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Gene: Gatad2a (GATA zinc finger domain containing 2A) Rattus norvegicus

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Symbol:

Gatad2a

Name:

GATA zinc finger domain containing 2A

RGD ID:

1310596

Description:

Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including blood vessel development; chordate embryonic development; and embryonic body morphogenesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Orthologous to human GATAD2A (GATA zinc finger domain containing 2A); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC290669; MGC109147; p66 alpha; RGD1310596; similar to p66 alpha homolog; transcriptional repressor p66-alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GATAD2A (GATA zinc finger domain containing 2A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Gatad2a (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gatad2a (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GATAD2A (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GATAD2A (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gatad2a (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GATAD2A (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GATAD2A (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gatad2a (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gatad2a (GATA zinc finger domain containing 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gatad2a (GATA zinc finger domain containing 2A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GATAD2A (GATA zinc finger domain containing 2A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gatad2ab (GATA zinc finger domain containing 2Ab)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dcp-66	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	dcp-66	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	simj	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	simj	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gatad2a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gatad2a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,463,500 - 19,553,497 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	19,463,500 - 19,553,497 (+)	Ensembl				GRCr8
mRatBN7.2	16	19,429,578 - 19,520,320 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,429,578 - 19,519,587 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	19,469,767 - 19,560,312 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,601,537 - 20,698,495 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,522,741 - 19,613,295 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	21,177,793 - 21,267,768 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,178,138 - 21,268,504 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	21,093,916 - 21,184,843 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	19,913,558 - 20,004,379 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	19,618,575 - 19,708,686 (+)	NCBI		Celera
RGSC_v3.1	16	19,994,115 - 20,003,487 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Genetic Predisposition to Disease (ISO)

Neurodevelopmental Disorders (ISO)

Stomach Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloroethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

ivermectin (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulindac (EXP)

sunitinib (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior neuropore closure (ISO)

blood vessel development (ISO)

chromatin remodeling (IBA,ISO)

embryonic body morphogenesis (ISO)

in utero embryonic development (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (IBA,IEA)

neural fold formation (ISO)

programmed cell death (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (IEA,ISO)

NuRD complex (IBA,ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

CHD family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The nucleosome remodeling and deacetylase complex in development and disease.	Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12183469	PMID:17565372

Genomics

Comparative Map Data

Gatad2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,463,500 - 19,553,497 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	19,463,500 - 19,553,497 (+)	Ensembl				GRCr8
mRatBN7.2	16	19,429,578 - 19,520,320 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,429,578 - 19,519,587 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	19,469,767 - 19,560,312 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,601,537 - 20,698,495 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,522,741 - 19,613,295 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	21,177,793 - 21,267,768 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,178,138 - 21,268,504 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	21,093,916 - 21,184,843 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	19,913,558 - 20,004,379 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	19,618,575 - 19,708,686 (+)	NCBI		Celera
RGSC_v3.1	16	19,994,115 - 20,003,487 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

GATAD2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,385,843 - 19,508,932 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,385,638 - 19,508,932 (+)	Ensembl			hg38	GRCh38
GRCh37	19	19,496,652 - 19,619,741 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,430,401 - 19,478,789 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	19,400,702 - 19,523,801 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	19,058,971 - 19,181,846 (+)	NCBI		HuRef
CHM1_1	19	19,497,349 - 19,620,430 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,523,327 - 19,646,416 (+)	NCBI		T2T-CHM13v2.0

Gatad2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,359,719 - 70,450,093 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,359,726 - 70,449,034 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	69,907,069 - 69,996,402 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	69,907,076 - 69,996,384 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	72,430,968 - 72,520,278 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	72,837,459 - 72,925,353 (-)	NCBI		MGSCv36	mm8
Celera	8	72,466,875 - 72,555,282 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.06	NCBI

Gatad2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,439,594 - 2,506,538 (-)	Ensembl
ChiLan1.0	NW_004955524	2,439,594 - 2,506,539 (-)	NCBI	ChiLan1.0	ChiLan1.0

GATAD2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	24,246,369 - 24,371,310 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	23,254,888 - 23,377,728 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,824,615 - 18,947,351 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,824,575 - 19,942,670 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,873,119 - 19,942,670 (+)	Ensembl			panPan2	panpan1.1

GATAD2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	43,736,471 - 43,853,505 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	43,739,849 - 43,846,370 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,654,024 - 43,770,694 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,224,437 - 44,341,415 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,226,432 - 44,334,257 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,462,030 - 43,578,906 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	43,871,448 - 43,988,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,147,086 - 44,263,794 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gatad2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,409,830 - 202,525,336 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	1,958,844 - 2,074,707 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	1,958,961 - 2,074,471 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GATAD2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,415,750 - 58,517,162 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	58,415,749 - 58,517,308 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,210,083 - 58,282,240 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GATAD2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,847,310 - 17,971,219 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,847,307 - 17,971,220 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	1,332,270 - 1,458,474 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gatad2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,230,581 - 2,308,579 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624908	2,213,661 - 2,305,877 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gatad2a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	12,175,479 - 12,264,776 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gatad2a
355 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	403
Count of miRNA genes:	213
Interacting mature miRNAs:	248
Transcripts:	ENSRNOT00000027943
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33425095	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15748006	25801629	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	4744222	49744222	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	1	26734272	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26734272	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	4354822	49354822	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4234212	49757901	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	16278184	27244292	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3386790	49757901	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3386790	26128267	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26734272	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	3301683	48301683	Rat

Markers in Region

RH126832

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	19,518,382 - 19,518,621 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	21,266,564 - 21,266,802	NCBI	Rnor6.0
Rnor_5.0	16	21,182,906 - 21,183,144	UniSTS	Rnor5.0
RGSC_v3.4	16	20,003,175 - 20,003,413	UniSTS	RGSC3.4
Celera	16	19,707,482 - 19,707,720	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027943 ⟹ ENSRNOP00000027943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	19,463,500 - 19,553,497 (+)	Ensembl
mRatBN7.2 Ensembl	16	19,429,578 - 19,519,587 (+)	Ensembl
Rnor_6.0 Ensembl	16	21,178,138 - 21,268,504 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162058 ⟹ ENSRNOP00000101199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	19,500,556 - 19,552,607 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168140 ⟹ ENSRNOP00000102915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	19,463,595 - 19,552,606 (+)	Ensembl

RefSeq Acc Id:

NM_001013881 ⟹ NP_001013903

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,500 - 19,553,497 (+)	NCBI
mRatBN7.2	16	19,429,578 - 19,519,587 (+)	NCBI
Rnor_6.0	16	21,177,793 - 21,267,768 (+)	NCBI
Rnor_5.0	16	21,093,916 - 21,184,843 (+)	NCBI
RGSC_v3.4	16	19,913,558 - 20,004,379 (+)	RGD
Celera	16	19,618,575 - 19,708,686 (+)	RGD

Sequence:

show sequence

CCCCAGTGGGGTGCGGATCTTGAGCGCCCCGGCCAGACTTCATTGGCTTGCGCCGCCGCCACTC
GGAGAGACGTGCCTCAACCCGGAAGTGTGAGAGGCAAAATCTGCCTAGCAACCGGGGAAGCCGG
GCTGTGAAGCGGGCAATTTCAGTGTGAGAAGGAGCGGTGAGACCGAGCGGCGGCTCCGAGCGCG
CCGCGGCAGCTCCTTCCGCCCGGGGTCAGCGCCCCGGCGCGCGCACGCGCACCCTCGCTGCCTG
AGCGCGCCCCGCGCCGCCCGCGCAGTCGGTCCGTCGGTCGTCCGTCGTCCTGTCGCCGCCGCCG
CCTCAGGCGCCACCCGCGGGAGCCGTCGCCGTGGGACGAGACCGGACCGGACCCGAGCGCTCTG
CCTGAGGCTGGCCCGGGGCCCAGCTGCGGATCGCGCGGAGCTGAGCAACTTCGGTTGGCCAGCA
CATTGAGCCAGCACATCCACATAAGTTGCCTTTTGACAGAGCTGTGGCCATGACGGCATGGTAG
GACCAGCGTCACGGACCCTGAGGCCAGAATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAG
CGAGCCTTTGAACCTGACCTAACGGAGGATGATGTGGAGAGCAAGAAAATGAAAATGGAGAGAG
GACCATCAGAACTGCCGGTGGATGGAGACAGCAGGGTGATGCCAGAGCCCAGTGCAGGCCCAGC
CCAGGGGTTGCTGAGGACAACAGAGGCCATGGGCACAGGATCTGGCGAAGGGCTGTTAGGAGAC
GGGCCTGTGGACATGCGTACCTCACACAGTGACATGAAGTCTGAGAAGAGACCTCCCTCGCCTG
ATGTGATTGTGCTCTCTGACAGCGAGCAGCCATCAAGCCCGAGGGTGAATGGCCTGACCACAGT
GGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAGCGAGAACGGATG
ATCAAGCAGCTGAAGGAGGAATTGAGGCTAGAGGAAGCAAAGCTGGTCTTGTTGAAGAAGCTGC
GACAGAGTCAAATACAGAAGGAAGCCACTGCCCAGAAGCCTACAGCTTCCTCAGGGAGCACTGT
GACCACCCCTCCCCCACTCGTGCGGGGTCCCCAGAACATTCCTGCTGGCAAGCCATCACTCCAG
ACCTCCTCCACTCGGATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGG
TGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCACTTGTCAGGGGAGC
CCAGCAGATTCACAACATCAGACAGCATTCCTCCACGGGGCCACCACCCCTCCTCCTGGCCCCC
CGTGCCTCAGTGCCCAGCATGCAGATTCAGGGACAGAGGATCATCCAGCAGGGACTCATCCGGG
TCGCCAATGTCCCCAACACCAGTCTGCTCGTCAATATCCCTCAGCCTACGGCAGCCTCACTGAA
GGGGACAACAGTTGGCTCTGCTCAGGCAAACTCCACTCCCAGCAGTGTGGCTTCTGTGGTTGCC
TCTGCTGAGTCCCCAGCTAGCCGGCAGGCTGCTGCCAAGCTAGCGCTGCGCAAGCAGTTGGAGA
AGACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCTCCGGAGATGAACTTCTTGCCCAGTGC
TGCCAACAATGAATTCATCTATCTGGTCGGCTTGGAGGAAGTGGTGCAGAACCTGCTGGAGACG
CAAGCGGGCAGGATTTCTGCCACCTCAGCTGCTGCCGTGTTATCCCGGGAGCCTTACATGTGTG
TGCAGTGTAAGACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCTGTCATGTGTGAGAA
CTGCATGACATCCAACCAAAAGAAGGCACTAAAAGTGGAGCACACCAGTCGCCTGAAGGCCGCC
TTCGTGAAGGCGCTACAACAAGAGCAGGAGATGGAGCAGCGACTGCTGCAGCAGGGCGTAGGCA
CCGCCAGCATCAAGGCTGAGACCGCAGCTCCACATCCCTCGCTGAAGCAGGTCATAAAGCCCCG
ACGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGTGACTGGAATAACGGGTCCGTACTACAGACT
TCCAGCCAGCTGTCCCGGGGTTCAGCCACAACACCTCGTGGTGTTCTGCACACTTTCAGCCAGT
CACCCAAACTGCAGAACGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGGCAGACATTCCGA
GAGAGTCGTGGGCACCAGCAAGGGCACCGCCTCCAACTGGAAAAAGACACCTCTGAGCACAGGT
GGGACGCTTGCCTTCGTCAGCCCAAGCTTGGCAGTGCACAAGAGCTCCTCGGCCGTGGACCGAC
AGCGAGAGTACCTCCTGGACATGATTCCTCCACGCTCCATCCCCCAGTCAGCCACATGGAAATA
GTGGGAGCCGGCCCAGCCGAGGACAGGCCCTCTGCTCTCCCGAGGCCCTTGGTCTAGGACACGC
AGACTACCCTCCTAGCAAGTTGCCTGAGACAGCTCAGGCCTTGGCTCTTGCCTTGCTGTGGCCA
GGAGAGTACCACCATGGTGCCCAGGATCAGAACCAGGGACCTTCCCTATGGGCCTTCTCCTTCC
TTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
AGCGTGGGTGGGAGCTCACCCTGGACACTGTGACACACCCGGGCCAGACTGGCACCGGGGGCTC
CCGAAGTTGAGCCGGGATTTCGTTTTCTTTTGGCTTTTCCCATCTTAGCTCCCCAGTCTCTGCC
TCTTCATGGCCATCTATAGGTTGAAGTTTGGGTTTTATTGGGTTTTTTGTTTTTGTTTTTTTTA
TAATCACCTCATAATGATGATGGAATTAAAGTGAACTGCATAGACCCAGGGTCATGGTTGTGCA
CAGTGCAGTCTGGCAGGCTCTACCCCAGAGGATGCTCAGAGTGGCAGCAGCAGAGATGGCAGGT
GCCACCCTGGCTCTGGTCGTGTTTGTTGCTGCTCACTGCAGTCCCTGGCTTCCACACTTAGCAG
AATGAACCGCAGCCCAGATCTGTCTGACATCCAGAGGCTCCAGAGGGATGCTGGGGTCCGCCAT
GCTGGAGTCAGAGCTGACTGCTGGCTGGGAGGCTGCTGGGTTACTTTTCGTGGTTTATTTTATT
AAAAATTTCTATCCTTTTTCTCTTCATTTTGATGGACACAATCTCAAGATGCCCATGCCTGCCA
AGAGGCATCCAAGTAGGGCCCAGCCAGAACCCTTAGGTCTGGAGTCAGCAGGGCTTACTCCCTC
TTAGCCACAGGGATGTCTGAAAGGGCTGAGTCTACTTTTGTTCTGTTTTGTTTCCTTCTCCCTC
CACTCTTAACAATGGGTTCCATGGTGAAAGGCAGAAGCAGCTCTGTGTCCAGCACGCACGGTGC
GGCCTTCTGCTCATGTGATTGGTCGCCGTCGTTTCCCCATCCAGCCCTGGTTTCCCTTGACACA
ATACAGTTAGGGACTTTAATTTAAACCCTTGTTCTGCAGACCATCGCCCTCTGCAGACATGCCC
CTGCCTCCTCCTAATAAAGGCTCATTTAACTCCGTGATCACTTGTGTGGAAATCCTCCATCTTT
AGAAATCATTTGGACATGTGGGCGTTCTGAGTTTTTGGAAGACCCTTTTGTTGTGTGATACCCA
AGTTGCTCAGTACTTTTGAAGTGTGTCACTTCCCAGGGTGGATTTGGGGGAATTAACAGAAGTT
GACTTTTTAAGGGGGGTTGTTTTTACACCAAAAAAAAAAAAAAATGAAAATATATGCAAGCATT
TCTTCAGTCCTTGAGTATTTTTGTGCCTGGCAAGTTAGTTCCTGTTATCTACACTTCCTGAGTG
GCTGAGCCTCTGGTCAGCAATTTAGGCTAAAGCCTTCTGGCTCTGTGGAACAGCAACACTGGGT
GGCTTCCCTCAGCCAGAAGTCCTCACTCCTGTGCAGTCACTGATGAGACCAAGTCACCTAGAAC
TGGATGCAGACCTCCCCTTGAGTTGATGGTCTGAGAGCTCTATTGTCCTGGTGCATTTGTGACC
TCCCTACCCCTCAGTTTCCCAAGTCTAATGACTTCTCCCCATCACGACATCCACCTGTCATCTA
ACATTCCGTGGGTCAAGTTTGTGCACCTCACAAAGGACAGACCTCTGGCTGTGGGTCACACTAA
ACAGGATAACAGGCTGTGGTGAAGGTCTCTGAGGAGGGCTGGAGTGAGGTGCCTTAGCTTACTT
GAAAGTGCTGCCCATTCCTCTGTGCCACACTGGCCTAAGCAGCAAGCCCTCAAGATGATCAGTC
TGGGGACTGGGCCGGGAGGACCAGGTATTTAGGGTAGAAAGCTGCCACCCCCACTGAAACTGGC
TGTAGTCCCTACCCTGAGTGGTCTGTGTCCTGGGCTTCTTGAAACTCCCTAGAGGTAGACTGGC
CTCTGCTTCCTGAGTGCTGGGATTAATGGC

hide sequence

RefSeq Acc Id:

XM_006252887 ⟹ XP_006252949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,484,086 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,450,175 - 19,520,320 (+)	NCBI
Rnor_6.0	16	21,198,478 - 21,267,076 (+)	NCBI
Rnor_5.0	16	21,093,916 - 21,184,843 (+)	NCBI

Sequence:

show sequence

GGCCCGGTCGGCGCGCGGCCGGAATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGAGC
CTTTGAACCTGACCTAACGGAGGATGATGTGGAGAGCAAGAAAATGAAAATGGAGAGAGGACCA
TCAGAACTGCCGGTGGATGGAGACAGCAGGGTGATGCCAGAGCCCAGTGCAGGCCCAGCCCAGG
GGTTGCTGAGGACAACAGAGGCCATGGGCACAGGATCTGGCGAAGGGCTGTTAGGAGACGGGCC
TGTGGACATGCGTACCTCACACAGTGACATGAAGTCTGAGAAGAGACCTCCCTCGCCTGATGTG
ATTGTGCTCTCTGACAGCGAGCAGCCATCAAGCCCGAGGGTGAATGGCCTGACCACAGTGGCCT
TGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAGCGAGAACGGATGATCAA
GCAGCTGAAGGAGGAATTGAGGCTAGAGGAAGCAAAGCTGGTCTTGTTGAAGAAGCTGCGACAG
AGTCAAATACAGAAGGAAGCCACTGCCCAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACCA
CCCCTCCCCCACTCGTGCGGGGTCCCCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTC
CTCCACTCGGATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCT
GCCAAACTGGGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCACTTGTCAGGGGAGCCCAGG
TGAGTCAGCAGATTCACAACATCAGACAGCATTCCTCCACGGGGCCACCACCCCTCCTCCTGGC
CCCCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGACAGAGGATCATCCAGCAGGGACTCATC
CGGGTCGCCAATGTCCCCAACACCAGTCTGCTCGTCAATATCCCTCAGCCTACGGCAGCCTCAC
TGAAGGGGACAACAGTTGGCTCTGCTCAGGCAAACTCCACTCCCAGCAGTGTGGCTTCTGTGGT
TGCCTCTGCTGAGTCCCCAGCTAGCCGGCAGGCTGCTGCCAAGCTAGCGCTGCGCAAGCAGTTG
GAGAAGACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCTCCGGAGATGAACTTCTTGCCCA
GTGCTGCCAACAATGAATTCATCTATCTGGTCGGCTTGGAGGAAGTGGTGCAGAACCTGCTGGA
GACGCAAGCGGGCAGGATTTCTGCCACCTCAGCTGCTGCCGTGTTATCCCGGGAGCCTTACATG
TGTGTGCAGTGTAAGACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCTGTCATGTGTG
AGAACTGCATGACATCCAACCAAAAGAAGGCACTAAAAGTGGAGCACACCAGTCGCCTGAAGGC
CGCCTTCGTGAAGGCGCTACAACAAGAGCAGGAGATGGAGCAGCGACTGCTGCAGCAGGGCGTA
GGCACCGCCAGCATCAAGGCTGAGACCGCAGCTCCACATCCCTCGCTGAAGCAGGTCATAAAGC
CCCGACGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGTGACTGGAATAACGGGTCCGTACTACA
GACTTCCAGCCAGCTGTCCCGGGGTTCAGCCACAACACCTCGTGGTGTTCTGCACACTTTCAGC
CAGTCACCCAAACTGCAGAACGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGGCAGACATT
CCGAGAGAGTCGTGGGCACCAGCAAGGGCACCGCCTCCAACTGGAAAAAGACACCTCTGAGCAC
AGGTGGGACGCTTGCCTTCGTCAGCCCAAGCTTGGCAGTGCACAAGAGCTCCTCGGCCGTGGAC
CGACAGCGAGAGTACCTCCTGGACATGATTCCTCCACGCTCCATCCCCCAGTCAGCCACATGGA
AATAGTGGGAGCCGGCCCAGCCGAGGACAGGCCCTCTGCTCTCCCGAGGCCCTTGGTCTAGGAC
ACGCAGACTACCCTCCTAGCAAGTTGCCTGAGACAGCTCAGGCCTTGGCTCTTGCCTTGCTGTG
GCCAGGAGAGTACCACCATGGTGCCCAGGATCAGAACCAGGGACCTTCCCTATGGGCCTTCTCC
TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCT
GGCCAGCGTGGGTGGGAGCTCACCCTGGACACTGTGACACACCCGGGCCAGACTGGCACCGGGG
GCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTTTGGCTTTTCCCATCTTAGCTCCCCAGTCTC
TGCCTCTTCATGGCCATCTATAGGTTGAAGTTTGGGTTTTATTGGGTTTTTTGTTTTTGTTTTT
TTTATAATCACCTCATAATGATGATGGAATTAAAGTGAACTGCATAGACCCAGGGTCATGGTTG
TGCACAGTGCAGTCTGGCAGGCTCTACCCCAGAGGATGCTCAGAGTGGCAGCAGCAGAGATGGC
AGGTGCCACCCTGGCTCTGGTCGTGTTTGTTGCTGCTCACTGCAGTCCCTGGCTTCCACACTTA
GCAGAATGAACCGCAGCCCAGATCTGTCTGACATCCAGAGGCTCCAGAGGGATGCTGGGGTCCG
CCATGCTGGAGTCAGAGCTGACTGCTGGCTGGGAGGCTGCTGGGTTACTTTTCGTGGTTTATTT
TATTAAAAATTTCTATCCTTTTTCTCTTCATTTTGATGGACACAATCTCAAGATGCCCATGCCT
GCCAAGAGGCATCCAAGTAGGGCCCAGCCAGAACCCTTAGGTCTGGAGTCAGCAGGGCTTACTC
CCTCTTAGCCACAGGGATGTCTGAAAGGGCTGAGTCTACTTTTGTTCTGTTTTGTTTCCTTCTC
CCTCCACTCTTAACAATGGGTTCCATGGTGAAAGGCAGAAGCAGCTCTGTGTCCAGCACGCACG
GTGCGGCCTTCTGCTCATGTGATTGGTCGCCGTCGTTTCCCCATCCAGCCCTGGTTTCCCTTGA
CACAATACAGTTAGGGACTTTAATTTAAACCCTTGTTCTGCAGACCATCGCCCTCTGCAGACAT
GCCCCTGCCTCCTCCTAATAAAGGCTCATTTAACTCCGTGATCACTTGTGTGGAAATCCTCCAT
CTTTAGAAATCATTTGGACATGTGGGCGTTCTGAGTTTTTGGAAGACCCTTTTGTTGTGTGATA
CCCAAGTTGCTCAGTACTTTTGAAGTGTGTCACTTCCCAGGGTGGATTTGGGGGAATTAACAGA
AGTTGACTTTTTAAGGGGGGTTGTTTTTACACCAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600034 ⟹ XP_017455523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,484,080 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,450,169 - 19,520,320 (+)	NCBI
Rnor_6.0	16	21,198,467 - 21,267,076 (+)	NCBI

Sequence:

show sequence

CGCTACCCCTGGGCCCGGTCGGCGCGCGGCCGGGTTGGCCAGCACATTGAGCCAGCACATCCAC
ATAAGTTGCCTTTTGACAGAGCTGTGGCCATGACGGCATGGTAGGACCAGCGTCACGGACCCTG
AGGCCAGAATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGAGCCTTTGAACCTGACCT
AACGGAGGATGATGTGGAGAGCAAGAAAATGAAAATGGAGAGAGGACCATCAGAACTGCCGGTG
GATGGAGACAGCAGGGTGATGCCAGAGCCCAGTGCAGGCCCAGCCCAGGGGTTGCTGAGGACAA
CAGAGGCCATGGGCACAGGATCTGGCGAAGGGCTGTTAGGAGACGGGCCTGTGGACATGCGTAC
CTCACACAGTGACATGAAGTCTGAGAAGAGACCTCCCTCGCCTGATGTGATTGTGCTCTCTGAC
AGCGAGCAGCCATCAAGCCCGAGGGTGAATGGCCTGACCACAGTGGCCTTGAAAGACACCAGCA
CTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAGCGAGAACGGATGATCAAGCAGCTGAAGGAGGA
ATTGAGGCTAGAGGAAGCAAAGCTGGTCTTGTTGAAGAAGCTGCGACAGAGTCAAATACAGAAG
GAAGCCACTGCCCAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACCACCCCTCCCCCACTCG
TGCGGGGTCCCCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTCCTCCACTCGGATACC
CGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCA
CAGGCCAGCTCTCAAGTAGTCATGCCACCACTTGTCAGGGGAGCCCAGGTGAGTCAGCAGATTC
ACAACATCAGACAGCATTCCTCCACGGGGCCACCACCCCTCCTCCTGGCCCCCCGTGCCTCAGT
GCCCAGCATGCAGATTCAGGGACAGAGGATCATCCAGCAGGGACTCATCCGGGTCGCCAATGTC
CCCAACACCAGTCTGCTCGTCAATATCCCTCAGCCTACGGCAGCCTCACTGAAGGGGACAACAG
TTGGCTCTGCTCAGGCAAACTCCACTCCCAGCAGTGTGGCTTCTGTGGTTGCCTCTGCTGAGTC
CCCAGCTAGCCGGCAGGCTGCTGCCAAGCTAGCGCTGCGCAAGCAGTTGGAGAAGACACTGCTG
GAGATCCCCCCACCCAAGCCCCCTGCTCCGGAGATGAACTTCTTGCCCAGTGCTGCCAACAATG
AATTCATCTATCTGGTCGGCTTGGAGGAAGTGGTGCAGAACCTGCTGGAGACGCAAGCGGGCAG
GATTTCTGCCACCTCAGCTGCTGCCGTGTTATCCCGGGAGCCTTACATGTGTGTGCAGTGTAAG
ACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCTGTCATGTGTGAGAACTGCATGACAT
CCAACCAAAAGAAGGCACTAAAAGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTCGTGAAGGC
GCTACAACAAGAGCAGGAGATGGAGCAGCGACTGCTGCAGCAGGGCGTAGGCACCGCCAGCATC
AAGGCTGAGACCGCAGCTCCACATCCCTCGCTGAAGCAGGTCATAAAGCCCCGACGTAAGTTGG
CGTTCCGCTCAGGAGAGGCCCGTGACTGGAATAACGGGTCCGTACTACAGACTTCCAGCCAGCT
GTCCCGGGGTTCAGCCACAACACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTG
CAGAACGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAGTCGTGG
GCACCAGCAAGGGCACCGCCTCCAACTGGAAAAAGACACCTCTGAGCACAGGTGGGACGCTTGC
CTTCGTCAGCCCAAGCTTGGCAGTGCACAAGAGCTCCTCGGCCGTGGACCGACAGCGAGAGTAC
CTCCTGGACATGATTCCTCCACGCTCCATCCCCCAGTCAGCCACATGGAAATAGTGGGAGCCGG
CCCAGCCGAGGACAGGCCCTCTGCTCTCCCGAGGCCCTTGGTCTAGGACACGCAGACTACCCTC
CTAGCAAGTTGCCTGAGACAGCTCAGGCCTTGGCTCTTGCCTTGCTGTGGCCAGGAGAGTACCA
CCATGGTGCCCAGGATCAGAACCAGGGACCTTCCCTATGGGCCTTCTCCTTCCTTTTTGCCTTT
AGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGG
GAGCTCACCCTGGACACTGTGACACACCCGGGCCAGACTGGCACCGGGGGCTCCCGAAGTTGAG
CCGGGATTTCGTTTTCTTTTGGCTTTTCCCATCTTAGCTCCCCAGTCTCTGCCTCTTCATGGCC
ATCTATAGGTTGAAGTTTGGGTTTTATTGGGTTTTTTGTTTTTGTTTTTTTTATAATCACCTCA
TAATGATGATGGAATTAAAGTGAACTGCATAGACCCAGGGTCATGGTTGTGCACAGTGCAGTCT
GGCAGGCTCTACCCCAGAGGATGCTCAGAGTGGCAGCAGCAGAGATGGCAGGTGCCACCCTGGC
TCTGGTCGTGTTTGTTGCTGCTCACTGCAGTCCCTGGCTTCCACACTTAGCAGAATGAACCGCA
GCCCAGATCTGTCTGACATCCAGAGGCTCCAGAGGGATGCTGGGGTCCGCCATGCTGGAGTCAG
AGCTGACTGCTGGCTGGGAGGCTGCTGGGTTACTTTTCGTGGTTTATTTTATTAAAAATTTCTA
TCCTTTTTCTCTTCATTTTGATGGACACAATCTCAAGATGCCCATGCCTGCCAAGAGGCATCCA
AGTAGGGCCCAGCCAGAACCCTTAGGTCTGGAGTCAGCAGGGCTTACTCCCTCTTAGCCACAGG
GATGTCTGAAAGGGCTGAGTCTACTTTTGTTCTGTTTTGTTTCCTTCTCCCTCCACTCTTAACA
ATGGGTTCCATGGTGAAAGGCAGAAGCAGCTCTGTGTCCAGCACGCACGGTGCGGCCTTCTGCT
CATGTGATTGGTCGCCGTCGTTTCCCCATCCAGCCCTGGTTTCCCTTGACACAATACAGTTAGG
GACTTTAATTTAAACCCTTGTTCTGCAGACCATCGCCCTCTGCAGACATGCCCCTGCCTCCTCC
TAATAAAGGCTCATTTAACTCCGTGATCACTTGTGTGGAAATCCTCCATCTTTAGAAATCATTT
GGACATGTGGGCGTTCTGAGTTTTTGGAAGACCCTTTTGTTGTGTGATACCCAAGTTGCTCAGT
ACTTTTGAAGTGTGTCACTTCCCAGGGTGGATTTGGGGGAATTAACAGAAGTTGACTTTTTAAG
GGGGGTTGTTTTTACACCAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600035 ⟹ XP_017455524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,545 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,429,617 - 19,520,320 (+)	NCBI
Rnor_6.0	16	21,177,838 - 21,267,076 (+)	NCBI

Sequence:

show sequence

GCTTGCGCCGCCGCCACTCGGAGAGACGTGCCTCAACCCGGAAGTGTGAGAGGCAAAATCTGCC
TAGCAACCGGGGAAGCCGGGCTGTGAAGCGGGCAATTTCAGTGTGAGAAGGAGCGGTGAGACCG
AGCGGCGGCTCCGAGCGCGCCGCGGCAGCTCCTTCCGCCCGGGGTCAGCGCCCCGGCGCGCGCA
CGCGCACCCTCGCTGCCTGAGCGCGCCCCGCGCCGCCCGCGCAGTCGGTCCGTCGGTCGTCCGT
CGTCCTGTCGCCGCCGCCGCCTCAGGCGCCACCCGCGGGAGCCGTCGCCGTGGGACGAGACCGG
ACCGGACCCGAGCGCTCTGCCTGAGGCTGGCCCGGGGCCCAGCTGCGGATCGCGCGGAGCTGAG
CAACTTCGAATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGAGCCTTTGAACCTGACC
TAACGGAGGATGATGTGGAGAGCAAGAAAATGAAAATGGAGAGAGGACCATCAGAACTGCCGGT
GGATGGAGACAGCAGGGTGATGCCAGAGCCCAGTGCAGGCCCAGCCCAGGGGTTGCTGAGGACA
ACAGAGGCCATGGGCACAGGATCTGGCGAAGGGCTGTTAGGAGACGGGCCTGTGGACATGCGTA
CCTCACACAGTGACATGAAGTCTGAGAAGAGACCTCCCTCGCCTGATGTGATTGTGCTCTCTGA
CAGCGAGCAGCCATCAAGCCCGAGGGTGAATGGCCTGACCACAGTGGCCTTGAAAGACACCAGC
ACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAGCGAGAACGGATGATCAAGCAGCTGAAGGAGG
AATTGAGGCTAGAGGAAGCAAAGCTGGTCTTGTTGAAGAAGCTGCGACAGAGTCAAATACAGAA
GGAAGCCACTGCCCAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACCACCCCTCCCCCACTC
GTGCGGGGTCCCCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTCCTCCACTCGGATAC
CCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACC
ACAGGCCAGCTCTCAAGTAGTCATGCCACCACTTGTCAGGGGAGCCCAGGTGAGTCAGCAGATT
CACAACATCAGACAGCATTCCTCCACGGGGCCACCACCCCTCCTCCTGGCCCCCCGTGCCTCAG
TGCCCAGCATGCAGATTCAGGGACAGAGGATCATCCAGCAGGGACTCATCCGGGTCGCCAATGT
CCCCAACACCAGTCTGCTCGTCAATATCCCTCAGCCTACGGCAGCCTCACTGAAGGGGACAACA
GTTGGCTCTGCTCAGGCAAACTCCACTCCCAGCAGTGTGGCTTCTGTGGTTGCCTCTGCTGAGT
CCCCAGCTAGCCGGCAGGCTGCTGCCAAGCTAGCGCTGCGCAAGCAGTTGGAGAAGACACTGCT
GGAGATCCCCCCACCCAAGCCCCCTGCTCCGGAGATGAACTTCTTGCCCAGTGCTGCCAACAAT
GAATTCATCTATCTGGTCGGCTTGGAGGAAGTGGTGCAGAACCTGCTGGAGACGCAAGCGGGCA
GGATTTCTGCCACCTCAGCTGCTGCCGTGTTATCCCGGGAGCCTTACATGTGTGTGCAGTGTAA
GACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCTGTCATGTGTGAGAACTGCATGACA
TCCAACCAAAAGAAGGCACTAAAAGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTCGTGAAGG
CGCTACAACAAGAGCAGGAGATGGAGCAGCGACTGCTGCAGCAGGGCGTAGGCACCGCCAGCAT
CAAGGCTGAGACCGCAGCTCCACATCCCTCGCTGAAGCAGGTCATAAAGCCCCGACGTAAGTTG
GCGTTCCGCTCAGGAGAGGCCCGTGACTGGAATAACGGGTCCGTACTACAGACTTCCAGCCAGC
TGTCCCGGGGTTCAGCCACAACACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACT
GCAGAACGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAGTCGTG
GGCACCAGCAAGGGCACCGCCTCCAACTGGAAAAAGACACCTCTGAGCACAGGTGGGACGCTTG
CCTTCGTCAGCCCAAGCTTGGCAGTGCACAAGAGCTCCTCGGCCGTGGACCGACAGCGAGAGTA
CCTCCTGGACATGATTCCTCCACGCTCCATCCCCCAGTCAGCCACATGGAAATAGTGGGAGCCG
GCCCAGCCGAGGACAGGCCCTCTGCTCTCCCGAGGCCCTTGGTCTAGGACACGCAGACTACCCT
CCTAGCAAGTTGCCTGAGACAGCTCAGGCCTTGGCTCTTGCCTTGCTGTGGCCAGGAGAGTACC
ACCATGGTGCCCAGGATCAGAACCAGGGACCTTCCCTATGGGCCTTCTCCTTCCTTTTTGCCTT
TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTG
GGAGCTCACCCTGGACACTGTGACACACCCGGGCCAGACTGGCACCGGGGGCTCCCGAAGTTGA
GCCGGGATTTCGTTTTCTTTTGGCTTTTCCCATCTTAGCTCCCCAGTCTCTGCCTCTTCATGGC
CATCTATAGGTTGAAGTTTGGGTTTTATTGGGTTTTTTGTTTTTGTTTTTTTTATAATCACCTC
ATAATGATGATGGAATTAAAGTGAACTGCATAGACCCAGGGTCATGGTTGTGCACAGTGCAGTC
TGGCAGGCTCTACCCCAGAGGATGCTCAGAGTGGCAGCAGCAGAGATGGCAGGTGCCACCCTGG
CTCTGGTCGTGTTTGTTGCTGCTCACTGCAGTCCCTGGCTTCCACACTTAGCAGAATGAACCGC
AGCCCAGATCTGTCTGACATCCAGAGGCTCCAGAGGGATGCTGGGGTCCGCCATGCTGGAGTCA
GAGCTGACTGCTGGCTGGGAGGCTGCTGGGTTACTTTTCGTGGTTTATTTTATTAAAAATTTCT
ATCCTTTTTCTCTTCATTTTGATGGACACAATCTCAAGATGCCCATGCCTGCCAAGAGGCATCC
AAGTAGGGCCCAGCCAGAACCCTTAGGTCTGGAGTCAGCAGGGCTTACTCCCTCTTAGCCACAG
GGATGTCTGAAAGGGCTGAGTCTACTTTTGTTCTGTTTTGTTTCCTTCTCCCTCCACTCTTAAC
AATGGGTTCCATGGTGAAAGGCAGAAGCAGCTCTGTGTCCAGCACGCACGGTGCGGCCTTCTGC
TCATGTGATTGGTCGCCGTCGTTTCCCCATCCAGCCCTGGTTTCCCTTGACACAATACAGTTAG
GGACTTTAATTTAAACCCTTGTTCTGCAGACCATCGCCCTCTGCAGACATGCCCCTGCCTCCTC
CTAATAAAGGCTCATTTAACTCCGTGATCACTTGTGTGGAAATCCTCCATCTTTAGAAATCATT
TGGACATGTGGGCGTTCTGAGTTTTTGGAAGACCCTTTTGTTGTGTGATACCCAAGTTGCTCAG
TACTTTTGAAGTGTGTCACTTCCCAGGGTGGATTTGGGGGAATTAACAGAAGTTGACTTTTTAA
GGGGGGTTGTTTTTACACCAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039094339 ⟹ XP_038950267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,547 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,429,618 - 19,520,320 (+)	NCBI

