot
	SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG	UniProtKB/Swiss-Prot
Pfam	Pro_isomerase	UniProtKB/Swiss-Prot
PhenoGen	Cwc27	PhenoGen
PRINTS	CSAPPISMRASE	UniProtKB/Swiss-Prot
PROSITE	CSA_PPIASE_1	UniProtKB/Swiss-Prot
	CSA_PPIASE_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013252	RatGTEx
Superfamily-SCOP	SSF50891	UniProtKB/Swiss-Prot
UniProt	A0A0G2JXR7_RAT	UniProtKB/TrEMBL
	A0A8L2Q9Q6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LUY4_RAT	UniProtKB/TrEMBL
	A6I5G2	ENTREZGENE, UniProtKB/TrEMBL
	CWC27_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-29	Cwc27	CWC27 spliceosome associated cyclophilin	Cwc27	CWC27 spliceosome-associated protein homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-09	Cwc27	CWC27 spliceosome-associated protein homolog	Cwc27	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-01	Cwc27	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	Sdccag10	serologically defined colon cancer antigen 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Sdccag10	serologically defined colon cancer antigen 10	Sdccag10_predicted	serologically defined colon cancer antigen 10 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Sdccag10_predicted	serologically defined colon cancer antigen 10 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM