Cwc27 (CWC27 spliceosome associated cyclophilin) - Rat Genome Database

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Gene: Cwc27 (CWC27 spliceosome associated cyclophilin) Rattus norvegicus
Analyze
Symbol: Cwc27
Name: CWC27 spliceosome associated cyclophilin
RGD ID: 1310697
Description: Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in nucleoplasm. Predicted to be part of U2-type precatalytic spliceosome and catalytic step 2 spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CWC27 spliceosome-associated protein homolog; CWC27 spliceosome-associated protein homolog (S. cerevisiae); LOC361887; peptidyl-prolyl cis-trans isomerase CWC27 homolog; peptidyl-prolyl cis-trans isomerase SDCCAG10; PPIase CWC27; PPIase SDCCAG10; probable inactive peptidyl-prolyl cis-trans isomerase CWC27 homolog; Sdccag10; serologically defined colon cancer antigen 10; spliceosome-associated protein CWC27 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8237,498,462 - 37,709,691 (-)NCBIGRCr8
mRatBN7.2235,764,674 - 35,975,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl235,764,686 - 35,975,872 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx242,883,218 - 43,086,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,941,921 - 41,144,774 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0235,794,078 - 35,998,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0234,716,420 - 34,923,060 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl234,719,344 - 34,923,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0253,846,098 - 54,048,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4235,567,205 - 35,825,390 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1235,487,577 - 35,745,759 (-)NCBI
Celera231,727,272 - 31,931,733 (-)NCBICelera
Cytogenetic Map2q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11555636   PMID:11991638   PMID:20676357   PMID:29360106  


Genomics

Comparative Map Data
Cwc27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8237,498,462 - 37,709,691 (-)NCBIGRCr8
mRatBN7.2235,764,674 - 35,975,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl235,764,686 - 35,975,872 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx242,883,218 - 43,086,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,941,921 - 41,144,774 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0235,794,078 - 35,998,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0234,716,420 - 34,923,060 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl234,719,344 - 34,923,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0253,846,098 - 54,048,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4235,567,205 - 35,825,390 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1235,487,577 - 35,745,759 (-)NCBI
Celera231,727,272 - 31,931,733 (-)NCBICelera
Cytogenetic Map2q13NCBI
CWC27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38564,768,918 - 65,018,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl564,766,368 - 65,102,412 (+)EnsemblGRCh38hg38GRCh38
GRCh37564,064,745 - 64,314,590 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36564,100,511 - 64,350,346 (+)NCBINCBI36Build 36hg18NCBI36
Build 34564,100,549 - 64,350,159NCBI
Celera561,061,675 - 61,311,486 (+)NCBICelera
Cytogenetic Map5q12.3NCBI
HuRef561,019,332 - 61,269,130 (+)NCBIHuRef
CHM1_1564,064,647 - 64,314,462 (+)NCBICHM1_1
T2T-CHM13v2.0565,589,037 - 65,838,886 (+)NCBIT2T-CHM13v2.0
Cwc27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913104,767,648 - 104,953,649 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13104,767,648 - 104,953,650 (-)EnsemblGRCm39 Ensembl
GRCm3813104,631,140 - 104,817,110 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13104,631,140 - 104,817,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713105,421,407 - 105,607,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613105,751,522 - 105,937,524 (-)NCBIMGSCv36mm8
Celera13109,026,765 - 109,210,743 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.64NCBI
Cwc27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554464,032,347 - 4,230,444 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554464,032,493 - 4,230,444 (-)NCBIChiLan1.0ChiLan1.0
CWC27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2448,899,860 - 49,150,723 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1547,053,491 - 47,304,305 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0548,984,546 - 49,235,398 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1550,634,936 - 50,885,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl550,635,204 - 50,879,742 (-)Ensemblpanpan1.1panPan2
CWC27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1250,654,977 - 50,847,055 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl250,655,037 - 50,846,604 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha247,611,670 - 47,803,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0251,139,348 - 51,338,035 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl251,138,432 - 51,340,825 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,199,895 - 48,392,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,995,827 - 49,187,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0249,883,229 - 50,075,682 (+)NCBIUU_Cfam_GSD_1.0
Cwc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213195,152,522 - 195,369,240 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364804,090,005 - 4,305,632 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364804,090,005 - 4,305,770 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CWC27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1643,345,838 - 43,593,470 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11643,346,295 - 43,593,474 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21646,762,964 - 46,875,589 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21646,572,560 - 46,628,754 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CWC27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1460,953,549 - 61,206,967 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl460,953,397 - 61,207,635 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660499,588,004 - 9,845,171 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cwc27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248154,863,908 - 5,082,347 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248154,863,902 - 5,082,308 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cwc27
1146 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000017832
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat

Markers in Region
D2Got374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2235,899,676 - 35,899,811 (+)MAPPERmRatBN7.2
Rnor_6.0234,849,804 - 34,849,938NCBIRnor6.0
Rnor_5.0253,973,324 - 53,973,458UniSTSRnor5.0
RGSC_v3.4235,748,417 - 35,748,551UniSTSRGSC3.4
Celera231,856,232 - 31,856,366UniSTS
Cytogenetic Map2q13UniSTS
RH131935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2235,764,768 - 35,764,979 (+)MAPPERmRatBN7.2
Rnor_6.0234,719,417 - 34,719,627NCBIRnor6.0
Rnor_5.0253,846,175 - 53,846,385UniSTSRnor5.0
RGSC_v3.4235,567,282 - 35,567,492UniSTSRGSC3.4
Celera231,727,349 - 31,727,559UniSTS
RH 3.4 Map2148.7UniSTS
Cytogenetic Map2q13UniSTS
RH144426  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2235,796,904 - 35,797,019 (+)MAPPERmRatBN7.2
Rnor_6.0234,750,567 - 34,750,681NCBIRnor6.0
Rnor_5.0253,877,325 - 53,877,439UniSTSRnor5.0
RGSC_v3.4235,601,419 - 35,601,533UniSTSRGSC3.4
Celera231,758,959 - 31,759,073UniSTS
RH 3.4 Map2151.6UniSTS
Cytogenetic Map2q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 26 16 19 16 57 34 39 11
Low 1 23 31 25 25 8 11 17 1 2 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000017832   ⟹   ENSRNOP00000017832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl235,764,843 - 35,975,731 (-)Ensembl
Rnor_6.0 Ensembl234,719,344 - 34,922,721 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090060   ⟹   ENSRNOP00000070377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl235,764,686 - 35,975,872 (-)Ensembl
Rnor_6.0 Ensembl234,722,690 - 34,923,024 (-)Ensembl
RefSeq Acc Id: NM_001013199   ⟹   NP_001013217
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,498,462 - 37,709,338 (-)NCBI
mRatBN7.2235,764,692 - 35,975,579 (-)NCBI
Rnor_6.0234,719,340 - 34,922,721 (-)NCBI
Rnor_5.0253,846,098 - 54,048,834 (-)NCBI
RGSC_v3.4235,567,205 - 35,825,390 (-)RGD
Celera231,727,272 - 31,931,733 (-)RGD
Sequence:
RefSeq Acc Id: XM_017590950   ⟹   XP_017446439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,498,613 - 37,709,691 (-)NCBI
mRatBN7.2235,764,674 - 35,975,906 (-)NCBI
Rnor_6.0234,716,420 - 34,923,060 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001013217 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446439 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83774 (Get FASTA)   NCBI Sequence Viewer  
  EDM10270 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017832
  ENSRNOP00000017832.6
  ENSRNOP00000070377
  ENSRNOP00000070377.2
GenBank Protein Q5XIB2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013217   ⟸   NM_001013199
- UniProtKB: Q5XIB2 (UniProtKB/Swiss-Prot),   A0A8L2Q9Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446439   ⟸   XM_017590950
- Peptide Label: isoform X1
- UniProtKB: A6I5G2 (UniProtKB/TrEMBL),   A0A8L2Q9Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070377   ⟸   ENSRNOT00000090060
RefSeq Acc Id: ENSRNOP00000017832   ⟸   ENSRNOT00000017832
Protein Domains
PPIase cyclophilin-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIB2-F1-model_v2 AlphaFold Q5XIB2 1-468 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310697 AgrOrtholog
BioCyc Gene G2FUF-54546 BioCyc
Ensembl Genes ENSRNOG00000013252 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017832 ENTREZGENE
  ENSRNOT00000017832.8 UniProtKB/TrEMBL
  ENSRNOT00000090060.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7193421 IMAGE-MGC_LOAD
InterPro Cyclophilin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclophilin_A-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361887 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94726 IMAGE-MGC_LOAD
NCBI Gene 361887 ENTREZGENE
PANTHER PTHR45625 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pro_isomerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cwc27 PhenoGen
PRINTS CSAPPISMRASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013252 RatGTEx
Superfamily-SCOP SSF50891 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JXR7_RAT UniProtKB/TrEMBL
  A0A8L2Q9Q6 ENTREZGENE, UniProtKB/TrEMBL
  A6I5G2 ENTREZGENE, UniProtKB/TrEMBL
  CWC27_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-29 Cwc27  CWC27 spliceosome associated cyclophilin  Cwc27  CWC27 spliceosome-associated protein homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-09 Cwc27  CWC27 spliceosome-associated protein homolog  Cwc27  CWC27 spliceosome-associated protein homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Cwc27  CWC27 spliceosome-associated protein homolog (S. cerevisiae)  Sdccag10  serologically defined colon cancer antigen 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sdccag10  serologically defined colon cancer antigen 10  Sdccag10_predicted  serologically defined colon cancer antigen 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sdccag10_predicted  serologically defined colon cancer antigen 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED