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Gene: Ogfod2 (2-oxoglutarate and iron-dependent oxygenase domain containing 2) Rattus norvegicus

Analyze

Symbol:

Ogfod2

Name:

2-oxoglutarate and iron-dependent oxygenase domain containing 2

RGD ID:

1310594

Description:

Orthologous to human OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2; LOC288657; RGD1310594; similar to RIKEN cDNA 5730405M13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,143,329 - 38,146,630 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,142,900 - 38,146,630 (-)	Ensembl				GRCr8
mRatBN7.2	12	32,482,386 - 32,485,688 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,482,377 - 32,485,673 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,662,542 - 33,665,843 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,273,886 - 34,277,187 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,325,784 - 33,329,085 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,907,130 - 37,910,446 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,907,130 - 37,910,439 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,779,493 - 39,782,802 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,606,538 - 33,609,847 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,170,636 - 34,173,945 (-)	NCBI		Celera
RGSC_v3.1	12	33,470,506 - 33,473,221 (-)	NCBI
Cytogenetic Map	12	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

folic acid (ISO)

gentamycin (EXP)

inulin (ISO)

L-methionine (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

quercitrin (ISO)

sunitinib (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloroethene (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nuclear body (ISO)

nucleoplasm (ISO)

Molecular Function

dioxygenase activity (IEA)

iron ion binding (IEA)

L-ascorbic acid binding (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:14701905

Genomics

Comparative Map Data

Ogfod2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,143,329 - 38,146,630 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,142,900 - 38,146,630 (-)	Ensembl				GRCr8
mRatBN7.2	12	32,482,386 - 32,485,688 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,482,377 - 32,485,673 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,662,542 - 33,665,843 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,273,886 - 34,277,187 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,325,784 - 33,329,085 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,907,130 - 37,910,446 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,907,130 - 37,910,439 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,779,493 - 39,782,802 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,606,538 - 33,609,847 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,170,636 - 34,173,945 (-)	NCBI		Celera
RGSC_v3.1	12	33,470,506 - 33,473,221 (-)	NCBI
Cytogenetic Map	12	q15	NCBI

OGFOD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	122,974,726 - 122,980,042 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	122,974,580 - 122,980,043 (+)	Ensembl			hg38	GRCh38
GRCh37	12	123,459,273 - 123,464,589 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	122,025,307 - 122,030,541 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	123,052,147 - 123,057,381 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	120,420,494 - 120,425,728 (+)	NCBI		HuRef
CHM1_1	12	123,427,672 - 123,432,906 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	122,971,251 - 122,976,567 (+)	NCBI		T2T-CHM13v2.0

Ogfod2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,250,384 - 124,253,544 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,250,360 - 124,253,546 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	124,112,321 - 124,115,482 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,112,297 - 124,115,483 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	124,562,347 - 124,565,485 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	124,372,956 - 124,376,094 (+)	NCBI		MGSCv36	mm8
Celera	5	121,188,479 - 121,191,617 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.39	NCBI

Ogfod2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,806,187 - 5,812,070 (-)	Ensembl
ChiLan1.0	NW_004955482	5,807,082 - 5,812,070 (-)	NCBI	ChiLan1.0	ChiLan1.0

OGFOD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	131,070,896 - 131,075,950 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	131,067,335 - 131,072,326 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	120,581,092 - 120,586,538 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	124,815,874 - 124,821,224 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	124,815,870 - 124,821,224 (+)	Ensembl			panPan2	panpan1.1

OGFOD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	6,525,655 - 6,530,333 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	6,526,304 - 6,530,286 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,687,275 - 6,691,957 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,775,661 - 6,780,327 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,776,310 - 6,780,284 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,708,530 - 6,713,196 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,799,982 - 6,804,649 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,754,015 - 6,758,697 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ogfod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	157,801,425 - 157,805,961 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,674,026 - 1,677,827 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,673,464 - 1,678,044 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OGFOD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,890,010 - 29,895,405 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	29,890,003 - 29,895,405 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	31,578,547 - 31,583,932 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OGFOD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,314,648 - 118,320,082 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,315,252 - 118,319,685 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	126,992,486 - 126,997,659 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ogfod2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	22,976,149 - 22,980,145 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	22,975,884 - 22,980,145 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ogfod2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	29,750,368 - 29,753,339 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ogfod2
15 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	98
Count of miRNA genes:	78
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000001433
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

RH138929

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,483,822 - 32,484,014 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,908,575 - 37,908,766	NCBI	Rnor6.0
Rnor_5.0	12	39,780,938 - 39,781,129	UniSTS	Rnor5.0
RGSC_v3.4	12	33,607,983 - 33,608,174	UniSTS	RGSC3.4
Celera	12	34,172,081 - 34,172,272	UniSTS
RH 3.4 Map	12	570.7	UniSTS
Cytogenetic Map	12	q15	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
23	13	85	210	91	90	59	156	59	6	491	284	22	188	117	124	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI578257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD567922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001433 ⟹ ENSRNOP00000001433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,143,329 - 38,146,630 (-)	Ensembl
mRatBN7.2 Ensembl	12	32,482,377 - 32,485,673 (-)	Ensembl
Rnor_6.0 Ensembl	12	37,907,130 - 37,910,439 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131427 ⟹ ENSRNOP00000101954

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,144,234 - 38,146,630 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147811 ⟹ ENSRNOP00000109480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,142,900 - 38,146,630 (-)	Ensembl

RefSeq Acc Id:

NM_001105927 ⟹ NP_001099397

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,143,329 - 38,146,630 (-)	NCBI
mRatBN7.2	12	32,482,386 - 32,485,688 (-)	NCBI
Rnor_6.0	12	37,907,130 - 37,910,439 (-)	NCBI
Rnor_5.0	12	39,779,493 - 39,782,802 (-)	NCBI
RGSC_v3.4	12	33,606,538 - 33,609,847 (-)	RGD
Celera	12	34,170,636 - 34,173,945 (-)	RGD

Sequence:

show sequence

GCGGCCGCTTCACCATGGCGACGGCCGCCCCGCGGCGCTTCTGCCGCTGCGCCTGCTTCTGCTC
CCAGAACTTGTATGTGGCGCGCTACGGGCTGCATCTTCGCTTCAGGGACGAGCAGCAGCTGCGC
CGTGACTACGGCCCGCTCCTGCGCAGCCGTGGCTGTGTCACCCCCAGGGACTTCCAGCAACTCT
TGGAGGAGCTTGAGCAGGAGGTCGGGCGTCGCCGAAGGCTGGGACAGGAATCAGCTGCCAGGAA
GGCTGTCATCGCCAGCTCTTACCACCCGGCAAGGCCTGAGGTCTACAGCTCACTGCAGGATGCT
GCTCTGGCCCCTGAATTTAAGGCTGCAGCTGAATATAGCGGGTCCCCAGGCGCAGATCTTGAGG
GCCTTCTCCAGCGCCTGGAGACAGTGTCGGAGGAGAAGCGCATTTATCGGGTGCCAGTGTTCTC
TGCCAAGTTCTGCCAGACCCTGCTGGAGGAGCTGGAGCATTTTGAGCAGTCGGACATGCCCAAG
GGAAGGCCCAACACCATGAACAACCACGGGGTCCTGATGCATGAGTTAGGCCTAGACGACCCAC
TGGTGACACCGCTTCGGGAACGCTTCCTGCTGCCGCTGATGGCCTTGCTGTACCCAGACTGCGG
TGGGGGCCACCTCGATAGCCACCGTGCCTTTGTGGTCAAGTATGCACTGGGCCAGGACCTGGAG
CTGGGCTGTCACTACGATAACGCCGAGCTCACCCTCAATGTGGCTCTGGGCAAGGACTTCACAG
GGGGTGCCCTATACTTTGGGGGCTTCTTCCAGGCACCTGAAGCCCTGACGGAGACCCTGGAAGT
GGATCACGTGGTAGGCCATGGTATCCTGCACCGTGGCGGCCAGCTGCATGGGGCCCGGCCCCTG
AGCACGGGAGAGCGCTGGAACCTTGTCGTGTGGCTCCGAGCATCTGCCGTTCGGAATAGCCTCT
GTCCCATGTGCTGCCAGAAGCCAGACCTGGTGGATGATGAGGGTTTCGGTGACGGCTTCACCCG
TGAGGAGCCTGCCATGGTGGATGTATGTATGTTGACTTGAGCCTGGTTTTCCCGGAGTTGTCGG
CGCTGTGGCAGCAAAAAACTTGCCATCTTGGGCAGGGAGGGCAGAAATAAACTCTGTGGCCACA
CCATCGCTCAGGTCAGAAGGACACGCAGACTTCTGGGTCATTCTTTGGACGGATGATCTGTAGT
AAGGCAGAGCTGCTGAGAGATAAGCCTTGCTTGAGTTAAAGTACTGAGGGTCCAGGGCAGGGCA
GGCCCAGGAAGAGAAGAAGCCAGGAAAAGACATGGTTTTCATCTAGGTTTTCATCTAATGACGT
CTGGCCTCAGCCTCAGCCCTGGGGAGCTCTGAGTGAGGAGGAAGTCAGTGGCTCAGAGATGGGA
CTGGATAGCAAGGGGGCTGGAGGGGGGCGGGGGTGTCTCAGCAGACATCTACCTCAGAGAGGGT
GGCTCCGGGAACTTAAGTTCACTGCTCTGACTATCAGCAATGCTGGAGAGTGGAGGATGGGGGT
CCAGACTTTCTAGCTGGCATGCCCAGCTGTGCACCTCTGGACTATCTAGGGCCCTGGTTGTTGT
GACTGCCCAAGGAGTTGATGTTTATAAAGCACTTTATAACAGCCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099397	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13605	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000101954.1
	ENSRNOP00000107188
	ENSRNOP00000107188.1
	ENSRNOP00000109480.1

RefSeq Acc Id:

NP_001099397 ⟸ NM_001105927

- UniProtKB:

A6J116 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAAPRRFCRCACFCSQNLYVARYGLHLRFRDEQQLRRDYGPLLRSRGCVTPRDFQQLLEELE
QEVGRRRRLGQESAARKAVIASSYHPARPEVYSSLQDAALAPEFKAAAEYSGSPGADLEGLLQR
LETVSEEKRIYRVPVFSAKFCQTLLEELEHFEQSDMPKGRPNTMNNHGVLMHELGLDDPLVTPL
RERFLLPLMALLYPDCGGGHLDSHRAFVVKYALGQDLELGCHYDNAELTLNVALGKDFTGGALY
FGGFFQAPEALTETLEVDHVVGHGILHRGGQLHGARPLSTGERWNLVVWLRASAVRNSLCPMCC
QKPDLVDDEGFGDGFTREEPAMVDVCMLT

hide sequence

Ensembl Acc Id:

ENSRNOP00000001433 ⟸ ENSRNOT00000001433

Ensembl Acc Id:

ENSRNOP00000109480 ⟸ ENSRNOT00000147811

Ensembl Acc Id:

ENSRNOP00000101954 ⟸ ENSRNOT00000131427

Protein Domains

Fe2OG dioxygenase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZU70-F1-model_v2	AlphaFold	D3ZU70	1-349	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698618

Promoter ID:

EPDNEW_R9143

Type:

single initiation site

Name:

Ogfod2_1

Description:

2-oxoglutarate and iron-dependent oxygenase domain containing2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	37,910,442 - 37,910,502	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310594	AgrOrtholog
BioCyc Gene	G2FUF-19344	BioCyc
Ensembl Genes	ENSRNOG00000001081	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001433	ENTREZGENE
	ENSRNOT00000001433.7	UniProtKB/TrEMBL
	ENSRNOT00000131427.1	UniProtKB/TrEMBL
	ENSRNOT00000147811.1	UniProtKB/TrEMBL
Gene3D-CATH	q2cbj1_9rhob like domain	UniProtKB/TrEMBL
InterPro	Oxoglu/Fe-dep_dioxygenase	UniProtKB/TrEMBL
	Pro_4_hyd_alph	UniProtKB/TrEMBL
KEGG Report	rno:288657	UniProtKB/TrEMBL
NCBI Gene	288657	ENTREZGENE
PANTHER	2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
	2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
Pfam	OGFOD2-like	UniProtKB/TrEMBL
PhenoGen	Ogfod2	PhenoGen
PROSITE	FE2OG_OXY	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001081	RatGTEx
SMART	P4Hc	UniProtKB/TrEMBL
UniProt	A0ABK0L9J4_RAT	UniProtKB/TrEMBL
	A0ABK0LFE4_RAT	UniProtKB/TrEMBL
	A0ABK0LQA4_RAT	UniProtKB/TrEMBL
	A6J116	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Ogfod2	2-oxoglutarate and iron-dependent oxygenase domain containing 2	RGD1310594_predicted	similar to RIKEN cDNA 5730405M13 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310594_predicted	similar to RIKEN cDNA 5730405M13 (predicted)	LOC288657_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288657_predicted	similar to RIKEN cDNA 5730405M13 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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