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Gene: C13h1orf115 (similar to human chromosome 1 open reading frame 115) Rattus norvegicus

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Symbol:

C13h1orf115

Name:

similar to human chromosome 1 open reading frame 115

RGD ID:

1310587

Description:

Predicted to be involved in regulation of response to drug. Predicted to be located in 9+0 non-motile cilium. Orthologous to human C1orf115 (chromosome 1 open reading frame 115); INTERACTS WITH (+)-schisandrin B; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC360894; LOC360894; required for drug-induced death protein 1; RGD1310587; similar to hypothetical protein FLJ14146; uncharacterized protein C1orf115 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C1orf115 (chromosome 1 open reading frame 115)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	C130074G19Rik (RIKEN cDNA C130074G19 gene)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	CUNH1orf115 (chromosome unknown C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C1H1orf115 (chromosome 1 C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	CUNH1orf115 (chromosome unknown C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	C10H1orf115 (chromosome 10 C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C25H1orf115 (chromosome 25 C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	CUNH1orf115 (chromosome unknown C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	C10H1orf115 (chromosome 10 C1orf115 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CADM3 (cell adhesion molecule 3)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	C130074G19Rik (RIKEN cDNA C130074G19 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	C1orf115 (chromosome 1 open reading frame 115)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-126g1.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	zgc:194392	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	zgc:194392	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c5h1orf115	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	98,953,841 - 98,963,577 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	98,953,843 - 98,963,810 (-)	Ensembl				GRCr8
mRatBN7.2	13	96,422,308 - 96,432,044 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,422,302 - 96,432,068 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	98,928,570 - 98,938,306 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,327,408 - 100,337,144 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	97,510,809 - 97,520,545 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	102,780,885 - 102,790,621 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	102,780,877 - 102,790,639 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	107,456,593 - 107,466,329 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	100,875,932 - 100,885,668 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	95,939,418 - 95,949,154 (-)	NCBI		Celera
RGSC_v3.1	13	101,064,974 - 101,093,525 (-)	NCBI
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3',5'-cyclic AMP (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

lead(0) (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phytoestrogen (ISO)

quercetin (EXP,ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of response to drug (ISO)

Cellular Component

9+0 non-motile cilium (ISO)

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

C13h1orf115
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	98,953,841 - 98,963,577 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	98,953,843 - 98,963,810 (-)	Ensembl				GRCr8
mRatBN7.2	13	96,422,308 - 96,432,044 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,422,302 - 96,432,068 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	98,928,570 - 98,938,306 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,327,408 - 100,337,144 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	97,510,809 - 97,520,545 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	102,780,885 - 102,790,621 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	102,780,877 - 102,790,639 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	107,456,593 - 107,466,329 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	100,875,932 - 100,885,668 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	95,939,418 - 95,949,154 (-)	NCBI		Celera
RGSC_v3.1	13	101,064,974 - 101,093,525 (-)	NCBI
Cytogenetic Map	13	q26	NCBI

C1orf115
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	220,690,363 - 220,699,153 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	220,690,363 - 220,699,153 (+)	Ensembl			hg38	GRCh38
GRCh37	1	220,863,705 - 220,872,495 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	218,930,251 - 218,939,122 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	194,082,992 - 194,091,863 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	191,538,249 - 191,547,115 (+)	NCBI		HuRef
CHM1_1	1	222,136,076 - 222,144,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	219,930,068 - 219,938,857 (+)	NCBI		T2T-CHM13v2.0

C130074G19Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	184,604,123 - 184,615,233 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	184,604,123 - 184,615,415 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	184,871,926 - 184,883,036 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	184,871,926 - 184,883,218 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	186,695,805 - 186,706,915 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	186,572,714 - 186,583,802 (-)	NCBI		MGSCv36	mm8
Celera	1	191,834,798 - 191,845,748 (-)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI
cM Map	1	89.22	NCBI

CUNH1orf115
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955520	3,064,235 - 3,065,978 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf115
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	28,700,936 - 28,709,942 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	28,662,763 - 28,671,779 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	196,276,253 - 196,285,549 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	201,311,283 - 201,320,273 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

CUNH1orf115
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	56,326,874 - 56,338,324 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936650	1,575,083 - 1,586,548 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936650	1,575,098 - 1,586,515 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C10H1orf115
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	10,115,923 - 10,127,714 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	10,115,917 - 10,127,722 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	12,317,346 - 12,329,153 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C25H1orf115
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	8,844,455 - 8,853,459 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	9,123,440 - 9,132,712 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf115
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624835	4,112,431 - 4,121,013 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C10H1orf115
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	63,041,970 - 63,051,070 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C13h1orf115
59 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	506
Count of miRNA genes:	268
Interacting mature miRNAs:	331
Transcripts:	ENSRNOT00000003177
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

D13Got242

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	96,430,065 - 96,430,275 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	102,788,643 - 102,788,852	NCBI	Rnor6.0
Rnor_5.0	13	107,464,351 - 107,464,560	UniSTS	Rnor5.0
RGSC_v3.4	13	100,883,690 - 100,883,899	UniSTS	RGSC3.4
Celera	13	95,947,176 - 95,947,385	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH132582

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	96,422,508 - 96,422,691 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	102,781,086 - 102,781,268	NCBI	Rnor6.0
Rnor_5.0	13	107,456,794 - 107,456,976	UniSTS	Rnor5.0
RGSC_v3.4	13	100,876,133 - 100,876,315	UniSTS	RGSC3.4
Celera	13	95,939,619 - 95,939,801	UniSTS
RH 3.4 Map	13	653.0	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH139065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	96,424,065 - 96,424,257 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	102,782,643 - 102,782,834	NCBI	Rnor6.0
Rnor_5.0	13	107,458,351 - 107,458,542	UniSTS	Rnor5.0
RGSC_v3.4	13	100,877,690 - 100,877,881	UniSTS	RGSC3.4
Celera	13	95,941,176 - 95,941,367	UniSTS
RH 3.4 Map	13	652.7	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	159	91	90	59	46	59	6	310	146	11	138	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC081867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003177 ⟹ ENSRNOP00000003177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	98,953,843 - 98,963,810 (-)	Ensembl
mRatBN7.2 Ensembl	13	96,422,302 - 96,432,068 (-)	Ensembl
Rnor_6.0 Ensembl	13	102,780,877 - 102,790,639 (-)	Ensembl

RefSeq Acc Id:

NM_001100857 ⟹ NP_001094327

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	98,953,841 - 98,963,577 (-)	NCBI
mRatBN7.2	13	96,422,308 - 96,432,044 (-)	NCBI
Rnor_6.0	13	102,780,885 - 102,790,621 (-)	NCBI
Rnor_5.0	13	107,456,593 - 107,466,329 (-)	NCBI
RGSC_v3.4	13	100,875,932 - 100,885,668 (-)	RGD
Celera	13	95,939,418 - 95,949,154 (-)	RGD

Sequence:

show sequence

CTCCGCGGCATCATGACGGTGGGCGCCCGGCTCCGAAGCAAGGCGAGCAGCTTGGTGGGCCGAG
GGCCCCTGGGGCGATTGCGCCGCGCCGGTGACGAGGAGACAGATGCTATCGTGGAGCACTTGGA
GGGCGAGGACGAGGACCCGGAGAGCCAGGACTGTGAGCGGGAAGAGGACGGGCGGCGCGCCGGG
ACCCCGAGCGCACGCAGGGTGCACCTGGCTGCGCTGCCGGAGCGCTACGACTCCCTGGAGGAGC
CGGCGCCAGGCGACAAACCCAAGAAGAGGTACCGGCGAAAACTGAAGAAGTACGGCAAGAATGT
CGGGAAGGCCATCAGCAAAGGATGCCGGTACATTGTCATTGGCCTACAAGGATTTGCCGCAGCT
TACTCTGCCCCATTTGGAGTGGCCACCAGTGTGGTGTCTTTTGTGCGCTAACCAGAGCTGCAGG
GGCAGGTGACACCAGAATACTTCTGCCCAGGGGACAGTGTGAATCCACCAGCACTTTCAGACTC
GGACTCATGGGAACTCAGAAGAGGAACCCTGCTTCGTGTGCTATTGTTGAACTAGTTGACTGTG
AGGCGGGAGCGATTCCCGCTTATCCGCTGAGCCACTCCTGGACTTGGGTGGATCCAGGAGTCAG
TTCTGCAGAGAATTAGGCCAAGGTCAGGTTGGGGTTAGGATTAGTTTGTTTCCTGTGCTAGATA
GAGCCTTCCGGGGATACTGCAGGCAGGTCCGGGATCTGAGTCATGCGGATAGTGGGTGAATTTG
AGGGAGGAGGACACAGACCTCTAATGTGATGGTTGCTAGTTTCTGAAAAGGTTGAGGGGCTGAC
GGCACTAGCCTTGGCCTCCCATGATCCTTTTACTAAGTACAGCAAAGGAGCTGTTTGTTTCAGA
AGTCTATCTCCCCCATCTCTTTTCTCCACTCAGACTGTCATCTGGGAGTTTAATTACAGGTTTG
GGAAAAAAGAAGGAAGGAAACCATCTTTAAAGACCGTGATGCTTTGTAACCCGAGTTCACAGCT
GTGTGGGGACAATTGAAAGAATATCAAAGTGAATCATTTTCACAGGTCTACATAAGCATGCAGC
TGGCAAGGGGGGAGGGAGGTCAGGATCAGAAGCAAGCTGGGAGGGAGACTGGAACAGGTGCTTT
CAGAGCTGGAACCTGGGTCAGCACAGTCTGGGCCAGCTATCCGGTTTTGAGCTGTCGTGACTGG
CTACACCAGTTCGGGTAACGGGTGCCTAAGTCCCCCATTTGATTGAGGAGAGAGGAGGGAGAGA
GACAGAGATAGAGACAGAGACAGAGCGACAGAGAAAGACTCTGAATGAGACCTGACGTATATTT
AGAGGAGGAGACAGTAAGTGAGAGGTGGGCATGAAGAAAGGAGAAAAAGGGCAAGAACGACATT
GGGAAAGCAGTGGCGGTTGGGAGAGCTGGGCTGGTTGTGTGTAAGACCAGAGGGAGCTGGGAGA
CCAGAATCACCAGGGTAGTTTAGTTCACACCTCTGAGGCCAGCATCTTACTTGGATTCAAAGAT
TAATATAGGCAAGAGTCCCAGGCTTGGCACACACCAATGATGGTTCATGGACTACCATGGAATG
ATGGGAGAAGTGGAGAAAAAAAAATCTTGTGCTGGTGTGTGTCACAACTGTTTTTAAAGTACCC
CCACAGAGAGGTTCCTCTCACCATGACCATTGGCCAACCCCAACAGCAGGCCAGGAGTACAGCT
TTGCTTCTATAATATTCAAGATCCGGAGAAGGTTTCGGGACCACTCTGCAGCATCCGTGTCAGC
CTTTTGGCCTGAGGCTTCCTGGGGCACACAAAGCCGTGTTGCTCAGACATCACCCACTGAGTCC
AACCATTAGGCACTGGTGGGTAGGGTGGGAAGATGGACAGAAGGACAGGTGGAGAAGACAGTAG
CAGTTGCCCATTTAGACTCAGCACCACTCTGGAGGGTCCTGCTGGATATGCAGATCTGGGAAAT
AAGTAGTCTCGATTTAGCCTCAGCAATTACTGCTTACGTGCAGGGTCACATCTGTGACACAGTG
ACACTTGCTTGATGGCCCCAGGATGGGAAGTGGGAAGTAAATAGGAGAAAGGGCCACATGCAGT
CAGCTGCAACGGGGCAGGCATGGGTGGCTTTGCGGGGTGCCTCTCCTGCCACCCAATGCCACTG
AACCCCAGGGAGCCCACAGCGGAGCCCCAAGGAGCCCAACAACATTCTGCCAGGCAGGGAGAGG
TGTGGCGGCCAGGGAAGGGATGGACAGTCAATGCTGCTTCCTTCCCTCCAAGTCTCTTCCTCCC
AAATCATAAAGGCAACAAAGCAAAGTTCGTCTGGCCTGGTGTCTCTCAAAGTCTGGCTAAGAAT
TAATGCAAAATGTCCAAAGTCAAAAGCTCTCGGGGGCTGCCCTGGGACTCTGCCAGGTTTGAGG
TGGACTTCAGCCCCTGGAGCATGCTCTGGTCACATCCCCTGTGTGGGACTCTTGGTTCTGTGAG
CCTGGTTCTTCCAGCACGAAAACTCGGTTCCTGCTGCAGACTGTTCCTTTTCGCTTTTTCTGGT
TATTCTCTTGCGTCCGGCAGCAGGGCCCACACCCCACTGCAACTGAGTTTAAGAGCTTGGCTTC
CCCATTATGGCTTCCAAACCCTTCCTCTGTATCCCTTCTTTGCTTTTAGTGTAAATAAAAGTTC
CAGCTTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094327	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00158	(Get FASTA)	NCBI Sequence Viewer
	EDL94905	(Get FASTA)	NCBI Sequence Viewer
	Q3ZCQ0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001094327 ⟸ NM_001100857
- UniProtKB:	Q3ZCQ0 (UniProtKB/Swiss-Prot), A6JGP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSA RRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAP FGVATSVVSFVR hide sequence

Ensembl Acc Id:

ENSRNOP00000003177 ⟸ ENSRNOT00000003177

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3ZCQ0-F1-model_v2	AlphaFold	Q3ZCQ0	1-140	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699088

Promoter ID:

EPDNEW_R9612

Type:

multiple initiation site

Name:

RGD1310587_1

Description:

similar to hypothetical protein FLJ14146

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	102,790,625 - 102,790,685	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310587	AgrOrtholog
BioCyc Gene	G2FUF-16996	BioCyc
Ensembl Genes	ENSRNOG00000002322	Ensembl
IMAGE_CLONE	IMAGE:7096718	IMAGE-MGC_LOAD
	IMAGE:7096719	IMAGE-MGC_LOAD
InterPro	DUF4710	UniProtKB/Swiss-Prot
KEGG Report	rno:360894	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114576	IMAGE-MGC_LOAD
	MGC:93701	IMAGE-MGC_LOAD
NCBI Gene	360894	ENTREZGENE
PANTHER	PTHR14680	UniProtKB/Swiss-Prot
	SI:DKEY-126G1.9-RELATED	UniProtKB/Swiss-Prot
Pfam	DUF4710	UniProtKB/Swiss-Prot
PhenoGen	C13h1orf115	PhenoGen
RatGTEx	ENSRNOG00000002322	RatGTEx
UniProt	A0A8L2Q047_RAT	UniProtKB/TrEMBL
	A6JGP9	ENTREZGENE, UniProtKB/TrEMBL
	CA115_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C13h1orf115	similar to human chromosome 1 open reading frame 115	RGD1310587	similar to hypothetical protein FLJ14146	Symbol and Name Changed	1299863	APPROVED
2005-12-06	RGD1310587	similar to hypothetical protein FLJ14146	RGD1310587_predicted	similar to hypothetical protein FLJ14146 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310587_predicted	similar to hypothetical protein FLJ14146 (predicted)	LOC360894_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360894_predicted	similar to hypothetical protein FLJ14146 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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