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Gene: Zfp46 (zinc finger protein 46) Rattus norvegicus

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Symbol:

Zfp46

Name:

zinc finger protein 46

RGD ID:

1310584

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF436 (zinc finger protein 436); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298558; zinc finger protein 436

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF436 (zinc finger protein 436)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Zfp46 (zinc finger protein 46)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf436 (zinc finger protein 436)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF774 (zinc finger protein 774)	HGNC	Panther
Alliance orthologs ³
Homo sapiens (human):	ZNF436 (zinc finger protein 436)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp46 (zinc finger protein 46)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp46 (zinc finger protein 46)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,802,887 - 153,813,388 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,802,834 - 153,812,941 (+)	Ensembl				GRCr8
mRatBN7.2	5	148,519,398 - 148,529,903 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	148,520,855 - 148,529,459 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	151,217,298 - 151,227,560 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,991,588 - 153,001,850 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,973,595 - 152,983,857 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	154,644,099 - 154,655,132 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,650,632 - 154,655,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	158,411,338 - 158,422,371 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	155,035,876 - 155,040,376 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,926,032 - 146,930,532 (+)	NCBI		Celera
RGSC_v3.1	5	155,041,591 - 155,047,564 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

cantharidin (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

indometacin (ISO)

leflunomide (ISO)

metformin (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

panobinostat (ISO)

perfluorohexanesulfonic acid (ISO)

phenylephrine (EXP)

pirinixic acid (ISO)

rifampicin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

torcetrapib (ISO)

triadimefon (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vanadyl sulfate (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (ISO)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp46
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,802,887 - 153,813,388 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,802,834 - 153,812,941 (+)	Ensembl				GRCr8
mRatBN7.2	5	148,519,398 - 148,529,903 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	148,520,855 - 148,529,459 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	151,217,298 - 151,227,560 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,991,588 - 153,001,850 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,973,595 - 152,983,857 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	154,644,099 - 154,655,132 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,650,632 - 154,655,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	158,411,338 - 158,422,371 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	155,035,876 - 155,040,376 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,926,032 - 146,930,532 (+)	NCBI		Celera
RGSC_v3.1	5	155,041,591 - 155,047,564 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

ZNF436
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	23,359,448 - 23,369,836 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	23,359,448 - 23,369,836 (-)	Ensembl			hg38	GRCh38
GRCh37	1	23,685,941 - 23,696,329 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	23,558,528 - 23,568,944 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	23,431,773 - 23,440,185	NCBI
Celera	1	22,015,593 - 22,026,011 (-)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	21,937,991 - 21,948,419 (-)	NCBI		HuRef
CHM1_1	1	23,798,637 - 23,809,049 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	23,192,614 - 23,203,014 (-)	NCBI		T2T-CHM13v2.0

Zfp46
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	136,011,479 - 136,021,163 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	136,011,994 - 136,021,253 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	136,284,168 - 136,293,942 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	136,284,683 - 136,293,942 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	135,841,984 - 135,849,857 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	135,558,145 - 135,566,018 (+)	NCBI		MGSCv36	mm8
Celera	4	134,484,155 - 134,492,060 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	68.34	NCBI

Znf436
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	3,364,768 - 3,373,080 (-)	Ensembl
ChiLan1.0	NW_004955452	3,364,768 - 3,374,887 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF436
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	203,571,844 - 203,581,910 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	202,673,145 - 202,684,333 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	22,551,125 - 22,562,496 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	23,539,693 - 23,550,464 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	23,539,693 - 23,550,464 (-)	Ensembl			panPan2	panpan1.1

ZNF436
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	76,049,169 - 76,058,428 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	76,049,313 - 76,057,277 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	72,556,014 - 72,563,328 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	76,607,643 - 76,616,913 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	76,608,687 - 76,616,905 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	73,429,678 - 73,438,941 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	74,437,416 - 74,446,678 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	75,442,235 - 75,451,510 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf436
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	42,761,457 - 42,771,049 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	8,588,850 - 8,594,276 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	8,585,776 - 8,596,116 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF436
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	81,250,629 - 81,262,351 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	81,250,203 - 81,262,346 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZNF436
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	109,303,945 - 109,313,609 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	109,305,453 - 109,311,111 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	7,012,538 - 7,023,058 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf436
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	8,000,086 - 8,009,229 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	8,001,219 - 8,010,735 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf436
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	21,937,563 - 21,948,107 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp46
41 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1187
Count of miRNA genes:	346
Interacting mature miRNAs:	489
Transcripts:	ENSRNOT00000072132
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

D5Wox43

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	148,528,848 - 148,529,066 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	154,654,078 - 154,654,295	NCBI	Rnor6.0
Rnor_5.0	5	158,421,317 - 158,421,534	UniSTS	Rnor5.0
RGSC_v3.4	5	155,039,322 - 155,039,539	UniSTS	RGSC3.4
Celera	5	146,929,478 - 146,929,695	UniSTS
Cytogenetic Map	5	q36	UniSTS

BE120285

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	148,518,879 - 148,519,064 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	154,644,112 - 154,644,296	NCBI	Rnor6.0
Rnor_5.0	5	158,411,351 - 158,411,535	UniSTS	Rnor5.0
RGSC_v3.4	5	155,029,356 - 155,029,540	UniSTS	RGSC3.4
Celera	5	146,919,250 - 146,919,434	UniSTS
RH 3.4 Map	5	1006.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072132 ⟹ ENSRNOP00000067608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	154,650,632 - 154,655,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100707 ⟹ ENSRNOP00000087588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	153,802,834 - 153,812,941 (+)	Ensembl
mRatBN7.2 Ensembl	5	148,520,855 - 148,529,459 (+)	Ensembl

RefSeq Acc Id:

NM_001106691 ⟹ NP_001100161

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,808,888 - 153,813,388 (+)	NCBI
mRatBN7.2	5	148,525,403 - 148,529,903 (+)	NCBI
Rnor_6.0	5	154,650,632 - 154,655,132 (+)	NCBI
Rnor_5.0	5	158,411,338 - 158,422,371 (+)	NCBI
RGSC_v3.4	5	155,035,876 - 155,040,376 (+)	RGD
Celera	5	146,926,032 - 146,930,532 (+)	RGD

Sequence:

show sequence

GCTCAGTACTGGATGGACAGGGTAGAGCTGAGCTTTCGGGGTTCTTAAATGGCGTGCATAAAAT
CCCAGGTTCACTCTCCAGCCCTGAGAATTAGAGGGATAACTAACACTGCCTCGTTCAGCATCTA
GAACTCAGCAGGTCTGTCTGTGCACTGACCCGTCTCCGCACTATTTACTGCTTACAGATTTTGA
GATCAGGAGCGAGAATGAAGCAAACCCAAAACAAGAGTTTAGCGACGATGTGGAATTTGCGACC
ATGTCGGAAGAGCCTCTGGAGAACGCTGAGAAGAATCCTGGAAGCGAAGAGGCTTTTGAAAGTG
GGGACCGATCAGAAAGGCCGTGGGGAGACCTGACAGCCGAGGAGTGGGTAAGCTATCCTCTCCA
GCAAGTCACTGACCTGCTTGTCCACAAGGAGGCGCACACAGGCATCCGCTACCACATTTGTTCT
CAGTGTGGGAAAGCCTTCAGTCAGATCTCAGACCTCAATCGCCACCAAAAAACCCACACGGGAG
ACAGGCCCTATAAGTGTTATGAGTGCGGGAAGGGCTTCAGCCGCAGCTCCCACCTCATCCAGCA
CCAGAGGACACACACCGGCGAGCGGCCGTACGACTGTAACGAGTGTGGGAAAAGCTTCGGAAGG
AGCTCTCACCTCATTCAGCACCAGACGATCCACACCGGGGAGAAGCCTCACAAGTGCACCGAGT
GCGGGAAAAGCTTCTGCCGTCTCTCCCACCTCATCCAGCACCAGAGGACCCACAGCGGGGAGAA
ACCGTACGAGTGCGAGGAGTGCGGGAAGAGCTTCAGCCGCAGCTCCCACCTCGCCCAGCACCAG
AGGACTCACACGGGTGAGAAGCCTTACGAGTGTAACGAGTGTGGGCGGGGCTTCAGCGAGAGGT
CTGACCTCATCAAGCACTACCGGGTGCACACGGGGGAGAGGCCCTACAAGTGTGACGAGTGCGG
GAAGAACTTCAGTCAGAACTCAGACCTGGTGCGGCACCGCCGGGCCCACACCGGGGAAAAGCCG
TACCACTGTAACGAGTGCGGGGAAAACTTCAGCCGCATCTCGCACCTCGTCCAGCACCAGAGGA
CTCACACGGGCGAGAAGCCGTACGAATGCACGGCCTGTGGGAAGAGCTTCAGCCGCAGCTCTCA
TCTCATCACGCACCAGAAGATCCACACCGGGGAGAAGCCCTACGAGTGTACCGAGTGTTGGCGA
AGCTTTGGGGAGAGGTCAGATCTGATTAAGCACCAGAGAACCCACACGGGCGAAAAGCCCTATG
AGTGTGTGCAGTGTGGAAAGGGCTTCACACAGAGCTCCAACCTCATCACGCACCAGAGAGTTCA
CACCGGAGAGAAGCCTTACGAATGTACCGAGTGCGATAAGAGTTTCAGCCGGAGCTCAGCTCTT
ATTAAACACAAGAGAGTTCACACCGACTAGGCCCTGTGTGCGAGTGGACTCGTTTGGAGGCCAA
GTGATGTTTGATATCAACGAGCCAACTTGAGATGGCTCTTTTTAAAGTTCCGACTTGCCTTGTT
GTGGGCTACAGGCTAAAAGGTGAAAGAAAGCAAGACTTTTGAAAATTCTGACCCACAGCTTTGG
GGATGCTGTCCCCTCCTCCAAAACGGTGTTATTGTTCACTGATTATCATATGAATTGATATTGT
ATCATATCATCAAAGTCAGCCCCCTCCCCAGTAACGAGAGCTAAAGACCAGGGGACAAGATGTT
GGTGGTCCCTTGGGCCTGGAAATGGAGTACATCTTTAAAGTATTTTCTCTCTCTCTTATATTTG
GCTCAAAAACACTGCAGTGGGAGAAATGTGGTGTTCACAGCTGCTTTGACAGAAAGCTGGCGGA
CTTGCCCTGAGCTGCGACTGTTCAGCTGTAGTAGCTGGGTTCACACACATCCCTTCCAAGGGGC
TTTTTTATTTTATTTTATTTTTTTAGTAGCTCACCTTCATATGTAAGCATCACTTCGTGCACAG
GATTCTGCATGCGGAAAGCAGCCGAGTGTCTCCTTGTTTCTCACTTGTGTATAGCTTGCATGTT
TTTGAAAGCTGACCGAAGAAACAATGTAATGGGAAAAGGGAGGCACAGGTTTGAGGACCAAGCG
CCCAGGGGCGGTGGTGACGTTAGCCAGAGATAGCCATGGAGACTGCCCTTCATCAGGGTTCTGT
ATTTTCTTCAAAAATCATGTGAGGGATCAGAGTAGGGAAACTGCCCTTAGAAAAAGATAGGGCT
GGAAGTCATGACGGAGCAGAAATAGGAAGGGAACCCACCCCCTCCCCCAGGGAAGGGGGGAGCC
CGGCCCCATTCCCAGGGACAACAGTCAGTGCTGCAGAACCTTTAAGATCACTTGTCCATGTTCT
GCTATCTCTAGGGCTTGATGGAGCCGCGTCCCAGTCTTCACCTTAGCTTGCATAAGGGCAAACA
TATGTATAGTGAAATGTGCATTCTGATAGCAGAAACTGAGTTCGTAAGAATCAGCATGTTCTTG
CGTGAAGTAGATCATAAGATAGAACTATAGACATAACACCGATGTGAGAGGTGTCCTTTATCTT
TCTTGTTACGGAGGGAAAAACAAATCAGCATTAGTGCCCGAGCACAGTGCGCTCCTGTGAAGTT
TGGTTTTGTACAGAACTAAGCACTTGTGTGGATGTGTCCATCAGTTGTGAGTGGACTAGACACT
CAGGTCCCTTGTCCTTTCTCAGCCTGAATTATCTTCTATGATGAGTGGCCTCATCTGCAGAAAC
GGATAAACCTGCGGAGGAATGTGTTTCCGGTGTCCAGATAAAAATAGTTAAAACGAGTTGACCC
ACCCTAGTCCAGCACTGCAGTTCTCCTTAGATAGCCCGGTTGGTGGCGCTCATTCAGTCCCGAG
GGGACCGAGGGGAGTCGGCACCCAGGAGCTGGGACTTTGCCTGTGAGTGAATGCGTTCCTGCAT
ACATTTAAAGAGTCCCAGTGTTTTCTATGGTGCTTCATTGCAAAATTGCAAACATAATTCTTAT
TATTATTAATTTTTTTTTACTAAAGAAAACCCTTTTTGTTAAATCTTCGGGATTTAGCACTTAA
AGCCCAGTACTTTCTCTACAGAGAGTCACTGGCCACAGCTGAATGATACCATATCACTAGTCAC
AGCCTCCAAAAGCAACTGAATGAGAAACCACTCTGAGAGGCTCCAAGTGGTCACTCCCATTTGA
GTACAAACTTGGGGCAGGGCACATGGTTTCTATTCTGTACAAAATCTAGCCTCCTCCGGGTATT
CATACTTTAACTGTTATGTAACTGACATGTTCTTGGTAACTAAACTCAGCTGTGTCTTCTGTAT
CAGTGCAGCTGATGACTTGGGTGGAGTTCAGCATTCTCCCATTGCTTCTCTGAGCCACATAAGT
GACTGCCTGGGAGTGGCTTGTAGAAGACAGAACCTCTAACCCAACTTCATTCCACACCATTTCC
CTCCTCTGTTACACACACACACACACACCAGGCACAGACACACACACACACCAGGCACACACAC
AGACACACAGACACACACACCAGGCACACATACACACCAGGCACACACACACACACACACACAC
ACACACACACCAGGCACACACACCCAGCCCTAGCCTTCCTTTAAAGGTTATGCTGTGTTTCATT
TGCTGCTTTTGCCTTCTAGGAGATGAAAAGGCTCCTGGGAGGTTTCTGATTGCCTTCCCACCTC
TTCGTATGTGTACACTCTAGCTGGGTGGCTAAAAAGGCAGTGGCTGTGCCAGCTCTGTCCACTC
AGCTATGGTCAGCTGCTCCCCTTCCTGCGCTGAGCTGCAGAAGTCACACAACTGTCACCCTTCA
CTAACGCTAAGTGCATGCCTTCTGTTCACAAGTCCCTGGCCGTTTCTGCACATACCAGACAGTC
TGTGCCTGTGTTCTATGGTTGTGGAGAGTGGATGAACAGGTAAATCTGTAGAACAGGTTCCCTT
GGTATTGGTCAATTATCCTAGTGTCTTGTTTATAGCTGTATTATCCTAACAATATTCTATAATT
AAAGGTATAATTTTTAAACTCAAAACAACTGGGTTATTTTGGTAATCTCAAACTTGTTGATGTT
AGAGCCCCTCGTGGGGAATCATTAAAACCGTGCGTGATCATCTTTACCTCTGTGCTGTGCAGGT
TGTACAGGGGTTTGCGTGGGCTTTCCAGTAGGAATTGAGGGCGCACTGTCTTGAACTCAGGTAT
ACTACATCTGGTCTGGTCAGTGTAAAAGCCTGGCTAGATTCCTACAAAGTCATGCCAGTGGCAG
AAGCAACATGGACGTACAGATTGTTAGCTTTGCAGGAAAAAGGAAAACATTCCAAAGGTAAAAA
GGAAGAGTTCTTGTTTTAAAAATGCAGGTTCTGGAAACACGAAGCAGGGCCAATGCCAGGCACA
GTGGTGCACACATTATATCCCAGCCCTCAGGTGGATCTCATCGAAGTCAGCCTGGTCTACATAT
AGGAAGGCCCTGTCTACAAAC

hide sequence

RefSeq Acc Id:

NM_001399075 ⟹ NP_001386004

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,802,887 - 153,812,944 (+)	NCBI
mRatBN7.2	5	148,519,398 - 148,529,459 (+)	NCBI

RefSeq Acc Id:

XM_006239152 ⟹ XP_006239214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,802,909 - 153,812,944 (+)	NCBI
mRatBN7.2	5	148,519,417 - 148,529,544 (+)	NCBI
Rnor_6.0	5	154,644,099 - 154,654,691 (+)	NCBI
Rnor_5.0	5	158,411,338 - 158,422,371 (+)	NCBI

Sequence:

show sequence

TTTTTTTTGAGAGATACACAGCCTATGTCCCAGCCTAGGTCTGTCCTATCTTCCTGTCCATTTC
CTTCTGACTGTTGTAAATCTTATGGGACTGGAACTTACATGGTGGCTGGATACATTTTACAATA
GGTAGAATAGTACCATTTTGTGGCACCTACACATTTGTTAGCTCTACCTTTGGGAGTGCAAGAG
AAGCACAGGTAGAAGAGATACATTATGGTTGGTAGGGGTCCTGCTAGCTCATTTTTAGACCCCT
GAGTAATGTAGCCATAAATAACTGGGCACTGGGGACAGGACACTAATAAAAGCACAGCCGGGAG
TCATATTGGAAAAATAAAAAATTCCCCAAGTCCTTCAGTGTGTGGATACATCTGCAAAACAAAA
GAAAAGCCCCCTTTCCCAGCCTAGGCAGAGAAGTCTCCTGTTCAGTCGGAGACAACAGGCTTCT
GGGCATCAAGCCAAGGTTCTGGGGATATTTATAACTTGAAGAGGGTGGGAGTCCCTAATAAGCT
GCTATATTCTTTTTCCACCACTTCCCTCTCCAAGGCTACAGCAAGCTGGGAGCTTGTCCCCACA
CAGAATCCTTGTTTTGCTTAGCCCTCGCCTTCCATTGTCTAATTCCTTCATTCCAGCTAAGGAA
AGGGAATGCTAGAAGTCCTTCCATTTGGAAGACTCTTGCCGAATGCAGCATAGCCAATGCTGAT
GTTTCTTGGCCAGCTGCTGTGGCCTCGGAGATCTGTTTATGAGATTGTTATTTCCAGGAGCTAT
ATAGAACAGTCTCTGCAGTCTTGAAGCTTCGGGTTCATCTTACAATCAAACTGTCCTTTGCCTG
TTAATCTATGGATTCGGATTTCTACTCCTGGCGCTGAGATCTCTGGAATCTGCTGGTGATATCT
AGAATCTTTCTGAATGTCAGGCCTCTTTAGATCTCTGAGGCTTTAGGATCTCAGGCTTCTCAAG
GATCTTGGAGCTAGCGACCACAGACCAGAAGGCCCCTGTGACATTTGAAGATATGGCCATGTTC
CTCACTCGGGAAGAATGGAGACCCCTGGATCCTACACAAAGAGACCTTTACAGGGACGTGATGC
AGGAGAATTATGGAAATGTCGTCTCACTGGATTTTGAGATCAGGAGCGAGAATGAAGCAAACCC
AAAACAAGAGTTTAGCGACGATGTGGAATTTGCGACCATGTCGGAAGAGCCTCTGGAGAACGCT
GAGAAGAATCCTGGAAGCGAAGAGGCTTTTGAAAGTGGGGACCGATCAGAAAGGCCGTGGGGAG
ACCTGACAGCCGAGGAGTGGGTAAGCTATCCTCTCCAGCAAGTCACTGACCTGCTTGTCCACAA
GGAGGCGCACACAGGCATCCGCTACCACATTTGTTCTCAGTGTGGGAAAGCCTTCAGTCAGATC
TCAGACCTCAATCGCCACCAAAAAACCCACACGGGAGACAGGCCCTATAAGTGTTATGAGTGCG
GGAAGGGCTTCAGCCGCAGCTCCCACCTCATCCAGCACCAGAGGACACACACCGGCGAGCGGCC
GTACGACTGTAACGAGTGTGGGAAAAGCTTCGGAAGGAGCTCTCACCTCATTCAGCACCAGACG
ATCCACACCGGGGAGAAGCCTCACAAGTGCACCGAGTGCGGGAAAAGCTTCTGCCGTCTCTCCC
ACCTCATCCAGCACCAGAGGACCCACAGCGGGGAGAAACCGTACGAGTGCGAGGAGTGCGGGAA
GAGCTTCAGCCGCAGCTCCCACCTCGCCCAGCACCAGAGGACTCACACGGGTGAGAAGCCTTAC
GAGTGTAACGAGTGTGGGCGGGGCTTCAGCGAGAGGTCTGACCTCATCAAGCACTACCGGGTGC
ACACGGGGGAGAGGCCCTACAAGTGTGACGAGTGCGGGAAGAACTTCAGTCAGAACTCAGACCT
GGTGCGGCACCGCCGGGCCCACACCGGGGAAAAGCCGTACCACTGTAACGAGTGCGGGGAAAAC
TTCAGCCGCATCTCGCACCTCGTCCAGCACCAGAGGACTCACACGGGCGAGAAGCCGTACGAAT
GCACGGCCTGTGGGAAGAGCTTCAGCCGCAGCTCTCATCTCATCACGCACCAGAAGATCCACAC
CGGGGAGAAGCCCTACGAGTGTACCGAGTGTTGGCGAAGCTTTGGGGAGAGGTCAGATCTGATT
AAGCACCAGAGAACCCACACGGGCGAAAAGCCCTATGAGTGTGTGCAGTGTGGAAAGGGCTTCA
CACAGAGCTCCAACCTCATCACGCACCAGAGAGTTCACACCGGAGAGAAGCCTTACGAATGTAC
CGAGTGCGATAAGAGTTTCAGCCGGAGCTCAGCTCTTATTAAACACAAGAGAGTTCACACCGAC
TAGGCCCTGTGTGCGAGTGGACTCGTTTGGAGGCCAAGTGATGTTTGATATCAACGAGCCAACT
TGAGATGGCTCTTTTTAAAGTTCCGACTTGCCTTGTTGTGGGCTACAGGCTAAAAGGTGAAAGA
AAGCAAGACTTTTGAAAATTCTGACCCACAGCTTTGGGGATGCTGTCCCCTCCTCCAAAACGGT
GTTATTGTTCACTGATTATCATATGAATTGATATTGTATCATATCATCAAAGTCAGCCCCCTCC
CCAGTAACGAGAGCTAAAGACCAGGGGACAAGATGTTGGTGGTCCCTTGGGCCTGGAAATGGAG
TACATCTTTAAAGTATTTTCTCTCTCTCTTATATTTGGCTCAAAAACACTGCAGTGGGAGAAAT
GTGGTGTTCACAGCTGCTTTGACAGAAAGCTGGCGGACTTGCCCTGAGCTGCGACTGTTCAGCT
GTAGTAGCTGGGTTCACACACATCCCTTCCAAGGGGCTTTTTTATTTTATTTTATTTTTTTAGT
AGCTCACCTTCATATGTAAGCATCACTTCGTGCACAGGATTCTGCATGCGGAAAGCAGCCGAGT
GTCTCCTTGTTTCTCACTTGTGTATAGCTTGCATGTTTTTGAAAGCTGACCGAAGAAACAATGT
AATGGGAAAAGGGAGGCACAGGTTTGAGGACCAAGCGCCCAGGGGCGGTGGTGACGTTAGCCAG
AGATAGCCATGGAGACTGCCCTTCATCAGGGTTCTGTATTTTCTTCAAAAATCATGTGAGGGAT
CAGAGTAGGGAAACTGCCCTTAGAAAAAGATAGGGCTGGAAGTCATGACGGAGCAGAAATAGGA
AGGGAACCCACCCCCTCCCCCAGGGAAGGGGGGAGCCCGGCCCCATTCCCAGGGACAACAGTCA
NNNNNNNNNNNNNNNNNNNNTCACTTGTCCATGTTCTGCTATCTCTAGGGCTTGATGGAGCCGC
GTCCCAGTCTTCACCTTAGCTTGCATAAGGGCAAACATATGTATAGTGAAATGTGCATTCTGAT
AGCAGAAACTGAGTTCGTAAGAATCAGCATGTTCTTGCGTGAAGTAGATCATAAGATAGAACTA
TAGACATAACACCGATGTGAGAGGTGTCCTTTATCTTTCTTGTTACGGAGGGAAAAACAAATCA
GCATTAGTGCCCGAGCACAGTGCGCTCCTGTGAAGTTTGGTTTTGTACAGAACTAAGCACTTGT
GTGGATGTGTCCATCAGTTGTGAGTGGACTAGACACTCAGGTCCCTTGTCCTTTCTCAGCCTGA
ATTATCTTCTATGATGAGTGGCCTCATCTGCAGAAACGGATAAACCTGCGGAGGAATGTGTTTC
CGGTGTCCAGATAAAAATAGTTAAAACGAGTTGACCCACCCTAGTCCAGCACTGCAGTTCTCCT
TAGATAGCCCGGTTGGTGGCGCTCATTCAGTCCCGAGGGGACCGAGGGGAGTCGGCACCCAGGA
GCTGGGACTTTGCCTGTGAGTGAATGCGTTCCTGCATACATTTAAAGAGTCCCAGTGTTTTCTA
TGGTGCTTCATTGCAAAATTGCAAACATAATTCTTATTATTATTAATTTTTTTTTACTAAAGAA
AACCCTTTTTGTTAAATCTTCGGGATTTAGCACTTAAAGCCCAGTACTTTCTCTACAGAGAGTC
ACTGGCCACAGCTGAATGATACCATATCACTAGTCACAGCCTCCAAAAGCAACTGAATGAGAAA
CCACTCTGAGAGGCTCCAAGTGGTCACTCCCATTTGAGTACAAACTTGGGGCAGGGCACATGGT
TTCTATTCTGTACAAAATCTAGCCTCCTCCGGGTATTCATACTTTAACTGTTATGTAACTGACA
TGTTCTTGGTAACTAAACTCAGCTGTGTCTTCTGTATCAGTGCAGCTGATGACTTGGGTGGAGT
TCAGCATTCTCCCATTGCTTCTCTGAGCCACATAAGTGACTGCCTGGGAGTGGCTTGTAGAAGA
CAGAACCTCTAACCCAACTTCATTCCACACCATTTCCCTCCTCTGTTACACACACACACACACA
CCAGGCACAGACACACACACACACCAGGCACACACACAGACACACAGACACACACACCAGGCAC
ACATACACACCAGGCACACACACACACACACACACACACACACACACCAGGCACACACACCCAG
CCCTAGCCTTCCTTTAAAGGTTATGCTGTGTTTCATTTGCTGCTTTTGCCTTCTAGGAGATGAA
AAGGCTCCTGGGAGGTTTCTGATTGCCTTCCCACCTCTTCGTATGTGTACACTCTAGCTGGGTG
GCTAAAAAGGCAGTGGCTGTGCCAGCTCTGTCCACTCAGCTATGGTCAGCTGCTCCCCTTCCTG
CGCTGAGCTGCAGAAGTCACACAACTGTCACCCTTCACTAACGCTAAGTGCATGCCTTCTGTTC
ACAAGTCCCTGGCCGTTTCTGCACATACCAGACAGTCTGTGCCTGTGTTCTATGGTTGTGGAGA
GTGGATGAACAGGTAAATCTGTAGAACAGGTTCCCTTGGTATTGGTCAATTATCCTAGTGTCTT
GTTTATAGCTGTATTATCCTAACAATATTCTATAATTAAAGGTATAATTTTTAAACTCAAAACA
A

hide sequence

RefSeq Acc Id:

XM_008764218 ⟹ XP_008762440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,804,279 - 153,812,944 (+)	NCBI
mRatBN7.2	5	148,520,128 - 148,529,544 (+)	NCBI
Rnor_6.0	5	154,646,060 - 154,654,691 (+)	NCBI

Sequence:

show sequence

AGATTGCTGCCGGAAAGGTCCCAGCCCGGAGATGGAAGATCAGAGGCGTTCTATGGGCTGGGTT
GAAAGCCTCCTCCCTCGAATTGGATCGGCCTGACCCCCAACCCAGGGGCACCCAGCCAATGCCT
GTCCTCTCCTACTCCAACATTACACGTACTCGATATTAACCGAGACACGGAGAGTGGGTGACTC
GGGATTCAGGAAGGAGAGTGACCCGTCCTGGGCCTTCCCCCCAAACCCTGCGACCAGAACTCCA
GCCCTAGGAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTACTCATGTCTGGGTCCCAGGC
CCCTGTGACATTTGAAGATATGGCCATGTTCCTCACTCGGGAAGAATGGAGACCCCTGGATCCT
ACACAAAGAGACCTTTACAGGGACGTGATGCAGGAGAATTATGGAAATGTCGTCTCACTGGATT
TTGAGATCAGGAGCGAGAATGAAGCAAACCCAAAACAAGAGTTTAGCGACGATGTGGAATTTGC
GACCATGTCGGAAGAGCCTCTGGAGAACGCTGAGAAGAATCCTGGAAGCGAAGAGGCTTTTGAA
AGTGGGGACCGATCAGAAAGGCCGTGGGGAGACCTGACAGCCGAGGAGTGGGTAAGCTATCCTC
TCCAGCAAGTCACTGACCTGCTTGTCCACAAGGAGGCGCACACAGGCATCCGCTACCACATTTG
TTCTCAGTGTGGGAAAGCCTTCAGTCAGATCTCAGACCTCAATCGCCACCAAAAAACCCACACG
GGAGACAGGCCCTATAAGTGTTATGAGTGCGGGAAGGGCTTCAGCCGCAGCTCCCACCTCATCC
AGCACCAGAGGACACACACCGGCGAGCGGCCGTACGACTGTAACGAGTGTGGGAAAAGCTTCGG
AAGGAGCTCTCACCTCATTCAGCACCAGACGATCCACACCGGGGAGAAGCCTCACAAGTGCACC
GAGTGCGGGAAAAGCTTCTGCCGTCTCTCCCACCTCATCCAGCACCAGAGGACCCACAGCGGGG
AGAAACCGTACGAGTGCGAGGAGTGCGGGAAGAGCTTCAGCCGCAGCTCCCACCTCGCCCAGCA
CCAGAGGACTCACACGGGTGAGAAGCCTTACGAGTGTAACGAGTGTGGGCGGGGCTTCAGCGAG
AGGTCTGACCTCATCAAGCACTACCGGGTGCACACGGGGGAGAGGCCCTACAAGTGTGACGAGT
GCGGGAAGAACTTCAGTCAGAACTCAGACCTGGTGCGGCACCGCCGGGCCCACACCGGGGAAAA
GCCGTACCACTGTAACGAGTGCGGGGAAAACTTCAGCCGCATCTCGCACCTCGTCCAGCACCAG
AGGACTCACACGGGCGAGAAGCCGTACGAATGCACGGCCTGTGGGAAGAGCTTCAGCCGCAGCT
CTCATCTCATCACGCACCAGAAGATCCACACCGGGGAGAAGCCCTACGAGTGTACCGAGTGTTG
GCGAAGCTTTGGGGAGAGGTCAGATCTGATTAAGCACCAGAGAACCCACACGGGCGAAAAGCCC
TATGAGTGTGTGCAGTGTGGAAAGGGCTTCACACAGAGCTCCAACCTCATCACGCACCAGAGAG
TTCACACCGGAGAGAAGCCTTACGAATGTACCGAGTGCGATAAGAGTTTCAGCCGGAGCTCAGC
TCTTATTAAACACAAGAGAGTTCACACCGACTAGGCCCTGTGTGCGAGTGGACTCGTTTGGAGG
CCAAGTGATGTTTGATATCAACGAGCCAACTTGAGATGGCTCTTTTTAAAGTTCCGACTTGCCT
TGTTGTGGGCTACAGGCTAAAAGGTGAAAGAAAGCAAGACTTTTGAAAATTCTGACCCACAGCT
TTGGGGATGCTGTCCCCTCCTCCAAAACGGTGTTATTGTTCACTGATTATCATATGAATTGATA
TTGTATCATATCATCAAAGTCAGCCCCCTCCCCAGTAACGAGAGCTAAAGACCAGGGGACAAGA
TGTTGGTGGTCCCTTGGGCCTGGAAATGGAGTACATCTTTAAAGTATTTTCTCTCTCTCTTATA
TTTGGCTCAAAAACACTGCAGTGGGAGAAATGTGGTGTTCACAGCTGCTTTGACAGAAAGCTGG
CGGACTTGCCCTGAGCTGCGACTGTTCAGCTGTAGTAGCTGGGTTCACACACATCCCTTCCAAG
GGGCTTTTTTATTTTATTTTATTTTTTTAGTAGCTCACCTTCATATGTAAGCATCACTTCGTGC
ACAGGATTCTGCATGCGGAAAGCAGCCGAGTGTCTCCTTGTTTCTCACTTGTGTATAGCTTGCA
TGTTTTTGAAAGCTGACCGAAGAAACAATGTAATGGGAAAAGGGAGGCACAGGTTTGAGGACCA
AGCGCCCAGGGGCGGTGGTGACGTTAGCCAGAGATAGCCATGGAGACTGCCCTTCATCAGGGTT
CTGTATTTTCTTCAAAAATCATGTGAGGGATCAGAGTAGGGAAACTGCCCTTAGAAAAAGATAG
GGCTGGAAGTCATGACGGAGCAGAAATAGGAAGGGAACCCACCCCCTCCCCCAGGGAAGGGGGG
AGCCCGGCCCCATTCCCAGGGACAACAGTCANNNNNNNNNNNNNNNNNNNNTCACTTGTCCATG
TTCTGCTATCTCTAGGGCTTGATGGAGCCGCGTCCCAGTCTTCACCTTAGCTTGCATAAGGGCA
AACATATGTATAGTGAAATGTGCATTCTGATAGCAGAAACTGAGTTCGTAAGAATCAGCATGTT
CTTGCGTGAAGTAGATCATAAGATAGAACTATAGACATAACACCGATGTGAGAGGTGTCCTTTA
TCTTTCTTGTTACGGAGGGAAAAACAAATCAGCATTAGTGCCCGAGCACAGTGCGCTCCTGTGA
AGTTTGGTTTTGTACAGAACTAAGCACTTGTGTGGATGTGTCCATCAGTTGTGAGTGGACTAGA
CACTCAGGTCCCTTGTCCTTTCTCAGCCTGAATTATCTTCTATGATGAGTGGCCTCATCTGCAG
AAACGGATAAACCTGCGGAGGAATGTGTTTCCGGTGTCCAGATAAAAATAGTTAAAACGAGTTG
ACCCACCCTAGTCCAGCACTGCAGTTCTCCTTAGATAGCCCGGTTGGTGGCGCTCATTCAGTCC
CGAGGGGACCGAGGGGAGTCGGCACCCAGGAGCTGGGACTTTGCCTGTGAGTGAATGCGTTCCT
GCATACATTTAAAGAGTCCCAGTGTTTTCTATGGTGCTTCATTGCAAAATTGCAAACATAATTC
TTATTATTATTAATTTTTTTTTACTAAAGAAAACCCTTTTTGTTAAATCTTCGGGATTTAGCAC
TTAAAGCCCAGTACTTTCTCTACAGAGAGTCACTGGCCACAGCTGAATGATACCATATCACTAG
TCACAGCCTCCAAAAGCAACTGAATGAGAAACCACTCTGAGAGGCTCCAAGTGGTCACTCCCAT
TTGAGTACAAACTTGGGGCAGGGCACATGGTTTCTATTCTGTACAAAATCTAGCCTCCTCCGGG
TATTCATACTTTAACTGTTATGTAACTGACATGTTCTTGGTAACTAAACTCAGCTGTGTCTTCT
GTATCAGTGCAGCTGATGACTTGGGTGGAGTTCAGCATTCTCCCATTGCTTCTCTGAGCCACAT
AAGTGACTGCCTGGGAGTGGCTTGTAGAAGACAGAACCTCTAACCCAACTTCATTCCACACCAT
TTCCCTCCTCTGTTACACACACACACACACACCAGGCACAGACACACACACACACCAGGCACAC
ACACAGACACACAGACACACACACCAGGCACACATACACACCAGGCACACACACACACACACAC
ACACACACACACACCAGGCACACACACCCAGCCCTAGCCTTCCTTTAAAGGTTATGCTGTGTTT
CATTTGCTGCTTTTGCCTTCTAGGAGATGAAAAGGCTCCTGGGAGGTTTCTGATTGCCTTCCCA
CCTCTTCGTATGTGTACACTCTAGCTGGGTGGCTAAAAAGGCAGTGGCTGTGCCAGCTCTGTCC
ACTCAGCTATGGTCAGCTGCTCCCCTTCCTGCGCTGAGCTGCAGAAGTCACACAACTGTCACCC
TTCACTAACGCTAAGTGCATGCCTTCTGTTCACAAGTCCCTGGCCGTTTCTGCACATACCAGAC
AGTCTGTGCCTGTGTTCTATGGTTGTGGAGAGTGGATGAACAGGTAAATCTGTAGAACAGGTTC
CCTTGGTATTGGTCAATTATCCTAGTGTCTTGTTTATAGCTGTATTATCCTAACAATATTCTAT
AATTAAAGGTATAATTTTTAAACTCAAAACAA

hide sequence

RefSeq Acc Id:

XM_008764219 ⟹ XP_008762441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,802,910 - 153,812,944 (+)	NCBI
mRatBN7.2	5	148,519,418 - 148,529,544 (+)	NCBI
Rnor_6.0	5	154,644,099 - 154,654,691 (+)	NCBI

Sequence:

show sequence

TTTTTTTTGAGAGATACACAGCCTATGTCCCAGCCTAGGTCTGTCCTATCTTCCTGTCCATTTC
CTTCTGACTGTTGTAAATCTTATGGGACTGGAACTTACATGGTGGCTGGATACATTTTACAATA
GGTAGAATAGTACCATTTTGTGGCACCTACACATTTGTTAGCTCTACCTTTGGGAGTGCAAGAG
AAGCACAGGTAGAAGAGATACATTATGGTTGGTAGGGGTCCTGCTAGCTCATTTTTAGACCCCT
GAGTAATGTAGCCATAAATAACTGGGCACTGGGGACAGGACACTAATAAAAGCACAGCCGGGAG
TCATATTGGAAAAATAAAAAATTCCCCAAGTCCTTCAGTGTGTGGATACATCTGCAAAACAAAA
GAAAAGCCCCCTTTCCCAGCCTAGGCAGAGAAGTCTCCTGTTCAGTCGGAGACAACAGGCTTCT
GGGCATCAAGCCAAGGTTCTGGGGATATTTATAACTTGAAGAGGGTGGGAGTCCCTAATAAGCT
GCTATATTCTTTTTCCACCACTTCCCTCTCCAAGGCTACAGCAAGCTGGGAGCTTGTCCCCACA
CAGAATCCTTGTTTTGCTTAGCCCTCGCCTTCCATTGTCTAATTCCTTCATTCCAGCTAAGGAA
AGGGAATGCTAGAAGTCCTTCCATTTGGAAGACTCTTGCCGAATGCAGCATAGCCAATGCTGAT
GTTTCTTGGCCAGCTGCTGTGGCCTCGGAGATCTGTTTATGAGATTGTTATTTCCAGGAGCTAT
ATAGAACAGTCTCTGCAGTCTTGAAGCTTCGGGTTCATCTTACAATCAAACTGTCCTTTGCCTG
TTAATCTATGGATTCGGATTTCTACTCCTGGCGCTGAGATCTCTGGAATCTGCTGGTGATATCT
AGAATCTTTCTGAATGTCAGGCCTCTTTAGATCTCTGAGGCTTTAGGATCTCAGGCTTCTCAAG
GATCTTGGAGCTAGCGACCACAGACCAGAAGGAGACGAACGCTTGAGCCCGAGATGGCAGCCAC
CCTACTCATGTCTGGGTCCCAGATGAGACTTAATGCCATTGCCTTCTCGACATTTCTAACCATG
TCTCTAATTTCAAGAAGAAAAGCTGGTTCTAAACTCCTAGGTACCAAGTAGTGAGGAAGCATTG
TGTTGATTTCAGGCCCCTGTGACATTTGAAGATATGGCCATGTTCCTCACTCGGGAAGAATGGA
GACCCCTGGATCCTACACAAAGAGACCTTTACAGGGACGTGATGCAGGAGAATTATGGAAATGT
CGTCTCACTGGATTTTGAGATCAGGAGCGAGAATGAAGCAAACCCAAAACAAGAGTTTAGCGAC
GATGTGGAATTTGCGACCATGTCGGAAGAGCCTCTGGAGAACGCTGAGAAGAATCCTGGAAGCG
AAGAGGCTTTTGAAAGTGGGGACCGATCAGAAAGGCCGTGGGGAGACCTGACAGCCGAGGAGTG
GGTAAGCTATCCTCTCCAGCAAGTCACTGACCTGCTTGTCCACAAGGAGGCGCACACAGGCATC
CGCTACCACATTTGTTCTCAGTGTGGGAAAGCCTTCAGTCAGATCTCAGACCTCAATCGCCACC
AAAAAACCCACACGGGAGACAGGCCCTATAAGTGTTATGAGTGCGGGAAGGGCTTCAGCCGCAG
CTCCCACCTCATCCAGCACCAGAGGACACACACCGGCGAGCGGCCGTACGACTGTAACGAGTGT
GGGAAAAGCTTCGGAAGGAGCTCTCACCTCATTCAGCACCAGACGATCCACACCGGGGAGAAGC
CTCACAAGTGCACCGAGTGCGGGAAAAGCTTCTGCCGTCTCTCCCACCTCATCCAGCACCAGAG
GACCCACAGCGGGGAGAAACCGTACGAGTGCGAGGAGTGCGGGAAGAGCTTCAGCCGCAGCTCC
CACCTCGCCCAGCACCAGAGGACTCACACGGGTGAGAAGCCTTACGAGTGTAACGAGTGTGGGC
GGGGCTTCAGCGAGAGGTCTGACCTCATCAAGCACTACCGGGTGCACACGGGGGAGAGGCCCTA
CAAGTGTGACGAGTGCGGGAAGAACTTCAGTCAGAACTCAGACCTGGTGCGGCACCGCCGGGCC
CACACCGGGGAAAAGCCGTACCACTGTAACGAGTGCGGGGAAAACTTCAGCCGCATCTCGCACC
TCGTCCAGCACCAGAGGACTCACACGGGCGAGAAGCCGTACGAATGCACGGCCTGTGGGAAGAG
CTTCAGCCGCAGCTCTCATCTCATCACGCACCAGAAGATCCACACCGGGGAGAAGCCCTACGAG
TGTACCGAGTGTTGGCGAAGCTTTGGGGAGAGGTCAGATCTGATTAAGCACCAGAGAACCCACA
CGGGCGAAAAGCCCTATGAGTGTGTGCAGTGTGGAAAGGGCTTCACACAGAGCTCCAACCTCAT
CACGCACCAGAGAGTTCACACCGGAGAGAAGCCTTACGAATGTACCGAGTGCGATAAGAGTTTC
AGCCGGAGCTCAGCTCTTATTAAACACAAGAGAGTTCACACCGACTAGGCCCTGTGTGCGAGTG
GACTCGTTTGGAGGCCAAGTGATGTTTGATATCAACGAGCCAACTTGAGATGGCTCTTTTTAAA
GTTCCGACTTGCCTTGTTGTGGGCTACAGGCTAAAAGGTGAAAGAAAGCAAGACTTTTGAAAAT
TCTGACCCACAGCTTTGGGGATGCTGTCCCCTCCTCCAAAACGGTGTTATTGTTCACTGATTAT
CATATGAATTGATATTGTATCATATCATCAAAGTCAGCCCCCTCCCCAGTAACGAGAGCTAAAG
ACCAGGGGACAAGATGTTGGTGGTCCCTTGGGCCTGGAAATGGAGTACATCTTTAAAGTATTTT
CTCTCTCTCTTATATTTGGCTCAAAAACACTGCAGTGGGAGAAATGTGGTGTTCACAGCTGCTT
TGACAGAAAGCTGGCGGACTTGCCCTGAGCTGCGACTGTTCAGCTGTAGTAGCTGGGTTCACAC
ACATCCCTTCCAAGGGGCTTTTTTATTTTATTTTATTTTTTTAGTAGCTCACCTTCATATGTAA
GCATCACTTCGTGCACAGGATTCTGCATGCGGAAAGCAGCCGAGTGTCTCCTTGTTTCTCACTT
GTGTATAGCTTGCATGTTTTTGAAAGCTGACCGAAGAAACAATGTAATGGGAAAAGGGAGGCAC
AGGTTTGAGGACCAAGCGCCCAGGGGCGGTGGTGACGTTAGCCAGAGATAGCCATGGAGACTGC
CCTTCATCAGGGTTCTGTATTTTCTTCAAAAATCATGTGAGGGATCAGAGTAGGGAAACTGCCC
TTAGAAAAAGATAGGGCTGGAAGTCATGACGGAGCAGAAATAGGAAGGGAACCCACCCCCTCCC
CCAGGGAAGGGGGGAGCCCGGCCCCATTCCCAGGGACAACAGTCANNNNNNNNNNNNNNNNNNN
NTCACTTGTCCATGTTCTGCTATCTCTAGGGCTTGATGGAGCCGCGTCCCAGTCTTCACCTTAG
CTTGCATAAGGGCAAACATATGTATAGTGAAATGTGCATTCTGATAGCAGAAACTGAGTTCGTA
AGAATCAGCATGTTCTTGCGTGAAGTAGATCATAAGATAGAACTATAGACATAACACCGATGTG
AGAGGTGTCCTTTATCTTTCTTGTTACGGAGGGAAAAACAAATCAGCATTAGTGCCCGAGCACA
GTGCGCTCCTGTGAAGTTTGGTTTTGTACAGAACTAAGCACTTGTGTGGATGTGTCCATCAGTT
GTGAGTGGACTAGACACTCAGGTCCCTTGTCCTTTCTCAGCCTGAATTATCTTCTATGATGAGT
GGCCTCATCTGCAGAAACGGATAAACCTGCGGAGGAATGTGTTTCCGGTGTCCAGATAAAAATA
GTTAAAACGAGTTGACCCACCCTAGTCCAGCACTGCAGTTCTCCTTAGATAGCCCGGTTGGTGG
CGCTCATTCAGTCCCGAGGGGACCGAGGGGAGTCGGCACCCAGGAGCTGGGACTTTGCCTGTGA
GTGAATGCGTTCCTGCATACATTTAAAGAGTCCCAGTGTTTTCTATGGTGCTTCATTGCAAAAT
TGCAAACATAATTCTTATTATTATTAATTTTTTTTTACTAAAGAAAACCCTTTTTGTTAAATCT
TCGGGATTTAGCACTTAAAGCCCAGTACTTTCTCTACAGAGAGTCACTGGCCACAGCTGAATGA
TACCATATCACTAGTCACAGCCTCCAAAAGCAACTGAATGAGAAACCACTCTGAGAGGCTCCAA
GTGGTCACTCCCATTTGAGTACAAACTTGGGGCAGGGCACATGGTTTCTATTCTGTACAAAATC
TAGCCTCCTCCGGGTATTCATACTTTAACTGTTATGTAACTGACATGTTCTTGGTAACTAAACT
CAGCTGTGTCTTCTGTATCAGTGCAGCTGATGACTTGGGTGGAGTTCAGCATTCTCCCATTGCT
TCTCTGAGCCACATAAGTGACTGCCTGGGAGTGGCTTGTAGAAGACAGAACCTCTAACCCAACT
TCATTCCACACCATTTCCCTCCTCTGTTACACACACACACACACACCAGGCACAGACACACACA
CACACCAGGCACACACACAGACACACAGACACACACACCAGGCACACATACACACCAGGCACAC
ACACACACACACACACACACACACACACCAGGCACACACACCCAGCCCTAGCCTTCCTTTAAAG
GTTATGCTGTGTTTCATTTGCTGCTTTTGCCTTCTAGGAGATGAAAAGGCTCCTGGGAGGTTTC
TGATTGCCTTCCCACCTCTTCGTATGTGTACACTCTAGCTGGGTGGCTAAAAAGGCAGTGGCTG
TGCCAGCTCTGTCCACTCAGCTATGGTCAGCTGCTCCCCTTCCTGCGCTGAGCTGCAGAAGTCA
CACAACTGTCACCCTTCACTAACGCTAAGTGCATGCCTTCTGTTCACAAGTCCCTGGCCGTTTC
TGCACATACCAGACAGTCTGTGCCTGTGTTCTATGGTTGTGGAGAGTGGATGAACAGGTAAATC
TGTAGAACAGGTTCCCTTGGTATTGGTCAATTATCCTAGTGTCTTGTTTATAGCTGTATTATCC
TAACAATATTCTATAATTAAAGGTATAATTTTTAAACTCAAAACAA

hide sequence

RefSeq Acc Id:

XM_039109642 ⟹ XP_038965570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,804,279 - 153,812,944 (+)	NCBI
mRatBN7.2	5	148,520,128 - 148,529,544 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100161	(Get FASTA)	NCBI Sequence Viewer
	NP_001386004	(Get FASTA)	NCBI Sequence Viewer
	XP_006239214	(Get FASTA)	NCBI Sequence Viewer
	XP_008762440	(Get FASTA)	NCBI Sequence Viewer
	XP_008762441	(Get FASTA)	NCBI Sequence Viewer
	XP_038965570	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80808	(Get FASTA)	NCBI Sequence Viewer
	EDL80809	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000087588
	ENSRNOP00000087588.1

RefSeq Acc Id:	NP_001100161 ⟸ NM_001106691
- Peptide Label:	isoform 2
- UniProtKB:	A6ITA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEEPLENAEKNPGSEEAFESGDRSERPWGDLTAEEWVSYPLQQVTDLLVHKEAHTGIRYHICS QCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGR SSHLIQHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQ RTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKP YHCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECTECWR SFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECDKSFSRSSAL IKHKRVHTD hide sequence

RefSeq Acc Id:	XP_006239214 ⟸ XM_006239152
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GFA5 (UniProtKB/TrEMBL), A6ITA7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAMFLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEP LENAEKNPGSEEAFESGDRSERPWGDLTAEEWVSYPLQQVTDLLVHKEAHTGIRYHICSQCGKA FSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLI QHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTG EKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNE CGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECTECWRSFGER SDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECDKSFSRSSALIKHKR VHTD hide sequence

RefSeq Acc Id:

XP_008762440 ⟸ XM_008764218

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAATLLMSGSQAPVTFEDMAMFLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEAN
PKQEFSDDVEFATMSEEPLENAEKNPGSEEAFESGDRSERPWGDLTAEEWVSYPLQQVTDLLVH
KEAHTGIRYHICSQCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGER
PYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECG
KSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSD
LVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIH
TGEKPYECTECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYEC
TECDKSFSRSSALIKHKRVHTD

hide sequence

RefSeq Acc Id:	XP_008762441 ⟸ XM_008764219
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GFA5 (UniProtKB/TrEMBL), A6ITA7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAMFLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEP LENAEKNPGSEEAFESGDRSERPWGDLTAEEWVSYPLQQVTDLLVHKEAHTGIRYHICSQCGKA FSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLI QHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTG EKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNE CGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECTECWRSFGER SDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECDKSFSRSSALIKHKR VHTD hide sequence

Ensembl Acc Id:

ENSRNOP00000067608 ⟸ ENSRNOT00000072132

RefSeq Acc Id:	XP_038965570 ⟸ XM_039109642
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GFA5 (UniProtKB/TrEMBL), A6ITA7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000087588 ⟸ ENSRNOT00000100707

RefSeq Acc Id:	NP_001386004 ⟸ NM_001399075
- Peptide Label:	isoform 1

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RDB0-F1-model_v2	AlphaFold	M0RDB0	1-393	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310584	AgrOrtholog
BioCyc Gene	G2FUF-39506	BioCyc
Ensembl Genes	ENSRNOG00000049975	Ensembl
	ENSRNOG00000070170	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000100707	ENTREZGENE
	ENSRNOT00000100707.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_Transcription_Reg	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	298558	ENTREZGENE
PANTHER	C2H2-TYPE DOMAIN-CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	UniProtKB/TrEMBL
	ODD-SKIPPED - RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 208-LIKE	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp46	PhenoGen
PRINTS	ZINCFINGER	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000049975	RatGTEx
	ENSRNOG00000070170	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6GFA5	ENTREZGENE, UniProtKB/TrEMBL
	A6ITA7	ENTREZGENE, UniProtKB/TrEMBL
	A6ITA8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zfp46	zinc finger protein 46	Zfp46_predicted	zinc finger protein 46 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp46_predicted	zinc finger protein 46 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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