RefSeq Acc Id:

XM_039094340 ⟹ XP_038950268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,500,540 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,465,972 - 19,520,320 (+)	NCBI

RefSeq Acc Id:

XM_039094341 ⟹ XP_038950269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,484,080 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,450,169 - 19,520,320 (+)	NCBI

RefSeq Acc Id:

XM_039094342 ⟹ XP_038950270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,484,080 - 19,552,608 (+)	NCBI
mRatBN7.2	16	19,450,169 - 19,517,516 (+)	NCBI

RefSeq Acc Id:

XM_063275190 ⟹ XP_063131260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,523,772 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275192 ⟹ XP_063131262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,464,885 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275193 ⟹ XP_063131263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,502,920 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275194 ⟹ XP_063131264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,546 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275195 ⟹ XP_063131265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,500,540 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275197 ⟹ XP_063131267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,547 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275198 ⟹ XP_063131268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,500,540 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275199 ⟹ XP_063131269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,546 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275200 ⟹ XP_063131270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,549 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275201 ⟹ XP_063131271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,500,541 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275202 ⟹ XP_063131272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,548 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275203 ⟹ XP_063131273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,527 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275204 ⟹ XP_063131274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,545 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275205 ⟹ XP_063131275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,546 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275207 ⟹ XP_063131277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,463,548 - 19,552,608 (+)	NCBI

RefSeq Acc Id:

XM_063275208 ⟹ XP_063131278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,523,772 - 19,552,608 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013903	(Get FASTA)	NCBI Sequence Viewer
	NP_001423704	(Get FASTA)	NCBI Sequence Viewer
	NP_001423705	(Get FASTA)	NCBI Sequence Viewer
	NP_001423706	(Get FASTA)	NCBI Sequence Viewer
	NP_001423707	(Get FASTA)	NCBI Sequence Viewer
	NP_001423708	(Get FASTA)	NCBI Sequence Viewer
	NP_001423709	(Get FASTA)	NCBI Sequence Viewer
	NP_001423710	(Get FASTA)	NCBI Sequence Viewer
	NP_001423711	(Get FASTA)	NCBI Sequence Viewer
	NP_001423712	(Get FASTA)	NCBI Sequence Viewer
	NP_001423713	(Get FASTA)	NCBI Sequence Viewer
	NP_001423714	(Get FASTA)	NCBI Sequence Viewer
	NP_001423715	(Get FASTA)	NCBI Sequence Viewer
	NP_001423716	(Get FASTA)	NCBI Sequence Viewer
	NP_001423717	(Get FASTA)	NCBI Sequence Viewer
	NP_001423718	(Get FASTA)	NCBI Sequence Viewer
	NP_001423719	(Get FASTA)	NCBI Sequence Viewer
	XP_006252949	(Get FASTA)	NCBI Sequence Viewer
	XP_017455523	(Get FASTA)	NCBI Sequence Viewer
	XP_017455524	(Get FASTA)	NCBI Sequence Viewer
	XP_038950267	(Get FASTA)	NCBI Sequence Viewer
	XP_038950268	(Get FASTA)	NCBI Sequence Viewer
	XP_038950269	(Get FASTA)	NCBI Sequence Viewer
	XP_038950270	(Get FASTA)	NCBI Sequence Viewer
	XP_063131260	(Get FASTA)	NCBI Sequence Viewer
	XP_063131262	(Get FASTA)	NCBI Sequence Viewer
	XP_063131263	(Get FASTA)	NCBI Sequence Viewer
	XP_063131264	(Get FASTA)	NCBI Sequence Viewer
	XP_063131265	(Get FASTA)	NCBI Sequence Viewer
	XP_063131267	(Get FASTA)	NCBI Sequence Viewer
	XP_063131268	(Get FASTA)	NCBI Sequence Viewer
	XP_063131269	(Get FASTA)	NCBI Sequence Viewer
	XP_063131270	(Get FASTA)	NCBI Sequence Viewer
	XP_063131271	(Get FASTA)	NCBI Sequence Viewer
	XP_063131272	(Get FASTA)	NCBI Sequence Viewer
	XP_063131273	(Get FASTA)	NCBI Sequence Viewer
	XP_063131274	(Get FASTA)	NCBI Sequence Viewer
	XP_063131275	(Get FASTA)	NCBI Sequence Viewer
	XP_063131277	(Get FASTA)	NCBI Sequence Viewer
	XP_063131278	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89902	(Get FASTA)	NCBI Sequence Viewer
	EDL90638	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027943
	ENSRNOP00000027943.7
	ENSRNOP00000101199
	ENSRNOP00000101199.1
	ENSRNOP00000102915
	ENSRNOP00000102915.1

RefSeq Acc Id:

NP_001013903 ⟸ NM_001013881

- UniProtKB:

A6KA99 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEEACRTRSQKRAFEPDLTEDDVESKKMKMERGPSELPVDGDSRVMPEPSAGPAQGLLRTTEA
MGTGSGEGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEA
LLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRG
PQNIPAGKPSLQTSSTRIPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQH
SSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVGSAQA
NSTPSSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLV
GLEEVVQNLLETQAGRISATSAAAVLSREPYMCVQCKTDFTCRWREKGGAVMCENCMTSNQKKA
LKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAETAAPHPSLKQVIKPRRKLAFRSGE
ARDWNNGSVLQTSSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTGRHSERVVGTSKGT
ASNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK

hide sequence

RefSeq Acc Id:

XP_006252949 ⟸ XM_006252887

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSEEACRTRSQKRAFEPDLTEDDVESKKMKMERGPSELPVDGDSRVMPEPSAGPAQGLLRTTEA
MGTGSGEGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEA
LLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRG
PQNIPAGKPSLQTSSTRIPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQVSQQIHNI
RQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVGS
AQANSTPSSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFI
YLVGLEEVVQNLLETQAGRISATSAAAVLSREPYMCVQCKTDFTCRWREKGGAVMCENCMTSNQ
KKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAETAAPHPSLKQVIKPRRKLAFR
SGEARDWNNGSVLQTSSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTGRHSERVVGTS
KGTASNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK

hide sequence

RefSeq Acc Id:

XP_017455524 ⟸ XM_017600035

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSEEACRTRSQKRAFEPDLTEDDVESKKMKMERGPSELPVDGDSRVMPEPSAGPAQGLLRTTEA
MGTGSGEGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEA
LLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRG
PQNIPAGKPSLQTSSTRIPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQVSQQIHNI
RQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVGS
AQANSTPSSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFI
YLVGLEEVVQNLLETQAGRISATSAAAVLSREPYMCVQCKTDFTCRWREKGGAVMCENCMTSNQ
KKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAETAAPHPSLKQVIKPRRKLAFR
SGEARDWNNGSVLQTSSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTGRHSERVVGTS
KGTASNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK

hide sequence

RefSeq Acc Id:

XP_017455523 ⟸ XM_017600034

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSEEACRTRSQKRAFEPDLTEDDVESKKMKMERGPSELPVDGDSRVMPEPSAGPAQGLLRTTEA
MGTGSGEGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEA
LLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRG
PQNIPAGKPSLQTSSTRIPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQVSQQIHNI
RQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVGS
AQANSTPSSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFI
YLVGLEEVVQNLLETQAGRISATSAAAVLSREPYMCVQCKTDFTCRWREKGGAVMCENCMTSNQ
KKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAETAAPHPSLKQVIKPRRKLAFR
SGEARDWNNGSVLQTSSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTGRHSERVVGTS
KGTASNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK

hide sequence

Ensembl Acc Id:

ENSRNOP00000027943 ⟸ ENSRNOT00000027943

RefSeq Acc Id:	XP_038950267 ⟸ XM_039094339
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038950269 ⟸ XM_039094341
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038950270 ⟸ XM_039094342
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038950268 ⟸ XM_039094340
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063131273 ⟸ XM_063275203
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063131274 ⟸ XM_063275204
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063131264 ⟸ XM_063275194
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063131275 ⟸ XM_063275205
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063131269 ⟸ XM_063275199
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063131267 ⟸ XM_063275197
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063131277 ⟸ XM_063275207
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063131272 ⟸ XM_063275202
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063131270 ⟸ XM_063275200
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063131262 ⟸ XM_063275192
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063131265 ⟸ XM_063275195
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063131268 ⟸ XM_063275198
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063131271 ⟸ XM_063275201
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063131263 ⟸ XM_063275193
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063131260 ⟸ XM_063275190
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063131278 ⟸ XM_063275208
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000102915 ⟸ ENSRNOT00000168140

Ensembl Acc Id:

ENSRNOP00000101199 ⟸ ENSRNOT00000162058

Protein Domains

Transcriptional repressor p66 coiled-coil MBD2-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V8R7-F1-model_v2	AlphaFold	G3V8R7	1-629	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700049

Promoter ID:

EPDNEW_R10573

Type:

single initiation site

Name:

Gatad2a_1

Description:

GATA zinc finger domain containing 2A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	21,178,198 - 21,178,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310596	AgrOrtholog
BioCyc Gene	G2FUF-11749	BioCyc
Ensembl Genes	ENSRNOG00000022173	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027943	ENTREZGENE
	ENSRNOT00000027943.8	UniProtKB/TrEMBL
	ENSRNOT00000162058	ENTREZGENE
	ENSRNOT00000162058.1	UniProtKB/TrEMBL
	ENSRNOT00000168140	ENTREZGENE
	ENSRNOT00000168140.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.1650	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7383529	IMAGE-MGC_LOAD
InterPro	P66	UniProtKB/TrEMBL
	P66_CC	UniProtKB/TrEMBL
KEGG Report	rno:290669	UniProtKB/TrEMBL
MGC_CLONE	MGC:109147	IMAGE-MGC_LOAD
NCBI Gene	290669	ENTREZGENE
PANTHER	PTHR13455	UniProtKB/TrEMBL
	TRANSCRIPTIONAL REPRESSOR P66-ALPHA	UniProtKB/TrEMBL
Pfam	P66_CC	UniProtKB/TrEMBL
PhenoGen	Gatad2a	PhenoGen
RatGTEx	ENSRNOG00000022173	RatGTEx
UniProt	A0ABK0LCH7_RAT	UniProtKB/TrEMBL
	A0ABK0LDI1_RAT	UniProtKB/TrEMBL
	A6KA99	ENTREZGENE, UniProtKB/TrEMBL
	G3V8R7	ENTREZGENE, UniProtKB/TrEMBL
	Q5EB93_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Gatad2a	GATA zinc finger domain containing 2A	RGD1310596	similar to p66 alpha homolog	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1310596	similar to p66 alpha homolog	RGD1310596_predicted	similar to p66 alpha homolog (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310596_predicted	similar to p66 alpha homolog (predicted)	LOC290669_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC290669_predicted	similar to p66 alpha homolog (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations