Rbm33 (RNA binding motif protein 33) - Rat Genome Database

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Gene: Rbm33 (RNA binding motif protein 33) Rattus norvegicus
Analyze
Symbol: Rbm33
Name: RNA binding motif protein 33
RGD ID: 1310651
Description: Predicted to enable N6-methyladenosine-containing RNA reader activity and lncRNA binding activity. Predicted to be involved in RNA export from nucleus. Predicted to act upstream of or within mRNA destabilization. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human RBM33 (RNA binding motif protein 33); INTERACTS WITH 17beta-estradiol; acetamide; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC108348119; LOC362297; RGD1310651; RNA-binding protein 33; RNA-binding protein 33-like; similar to hypothetical protein MGC20460
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr847,714,660 - 7,825,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl47,720,180 - 7,820,882 (-)EnsemblGRCr8
mRatBN7.246,980,807 - 7,088,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl46,983,970 - 7,089,918 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx411,994,925 - 12,095,393 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.047,809,141 - 7,909,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,155,356 - 6,255,827 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04592,616 - 700,903 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4594,882 - 695,383 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl4848,551 - 870,720 (+)Ensemblrn6Rnor6.0
Rnor_5.04839,542 - 862,459 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.04586,955 - 693,781 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.442,232,812 - 2,333,323 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera43,192,882 - 3,293,382 (+)NCBICelera
RGSC_v3.142,211,733 - 2,333,323 (-)NCBI
Cytogenetic Map4q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenobarbital  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbm33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr847,714,660 - 7,825,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl47,720,180 - 7,820,882 (-)EnsemblGRCr8
mRatBN7.246,980,807 - 7,088,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl46,983,970 - 7,089,918 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx411,994,925 - 12,095,393 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.047,809,141 - 7,909,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,155,356 - 6,255,827 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04592,616 - 700,903 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4594,882 - 695,383 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl4848,551 - 870,720 (+)Ensemblrn6Rnor6.0
Rnor_5.04839,542 - 862,459 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.04586,955 - 693,781 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.442,232,812 - 2,333,323 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera43,192,882 - 3,293,382 (+)NCBICelera
RGSC_v3.142,211,733 - 2,333,323 (-)NCBI
Cytogenetic Map4q11NCBI
RBM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387155,644,661 - 155,781,480 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7155,644,451 - 155,781,485 (+)Ensemblhg38GRCh38
GRCh377155,437,355 - 155,574,174 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367155,129,964 - 155,266,940 (+)NCBIBuild 36Build 36hg18NCBI36
Celera7149,860,791 - 149,997,767 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7149,167,185 - 149,304,126 (+)NCBIHuRef
CHM1_17155,445,551 - 155,582,574 (+)NCBICHM1_1
T2T-CHM13v2.07156,825,729 - 156,962,514 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27154,668,779 - 154,805,751 (+)NCBI
Rbm33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39528,521,817 - 28,624,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl528,522,119 - 28,624,237 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38528,316,836 - 28,419,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl528,317,121 - 28,419,239 (+)Ensemblmm10GRCm38
MGSCv37528,643,729 - 28,745,782 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36528,647,964 - 28,750,033 (+)NCBIMGSCv36mm8
Celera525,865,900 - 25,968,317 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.36NCBI
Rbm33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,197 (+)Ensembl
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBIChiLan1.0ChiLan1.0
RBM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26192,070,461 - 192,207,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07147,244,030 - 147,380,702 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,958,088 - 159,095,567 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,958,099 - 159,089,137 (+)EnsemblpanPan2panpan1.1
RBM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11618,489,646 - 18,634,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1618,489,214 - 18,629,302 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1619,122,926 - 19,263,960 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01620,219,274 - 20,360,396 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1620,218,481 - 20,360,396 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11618,589,677 - 18,730,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01619,169,753 - 19,310,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01619,223,245 - 19,364,329 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbm33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051182,886,375 - 2,976,095 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365279,936,317 - 10,011,104 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365279,936,094 - 10,017,054 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1182,564,990 - 2,676,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,683,355 - 2,795,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121123,776,993 - 123,906,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21123,776,858 - 123,904,093 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607219,980,169 - 20,114,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,234,265 - 2,340,693 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248002,228,579 - 2,340,903 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbm33
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16157,114,615 - 157,221,860 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbm33
820 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000033377
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat

Markers in Region
RH133145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.246,984,093 - 6,984,285 (-)MAPPERmRatBN7.2
Rnor_6.04697,425 - 697,616NCBIRnor6.0
Rnor_5.04690,307 - 690,498UniSTSRnor5.0
RGSC_v3.442,230,579 - 2,230,770UniSTSRGSC3.4
Celera43,295,424 - 3,295,615UniSTS
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000033377   ⟹   ENSRNOP00000030808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl47,720,180 - 7,820,882 (-)Ensembl
mRatBN7.2 Ensembl46,986,327 - 7,089,918 (-)Ensembl
Rnor_6.0 Ensembl4594,882 - 695,383 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4848,551 - 870,720 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096366   ⟹   ENSRNOP00000094894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl47,720,180 - 7,820,882 (-)Ensembl
mRatBN7.2 Ensembl46,986,327 - 7,089,918 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101332   ⟹   ENSRNOP00000079946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl46,983,970 - 6,991,853 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165709   ⟹   ENSRNOP00000106204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl47,720,180 - 7,820,882 (-)Ensembl
RefSeq Acc Id: NM_001191859   ⟹   NP_001178788
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,720,180 - 7,820,683 (-)NCBI
mRatBN7.246,986,327 - 7,086,839 (-)NCBI
Rnor_6.04594,882 - 695,383 (+)NCBI
Rnor_5.04586,955 - 693,781 (+)NCBI
Celera43,192,882 - 3,293,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235845   ⟹   XP_006235907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,312 (-)NCBI
Rnor_6.04592,616 - 700,903 (+)NCBI
Rnor_5.04586,955 - 693,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592677   ⟹   XP_017448166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,317 (-)NCBI
Rnor_6.04596,796 - 700,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592678   ⟹   XP_017448167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,321 (-)NCBI
Rnor_6.04596,796 - 700,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592680   ⟹   XP_017448169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,334 (-)NCBI
Rnor_6.04596,796 - 700,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592681   ⟹   XP_017448170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,327 (-)NCBI
Rnor_6.04596,796 - 700,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107741   ⟹   XP_038963669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
mRatBN7.246,980,807 - 7,088,322 (-)NCBI
RefSeq Acc Id: XM_063286223   ⟹   XP_063142293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr847,714,660 - 7,825,469 (-)NCBI
RefSeq Acc Id: NP_001178788   ⟸   NM_001191859
- UniProtKB: D3ZTA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235907   ⟸   XM_006235845
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AN05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448166   ⟸   XM_017592677
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448167   ⟸   XM_017592678
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017448169   ⟸   XM_017592680
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017448170   ⟸   XM_017592681
- Peptide Label: isoform X7
- Sequence:
Ensembl Acc Id: ENSRNOP00000030808   ⟸   ENSRNOT00000033377
RefSeq Acc Id: XP_038963669   ⟸   XM_039107741
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000094894   ⟸   ENSRNOT00000096366
Ensembl Acc Id: ENSRNOP00000079946   ⟸   ENSRNOT00000101332
RefSeq Acc Id: XP_063142293   ⟸   XM_063286223
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000106204   ⟸   ENSRNOT00000165709
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTA8-F1-model_v2 AlphaFold D3ZTA8 1-1223 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310651 AgrOrtholog
BioCyc Gene G2FUF-46139 BioCyc
Ensembl Genes ENSRNOG00000006718 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000051731 Ensembl
Ensembl Transcript ENSRNOT00000033377 ENTREZGENE
  ENSRNOT00000033377.6 UniProtKB/TrEMBL
  ENSRNOT00000096366 ENTREZGENE
  ENSRNOT00000096366.2 UniProtKB/TrEMBL
  ENSRNOT00000165709.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM33 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report rno:362297 UniProtKB/TrEMBL
NCBI Gene 362297 ENTREZGENE
PANTHER PTHR22014 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 33 UniProtKB/TrEMBL
PhenoGen Rbm33 PhenoGen
RatGTEx ENSRNOG00000006718 RatGTEx
  ENSRNOG00000051731 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I6AN05 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LWA2_RAT UniProtKB/TrEMBL
  D3ZTA8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rbm33  RNA binding motif protein 33  LOC108348119  RNA-binding protein 33-like  Data merged from RGD:11363214 737654 PROVISIONAL
2016-08-02 LOC108348119  RNA-binding protein 33-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-23 Rbm33  RNA binding motif protein 33  RGD1310651  similar to hypothetical protein MGC20460  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310651  similar to hypothetical protein MGC20460   RGD1310651_predicted  similar to hypothetical protein MGC20460 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310651_predicted  similar to hypothetical protein MGC20460 (predicted)  LOC362297_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362297_predicted  similar to hypothetical protein MGC20460 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL