Hars1 (histidyl-tRNA synthetase 1) - Rat Genome Database

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Pathways
Gene: Hars1 (histidyl-tRNA synthetase 1) Rattus norvegicus
Analyze
Symbol: Hars1
Name: histidyl-tRNA synthetase 1
RGD ID: 1310695
Description: Predicted to enable several functions, including ATP binding activity; histidine-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in histidyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease, axonal type 2W and Usher syndrome type 3B. Orthologous to human HARS1 (histidyl-tRNA synthetase 1); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; aminoacyl-tRNA biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: dead end homolog 1; dead end homolog 1 (zebrafish); Dnd1; Hars; histidine--tRNA ligase, cytoplasmic; histidyl-tRNA synthetase; histidyl-tRNA synthetase, cytoplasmic; LOC307492
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,655,669 - 28,672,712 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,655,671 - 28,672,712 (-)EnsemblGRCr8
mRatBN7.21828,381,649 - 28,398,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,381,655 - 28,398,740 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,508,798 - 28,525,835 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,270,872 - 29,287,915 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,606,100 - 28,623,139 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,611,545 - 29,629,087 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,611,547 - 29,629,087 (-)Ensemblrn6Rnor6.0
Rnor_5.01829,315,352 - 29,332,458 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,467,648 - 29,483,037 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1828,102,201 - 28,119,274 (-)NCBICelera
RGSC_v3.11829,494,295 - 29,509,683 (-)NCBI
Cytogenetic Map18p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dimethoxyphenol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
benzatropine  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
clobetasol  (ISO)
clozapine  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
glyphosate  (EXP)
haloperidol  (ISO)
imidacloprid  (EXP)
ionomycin  (ISO)
ivermectin  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
Nutlin-3  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pyrogallol  (ISO)
pyrrolidine dithiocarbamate  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21464306   PMID:22958643   PMID:29235198  


Genomics

Comparative Map Data
Hars1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,655,669 - 28,672,712 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,655,671 - 28,672,712 (-)EnsemblGRCr8
mRatBN7.21828,381,649 - 28,398,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,381,655 - 28,398,740 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,508,798 - 28,525,835 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,270,872 - 29,287,915 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,606,100 - 28,623,139 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,611,545 - 29,629,087 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,611,547 - 29,629,087 (-)Ensemblrn6Rnor6.0
Rnor_5.01829,315,352 - 29,332,458 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,467,648 - 29,483,037 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1828,102,201 - 28,119,274 (-)NCBICelera
RGSC_v3.11829,494,295 - 29,509,683 (-)NCBI
Cytogenetic Map18p11NCBI
HARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,673,905 - 140,691,370 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,673,035 - 140,691,537 (-)Ensemblhg38GRCh38
GRCh375140,053,490 - 140,070,955 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,033,674 - 140,051,155 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345140,033,674 - 140,051,155NCBI
Celera5136,130,237 - 136,147,719 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,198,731 - 135,216,563 (-)NCBIHuRef
CHM1_15139,486,739 - 139,504,562 (-)NCBICHM1_1
T2T-CHM13v2.05141,199,302 - 141,216,757 (-)NCBIT2T-CHM13v2.0
Hars1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,899,581 - 36,916,258 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,899,581 - 36,916,258 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381836,766,528 - 36,783,205 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,766,528 - 36,783,205 (-)Ensemblmm10GRCm38
MGSCv371836,926,182 - 36,942,859 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361836,892,504 - 36,909,094 (-)NCBIMGSCv36mm8
Celera1837,218,592 - 37,235,221 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Hars1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541819,346 - 30,514 (+)Ensembl
ChiLan1.0NW_00495541819,346 - 30,514 (+)NCBIChiLan1.0ChiLan1.0
HARS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,931,745 - 135,949,264 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,071,296 - 134,088,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,038,575 - 136,056,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,154,552 - 142,172,371 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,154,552 - 142,172,371 (-)EnsemblpanPan2panpan1.1
HARS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,828,243 - 35,843,615 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,828,260 - 35,843,583 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,867,230 - 32,882,606 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0236,283,853 - 36,299,236 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,283,855 - 36,299,210 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,336,188 - 33,351,339 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,203,967 - 34,219,341 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,956,682 - 34,972,058 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,986,346 - 152,001,170 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,610,306 - 9,625,551 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,610,335 - 9,625,203 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HARS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,385,872 - 142,401,208 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12142,387,563 - 142,401,232 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,331,743 - 148,345,418 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,307,573 - 43,324,140 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,307,415 - 43,323,767 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603434,533,071 - 34,576,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hars1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,423,342 - 33,435,721 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474333,424,705 - 33,435,767 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hars1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1157,597,631 - 7,614,029 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hars1
78 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:46
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000039291
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH143518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,414,064 - 54,414,339 (+)MAPPERmRatBN7.2
Rnor_6.01561,299,691 - 61,299,965NCBIRnor6.0
Rnor_5.01564,964,332 - 64,964,606UniSTSRnor5.0
RGSC_v3.41560,155,584 - 60,155,858UniSTSRGSC3.4
Celera1554,003,757 - 54,004,031UniSTS
RH 3.4 Map15458.3UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map15q11UniSTS
Hars  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,415,320 - 54,415,449 (+)MAPPERmRatBN7.2
mRatBN7.21828,382,080 - 28,382,413 (+)MAPPERmRatBN7.2
Rnor_6.01829,611,977 - 29,612,309NCBIRnor6.0
Rnor_6.01561,300,947 - 61,301,075NCBIRnor6.0
Rnor_5.01829,315,784 - 29,316,116UniSTSRnor5.0
Rnor_5.01564,965,588 - 64,965,716UniSTSRnor5.0
RGSC_v3.41829,468,080 - 29,468,412UniSTSRGSC3.4
RGSC_v3.41560,156,840 - 60,156,968UniSTSRGSC3.4
Celera1554,005,013 - 54,005,141UniSTS
Celera1828,102,633 - 28,102,965UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map15q11UniSTS
Cytogenetic Map15q11-q12UniSTS
RH130568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,381,729 - 28,381,937 (+)MAPPERmRatBN7.2
mRatBN7.21554,415,592 - 54,415,947 (+)MAPPERmRatBN7.2
Rnor_6.01561,301,219 - 61,301,573NCBIRnor6.0
Rnor_6.01829,611,626 - 29,611,833NCBIRnor6.0
Rnor_5.01829,315,433 - 29,315,640UniSTSRnor5.0
Rnor_5.01564,965,860 - 64,966,214UniSTSRnor5.0
RGSC_v3.41560,157,112 - 60,157,466UniSTSRGSC3.4
RGSC_v3.41829,467,729 - 29,467,936UniSTSRGSC3.4
Celera1828,102,282 - 28,102,489UniSTS
Celera1554,005,285 - 54,005,639UniSTS
RH 3.4 Map18417.7UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map15q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039291   ⟹   ENSRNOP00000034118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,655,671 - 28,672,712 (-)Ensembl
mRatBN7.2 Ensembl1828,381,655 - 28,398,740 (-)Ensembl
Rnor_6.0 Ensembl1829,611,547 - 29,629,087 (-)Ensembl
RefSeq Acc Id: NM_001025414   ⟹   NP_001020585
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,655,669 - 28,672,712 (-)NCBI
mRatBN7.21828,381,649 - 28,398,699 (-)NCBI
Rnor_6.01829,611,545 - 29,629,087 (-)NCBI
Rnor_5.01829,315,352 - 29,332,458 (-)NCBI
RGSC_v3.41829,467,648 - 29,483,037 (-)RGD
Celera1828,102,201 - 28,119,274 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001020585 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97969 (Get FASTA)   NCBI Sequence Viewer  
  EDL76319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034118
  ENSRNOP00000034118.7
RefSeq Acc Id: NP_001020585   ⟸   NM_001025414
- UniProtKB: Q4QQV4 (UniProtKB/TrEMBL),   F1LPB1 (UniProtKB/TrEMBL),   A0A8J8YFS5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000034118   ⟸   ENSRNOT00000039291
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQV4-F1-model_v2 AlphaFold Q4QQV4 1-508 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700730
Promoter ID:EPDNEW_R11254
Type:multiple initiation site
Name:Hars_1
Description:histidyl-tRNA synthetase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,629,076 - 29,629,136EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310695 AgrOrtholog
BioCyc Gene G2FUF-7858 BioCyc
BioCyc Pathway TRNA-CHARGING-PWY [tRNA charging] BioCyc
BioCyc Pathway Image TRNA-CHARGING-PWY BioCyc
Ensembl Genes ENSRNOG00000028105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039291 ENTREZGENE
  ENSRNOT00000039291.7 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.800 UniProtKB/TrEMBL
  Bira Bifunctional Protein, Domain 2 UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442005 IMAGE-MGC_LOAD
InterPro aa-tRNA-synth_II UniProtKB/TrEMBL
  aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  Anticodon-bd UniProtKB/TrEMBL
  Anticodon-bd_dom_sf UniProtKB/TrEMBL
  His-tRNA-ligase UniProtKB/TrEMBL
  His-tRNA_synth_IIA UniProtKB/TrEMBL
  HisRS-like_core UniProtKB/TrEMBL
  HisRS_anticodon UniProtKB/TrEMBL
  S15_NS1_RNA-bd UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
KEGG Report rno:307492 UniProtKB/TrEMBL
MGC_CLONE MGC:116099 IMAGE-MGC_LOAD
NCBI Gene 307492 ENTREZGENE
PANTHER HISTIDINE--TRNA LIGASE, CYTOPLASMIC UniProtKB/TrEMBL
  HISTIDYL-TRNA SYNTHETASE UniProtKB/TrEMBL
Pfam HGTP_anticodon UniProtKB/TrEMBL
  tRNA-synt_His UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
PhenoGen Hars1 PhenoGen
PIRSF His-tRNA_synth UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_II UniProtKB/TrEMBL
  WHEP_TRS_1 UniProtKB/TrEMBL
  WHEP_TRS_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028105 RatGTEx
SMART WHEP-TRS UniProtKB/TrEMBL
Superfamily-SCOP Class II aaRS ABD-related UniProtKB/TrEMBL
  S15/NS1_bind UniProtKB/TrEMBL
  SSF55681 UniProtKB/TrEMBL
UniProt A0A8J8YFS5 ENTREZGENE, UniProtKB/TrEMBL
  F1LPB1 ENTREZGENE
  Q4QQV4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1LPB1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Hars1  histidyl-tRNA synthetase 1  Hars  histidyl-tRNA synthetase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Hars  histidyl-tRNA synthetase  Dnd1  dead end homolog 1 (zebrafish)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Dnd1  dead end homolog 1 (zebrafish)  Dnd1_predicted  dead end homolog 1 (zebrafish) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dnd1_predicted  dead end homolog 1 (zebrafish) (predicted)      Symbol and Name status set to approved 70820 APPROVED