Phtf2 (putative homeodomain transcription factor 2) - Rat Genome Database

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Gene: Phtf2 (putative homeodomain transcription factor 2) Rattus norvegicus
Analyze
Symbol: Phtf2
Name: putative homeodomain transcription factor 2
RGD ID: 1310593
Description: Predicted to be located in endoplasmic reticulum and membrane. Orthologous to human PHTF2 (putative homeodomain transcription factor 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296762
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,107,341 - 15,222,683 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl415,107,373 - 15,222,692 (+)EnsemblGRCr8
mRatBN7.2414,215,190 - 14,330,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)Ensemblrn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera49,776,667 - 9,890,034 (+)NCBICelera
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Cytogenetic Map4q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:31904090  


Genomics

Comparative Map Data
Phtf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,107,341 - 15,222,683 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl415,107,373 - 15,222,692 (+)EnsemblGRCr8
mRatBN7.2414,215,190 - 14,330,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)Ensemblrn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera49,776,667 - 9,890,034 (+)NCBICelera
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Cytogenetic Map4q11NCBI
PHTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,798,773 - 77,957,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl777,798,761 - 77,957,503 (+)Ensemblhg38GRCh38
GRCh37777,428,090 - 77,586,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,307,433 - 77,424,475 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34777,114,147 - 77,231,190NCBI
Celera772,128,704 - 72,287,454 (+)NCBICelera
Cytogenetic Map7q11.23-q21.11NCBI
HuRef772,031,196 - 72,189,845 (+)NCBIHuRef
CHM1_1777,358,352 - 77,517,058 (+)NCBICHM1_1
T2T-CHM13v2.0779,050,700 - 79,209,413 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,761,172 - 76,918,889 (+)NCBI
Phtf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39520,963,662 - 21,087,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl520,963,661 - 21,087,122 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38520,758,664 - 20,882,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl520,758,663 - 20,882,124 (-)Ensemblmm10GRCm38
MGSCv37520,264,482 - 20,387,942 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36520,270,593 - 20,393,850 (-)NCBIMGSCv36mm8
Celera517,720,360 - 17,839,776 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.83NCBI
Phtf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)Ensembl
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBIChiLan1.0ChiLan1.0
PHTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2695,658,913 - 95,819,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17143,923,652 - 144,084,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0769,724,248 - 69,885,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1783,538,530 - 83,698,107 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,579,418 - 83,695,756 (+)EnsemblpanPan2panpan1.1
PHTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,810,450 - 17,923,837 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,810,469 - 17,921,645 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1817,403,303 - 17,516,663 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01818,129,829 - 18,243,340 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,129,812 - 18,243,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,880,121 - 17,993,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,819,639 - 17,933,061 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,089,315 - 18,202,619 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phtf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,197,474 - 21,302,060 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,221,326 - 102,348,696 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19102,221,033 - 102,348,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29112,741,454 - 112,868,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12170,974,679 - 71,134,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2170,974,474 - 71,134,673 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604232,789,719 - 32,949,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phtf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,981,590 - 27,070,866 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473926,965,769 - 27,070,808 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Phtf2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16150,059,556 - 150,175,344 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Phtf2
1493 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:534
Count of miRNA genes:247
Interacting mature miRNAs:334
Transcripts:ENSRNOT00000066739
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH130459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2414,330,216 - 14,330,396 (+)MAPPERmRatBN7.2
Rnor_6.0410,937,977 - 10,938,156NCBIRnor6.0
Rnor_5.0410,930,071 - 10,930,250UniSTSRnor5.0
RGSC_v3.449,850,142 - 9,850,321UniSTSRGSC3.4
Celera49,889,738 - 9,889,917UniSTS
RH 3.4 Map460.0UniSTS
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000066739   ⟹   ENSRNOP00000059716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl415,107,373 - 15,222,692 (+)Ensembl
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)Ensembl
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132033   ⟹   ENSRNOP00000098983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl415,107,374 - 15,222,574 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145889   ⟹   ENSRNOP00000108919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl415,107,399 - 15,222,575 (+)Ensembl
RefSeq Acc Id: NM_001106577   ⟹   NP_001100047
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,435 - 15,222,683 (+)NCBI
mRatBN7.2414,215,296 - 14,330,549 (+)NCBI
Rnor_6.0410,823,258 - 10,938,273 (+)NCBI
Rnor_5.0410,815,469 - 10,930,367 (+)NCBI
RGSC_v3.449,735,842 - 9,850,438 (+)RGD
Celera49,776,667 - 9,890,034 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107250   ⟹   XP_038963178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,173,982 - 15,222,576 (+)NCBI
mRatBN7.2414,282,306 - 14,330,442 (+)NCBI
RefSeq Acc Id: XM_063285709   ⟹   XP_063141779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,117,170 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285710   ⟹   XP_063141780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,343 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285711   ⟹   XP_063141781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,342 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285712   ⟹   XP_063141782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,344 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285713   ⟹   XP_063141783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,344 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285714   ⟹   XP_063141784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,344 - 15,222,576 (+)NCBI
RefSeq Acc Id: XM_063285715   ⟹   XP_063141785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8415,107,341 - 15,196,369 (+)NCBI
RefSeq Acc Id: NP_001100047   ⟸   NM_001106577
- UniProtKB: D3ZSS0 (UniProtKB/TrEMBL),   A6K5D0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059716   ⟸   ENSRNOT00000066739
RefSeq Acc Id: XP_038963178   ⟸   XM_039107250
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063141785   ⟸   XM_063285715
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063141781   ⟸   XM_063285711
- Peptide Label: isoform X2
- UniProtKB: A6K5D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141780   ⟸   XM_063285710
- Peptide Label: isoform X1
- UniProtKB: D3ZSS0 (UniProtKB/TrEMBL),   A6K5D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141783   ⟸   XM_063285713
- Peptide Label: isoform X3
- UniProtKB: A6K5D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141784   ⟸   XM_063285714
- Peptide Label: isoform X3
- UniProtKB: A6K5D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141782   ⟸   XM_063285712
- Peptide Label: isoform X3
- UniProtKB: A6K5D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141779   ⟸   XM_063285709
- Peptide Label: isoform X1
- UniProtKB: D3ZSS0 (UniProtKB/TrEMBL),   A6K5D0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108919   ⟸   ENSRNOT00000145889
Ensembl Acc Id: ENSRNOP00000098983   ⟸   ENSRNOT00000132033
Protein Domains
PHTF1/2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSS0-F1-model_v2 AlphaFold D3ZSS0 1-747 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692816
Promoter ID:EPDNEW_R3340
Type:initiation region
Name:Phtf2_1
Description:putative homeodomain transcription factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0410,823,291 - 10,823,351EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310593 AgrOrtholog
BioCyc Gene G2FUF-45955 BioCyc
Ensembl Genes ENSRNOG00000013517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066739 ENTREZGENE
  ENSRNOT00000066739.5 UniProtKB/TrEMBL
  ENSRNOT00000132033.1 UniProtKB/TrEMBL
  ENSRNOT00000145889 ENTREZGENE
  ENSRNOT00000145889.1 UniProtKB/TrEMBL
InterPro PHTF1/2 UniProtKB/TrEMBL
  TF_homeodomain_male UniProtKB/TrEMBL
KEGG Report rno:296762 UniProtKB/TrEMBL
NCBI Gene 296762 ENTREZGENE
PANTHER PROTEIN PHTF2 UniProtKB/TrEMBL
  PTHR12680 UniProtKB/TrEMBL
Pfam Phtf-FEM1B_bdg UniProtKB/TrEMBL
PhenoGen Phtf2 PhenoGen
RatGTEx ENSRNOG00000013517 RatGTEx
UniProt A0ABK0L440_RAT UniProtKB/TrEMBL
  A0ABK0M1I0_RAT UniProtKB/TrEMBL
  A6K5D0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Phtf2  putative homeodomain transcription factor 2   Phtf2_predicted  putative homeodomain transcription factor 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Phtf2_predicted  putative homeodomain transcription factor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED