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Gene: Tulp2 (TUB like protein 2) Rattus norvegicus

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Symbol:

Tulp2

Name:

TUB like protein 2

RGD ID:

1310551

Description:

Predicted to be involved in protein localization to cilium. Predicted to be located in cytoplasm and extracellular region. Predicted to be active in cilium. Orthologous to human TULP2 (TUB like protein 2); INTERACTS WITH 2-methoxyethanol; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361576; tubby-like protein 2; tubby-related protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TULP2 (TUB like protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Tulp2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tulp2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TULP2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TULP2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tulp2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TULP2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TULP2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tulp2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tulp2 (TUB like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TULP1 (TUB like protein 1)	HGNC	PhylomeDB
Homo sapiens (human):	CCDC154 (coiled-coil domain containing 154)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TULP2 (TUB like protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tulp2 (TUB like protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-220f10.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-220f10.4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	tub-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tulp2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,098,884 - 105,136,243 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	105,127,650 - 105,137,277 (+)	Ensembl				GRCr8
mRatBN7.2	1	95,962,496 - 95,999,775 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,962,496 - 96,000,628 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	101,347,924 - 101,384,996 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,820,601 - 109,857,672 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,110,994 - 103,148,064 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,474,334 - 101,511,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,474,334 - 101,511,412 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	102,553,246 - 102,590,399 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	95,955,336 - 95,993,534 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	90,218,419 - 90,255,261 (+)	NCBI		Celera
RGSC_v3.1	1	96,033,446 - 96,071,643 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methoxyethanol (EXP)

2-palmitoylglycerol (ISO)

4,4'-diaminodiphenylmethane (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

carbon nanotube (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP,ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

lead diacetate (ISO)

lead nitrate (EXP)

lead(0) (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

methotrexate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sodium lactate (ISO)

tamoxifen (ISO)

thiram (ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cytoplasm (IEA)

Molecular Function

protein-containing complex binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:20889716

Genomics

Comparative Map Data

Tulp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,098,884 - 105,136,243 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	105,127,650 - 105,137,277 (+)	Ensembl				GRCr8
mRatBN7.2	1	95,962,496 - 95,999,775 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,962,496 - 96,000,628 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	101,347,924 - 101,384,996 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,820,601 - 109,857,672 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,110,994 - 103,148,064 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,474,334 - 101,511,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,474,334 - 101,511,412 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	102,553,246 - 102,590,399 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	95,955,336 - 95,993,534 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	90,218,419 - 90,255,261 (+)	NCBI		Celera
RGSC_v3.1	1	96,033,446 - 96,071,643 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

TULP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	48,880,967 - 48,898,744 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	48,880,965 - 48,898,744 (-)	Ensembl			hg38	GRCh38
GRCh37	19	49,384,224 - 49,402,001 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,076,034 - 54,093,750 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	54,076,033 - 54,093,750	NCBI
Celera	19	46,251,586 - 46,269,352 (-)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,760,666 - 45,778,459 (-)	NCBI		HuRef
CHM1_1	19	49,386,090 - 49,403,863 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	51,875,830 - 51,893,605 (-)	NCBI		T2T-CHM13v2.0

Tulp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	45,131,450 - 45,173,070 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	45,131,301 - 45,173,056 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	45,482,026 - 45,523,646 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,481,877 - 45,523,632 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	52,769,076 - 52,777,973 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,385,986 - 45,390,422 (+)	NCBI		MGSCv36	mm8
Celera	7	40,970,209 - 40,979,101 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.33	NCBI

Tulp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,740,678 - 1,749,034 (+)	Ensembl
ChiLan1.0	NW_004955559	1,740,750 - 1,749,036 (+)	NCBI	ChiLan1.0	ChiLan1.0

TULP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,983,241 - 55,003,801 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	56,909,407 - 56,930,100 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	45,881,283 - 45,898,921 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	54,857,706 - 54,874,618 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	54,857,741 - 54,874,618 (+)	Ensembl			panPan2	panpan1.1

TULP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,476,531 - 107,484,764 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,476,955 - 107,484,765 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	106,998,986 - 107,007,392 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,001,134 - 108,009,540 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,002,711 - 108,009,538 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	107,668,739 - 107,676,748 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,314,964 - 107,323,361 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,150,581 - 108,158,985 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tulp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,297,131 - 21,305,665 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	2,914,878 - 2,923,175 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	2,915,251 - 2,923,783 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TULP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,175,890 - 54,186,889 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	54,176,629 - 54,185,498 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	50,142,039 - 50,151,806 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TULP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,115,794 - 42,133,390 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	21,999,669 - 22,017,085 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tulp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	5,085,565 - 5,094,661 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tulp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	153,989,672 - 154,027,070 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tulp2
448 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	135
Count of miRNA genes:	108
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000064245
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

RH137542

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	105,135,613 - 105,135,934 (+)	Marker Load Pipeline
mRatBN7.2	1	95,999,145 - 95,999,466 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	101,510,992 - 101,511,312	NCBI	Rnor6.0
Rnor_5.0	1	102,589,770 - 102,590,090	UniSTS	Rnor5.0
RGSC_v3.4	1	95,993,116 - 95,993,436	UniSTS	RGSC3.4
Celera	1	90,254,843 - 90,255,163	UniSTS
Cytogenetic Map	1	q22	UniSTS

RH127506

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	95,968,419 - 95,968,600 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	101,480,255 - 101,480,435	NCBI	Rnor6.0
Rnor_5.0	1	102,559,167 - 102,559,347	UniSTS	Rnor5.0
RGSC_v3.4	1	95,961,257 - 95,961,437	UniSTS	RGSC3.4
Celera	1	90,224,340 - 90,224,520	UniSTS
RH 3.4 Map	1	909.6	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

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Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	131	87	86	55	68	55	6	319	168	11	110	72	90	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC084696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064245 ⟹ ENSRNOP00000062682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,127,650 - 105,137,277 (+)	Ensembl
mRatBN7.2 Ensembl	1	95,962,496 - 96,000,628 (+)	Ensembl
Rnor_6.0 Ensembl	1	101,474,334 - 101,511,408 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085005 ⟹ ENSRNOP00000072107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,990,839 - 95,999,785 (+)	Ensembl
Rnor_6.0 Ensembl	1	101,502,987 - 101,511,412 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118962 ⟹ ENSRNOP00000082997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,127,650 - 105,136,238 (+)	Ensembl
mRatBN7.2 Ensembl	1	95,962,496 - 95,999,785 (+)	Ensembl

RefSeq Acc Id:

NM_001012168 ⟹ NP_001012168

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,098,967 - 105,136,032 (+)	NCBI
mRatBN7.2	1	95,962,496 - 95,999,564 (+)	NCBI
Rnor_6.0	1	101,474,334 - 101,511,410 (+)	NCBI
Rnor_5.0	1	102,553,246 - 102,590,399 (+)	NCBI
RGSC_v3.4	1	95,955,336 - 95,993,534 (+)	RGD
Celera	1	90,218,419 - 90,255,261 (+)	RGD

Sequence:

show sequence

CCACAGAGCAGTAGCACCCTGCAGAACAGTGTGGGTGCATCTGAAAAGCTGAGCTCCTGCATGT
CATGGGACTATCCTGAGCTGCTGCTATGCCTAACACACCTCCCCATGACTCCCTAGGTGTTGGG
AGCCCTTTCCTCCAGGAGAACGTACCACAGGCACATCTGCCCTCAGGGGCACACAGTGCCCTTG
TCACCATGAGCTATGTCGGAGATGGGAGTGGTGAGCGGGCCCCTCTACTGTCACCCAGAGGAGC
AGTATACACTCGGGGCAATGGGCCTGCGGTCCGCCATCTCTGCTGGCTCCCAGACAGCTCCGAT
TCAGATGTGGAGGAAGTGACCATGGAAGACATTCCTGTCATCTCCCGACCTCCCAAGACGCACC
TGGCAAACCGACGCAGGGGCTGGTTAGCCTCCCCAGGACCCGGGATCAGTGAAGAGGAAGAGGT
TGAACCCAAGGATGCCAGAGTTGAAGACAAGACACCCAGCCCAGACCCAGACCCTACAGAAAAC
TCTGATAGAGTTCATGGAGACTCGGCATCCTGCAATATGGAGGAAAACACAGCCAAAAAGAATA
TAGAAACAGCCTCTGGCATTGGGGATGAAGACCCGGAGAAGAAAGAGGCCACAGAGTCTACAGA
GACAAACAATGCCCTAGTGGCATCCAAGGTCTTGCAAGGAGATGGTGACACCAGTAACCACAGT
GCTTGGAACATGACCTGCCCCATGCCTCGCACTCCAGGTCCTCGGCTCGGGGAGGACATGGAAG
CTTACGTGTTGCTCCCTGCACCCCGAGAACACATGGTGCAGTGCCGCATCGTCCGAAACAAGCA
TGGAGTGGACAAGGGCATGTTCCCTTCCTACTACCTCTACCTGGAGGCAGAGGATGGTGTAGCA
GTACGCTCCAGCCCTTTGGGGCATTTCCTTCTGGCTGGGCGGAAAAGGAAACGAAGCAAAACTT
CAAATTACCTCATCTCCCTGGACCCCAAAGACATGTCTCGCAATGGGAACAACTTTGTAGGCAA
AGTTAGATCTAATGTCTTGGGCACGAAATTCACCATCTTTGATAATGGGGTGAACCCTGAGCGT
AACTACTGGATTCCAGACAGTGCCCGGATCAGAGAGGAGTTGGGAGTTGTATGTTATGAGACCA
ATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACCGTGATCCTCCCAGGAATGGACAGCCGGAA
GCAGAGGATGAAAGTACAACCACAAAATGATCAGGATTCAATACTGAGTCGCGTACAGAAAGGC
GCTAGACATGGGCTGCTCCTACTGCAGAACAAGGCCCCATCGTGGAGCGACGAAAGCGGCGCAT
ACGTACTCAATTTTCATGGTCGCGTCACGCGGGCTTCTGTCAAGAACTTCCAGATAGTGCACCC
GGATGAACCGGACCACCTGGTGCTCCAGTTTGGCCGTGTAGCACCAAACATATTCACGATGGAT
TTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCGCCATCTGCTTATCCAGTTTCGATGGGAAAC
TGGCGTGTGAGTAACTGAATAAAATACCATCCCTCACCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006229103 ⟹ XP_006229165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,608 - 105,136,243 (+)	NCBI
mRatBN7.2	1	95,991,156 - 95,999,775 (+)	NCBI
Rnor_6.0	1	101,502,976 - 101,511,621 (+)	NCBI
Rnor_5.0	1	102,553,246 - 102,590,399 (+)	NCBI

Sequence:

show sequence

CAATTCAGAACCCCCAGAACAAGGGATCTGCCTGCCCCAGTGGCCTGGGGGCATTACTCTGTTG
GACATGGACCGTGAGGGGCCTAGAGGGCCAAGAAGAGGAACGTCTCAAGAGAATGAACAGTGGA
AGAAAGAGACCTTGGAGGATGAATTCTCTGGTGTGAGGCTGCAGAAGCTGGAACAACAGCGACA
GCTATTTGAGAAGAAGCAGCGCCGGAAACGCCAGGAGCCCCTCATGGTTCAGGCCAATCCTGAT
GCTTCCCTGAGGCACCGGCGACCAAGGCGTGGGGAGGAGCGCTTCCAGAGTGACAGCAGCTGGG
GCCTTGGTGTTGGGAGCCCTTTCCTCCAGGAGAACGTACCACAGGCACATCTGCCCTCAGGGGC
ACACAGTGCCCTTGTCACCATGAGCTATGTCGGAGATGGGAGTGGTGAGCGGGCCCCTCTACTG
TCACCCAGAGGAGCAGTATACACTCGGGGCAATGGGCCTGCGGTCCGCCATCTCTGCTGGCTCC
CAGACAGCTCCGATTCAGATGTGGAGGAAGTGACCATGGAAGACATTCCTGTCATCTCCCGACC
TCCCAAGACGCACCTGGCAAACCGACGCAGGGGCTGGTTAGCCTCCCCAGGACCCGGGATCAGT
GAAGAGGAAGAGGTTGAACCCAAGGATGCCAGAGTTGAAGACAAGACACCCAGCCCAGACCCAG
ACCCTACAGAAAACTCTGATAGAGTTCATGGAGACTCGGCATCCTGCAATATGGAGGAAAACAC
AGCCAAAAAGAATATAGAAACAGCCTCTGGCATTGGGGATGAAGACCCGGAGAAGAAAGAGGCC
ACAGAGTCTACAGAGACAAACAATGCCCTAGTGGCATCCAAGGTCTTGCAAGGAGATGGTGACA
CCAGTAACCACAGTGCTTGGAACATGACCTGCCCCATGCCTCGCACTCCAGGTCCTCGGCTCGG
GGAGGACATGGAAGCTTACGTGTTGCTCCCTGCACCCCGAGAACACATGGTGCAGTGCCGCATC
GTCCGAAACAAGCATGGAGTGGACAAGGGCATGTTCCCTTCCTACTACCTCTACCTGGAGGCAG
AGGATGGTGTAGCAGTACGCTCCAGCCCTTTGGGGCATTTCCTTCTGGCTGGGCGGAAAAGGAA
ACGAAGCAAAACTTCAAATTACCTCATCTCCCTGGACCCCAAAGACATGTCTCGCAATGGGAAC
AACTTTGTAGGCAAAGTTAGATCTAATGTCTTGGGCACGAAATTCACCATCTTTGATAATGGGG
TGAACCCTGAGCGTAACTACTGGATTCCAGACAGTGCCCGGATCAGAGAGGAGTTGGGAGTTGT
ATGTTATGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACCGTGATCCTCCCAGGA
ATGGACAGCCGGAAGCAGAGGATGAAAGTACAACCACAAAATGATCAGGATTCAATACTGAGTC
GCGTACAGAAAGGCGCTAGACATGGGCTGCTCCTACTGCAGAACAAGGCCCCATCGTGGAGCGA
CGAAAGCGGCGCATACGTACTCAATTTTCATGGTCGCGTCACGCGGGCTTCTGTCAAGAACTTC
CAGATAGTGCACCCGGATGAACCGGACCACCTGGTGCTCCAGTTTGGCCGTGTAGCACCAAACA
TATTCACGATGGATTTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCGCCATCTGCTTATCCAG
TTTCGATGGGAAACTGGCGTTTTTTTGATACTCAGTCTGGTCTCCAACAACTATGTAGCTGAGG
CTTGCCTTGAACCTCCGATCCTCCTGCTCTCTGAAGTGCTGGGATGACAAGCATGCACCTTTGT
GCCTGGCCTTGTCTTTTAACAATAAATCTTTTGATTAATTTTTTTA

hide sequence

RefSeq Acc Id:

XM_006229106 ⟹ XP_006229168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,752 - 105,136,032 (+)	NCBI
mRatBN7.2	1	95,991,211 - 95,999,768 (+)	NCBI
Rnor_6.0	1	101,503,052 - 101,511,410 (+)	NCBI
Rnor_5.0	1	102,553,246 - 102,590,399 (+)	NCBI

Sequence:

show sequence

GAGGGGCCTAGAGGGCCAAGAAGAGGGCAAGTGCCTGTGGGAATTCCCTTCTGAGAAAGAGTCC
GGATAAGTTTAGAGTTTCAGCTTCGCTGCTAGGCCAACGTCTCAAGAGAATGAACAGTGGAAGA
AAGAGACCTTGGAGGATGAATTCTCTGGTGTGAGGCTGCAGAAGCTGGAACAACAGCGACAGCT
ATTTGAGAAGAAGCAGCGCCGGAAACGCCAGGAGCCCCTCATGGTTCAGGCCAATCCTGATGCT
TCCCTGAGGCACCGGCGACCAAGGCGTGGGGAGGAGCGCTTCCAGAGTGACAGCAGCTGGGGCC
TTGGTGTTGGGAGCCCTTTCCTCCAGGAGAACGTACCACAGGCACATCTGCCCTCAGGGGCACA
CAGTGCCCTTGTCACCATGAGCTATGTCGGAGATGGGAGTGGTGAGCGGGCCCCTCTACTGTCA
CCCAGAGGAGCAGTATACACTCGGGGCAATGGGCCTGCGGTCCGCCATCTCTGCTGGCTCCCAG
ACAGCTCCGATTCAGATGTGGAGGAAGTGACCATGGAAGACATTCCTGTCATCTCCCGACCTCC
CAAGACGCACCTGGCAAACCGACGCAGGGGCTGGTTAGCCTCCCCAGGACCCGGGATCAGTGAA
GAGGAAGAGGTTGAACCCAAGGATGCCAGAGTTGAAGACAAGACACCCAGCCCAGACCCAGACC
CTACAGAAAACTCTGATAGAGTTCATGGAGACTCGGCATCCTGCAATATGGAGGAAAACACAGC
CAAAAAGAATATAGAAACAGCCTCTGGCATTGGGGATGAAGACCCGGAGAAGAAAGAGGCCACA
GAGTCTACAGAGACAAACAATGCCCTAGTGGCATCCAAGGTCTTGCAAGGAGATGGTGACACCA
GTAACCACAGTGCTTGGAACATGACCTGCCCCATGCCTCGCACTCCAGGTCCTCGGCTCGGGGA
GGACATGGAAGCTTACGTGTTGCTCCCTGCACCCCGAGAACACATGGTGCAGTGCCGCATCGTC
CGAAACAAGCATGGAGTGGACAAGGGCATGTTCCCTTCCTACTACCTCTACCTGGAGGCAGAGG
ATGGTGTAGCAGTACGCTCCAGCCCTTTGGGGCATTTCCTTCTGGCTGGGCGGAAAAGGAAACG
AAGCAAAACTTCAAATTACCTCATCTCCCTGGACCCCAAAGACATGTCTCGCAATGGGAACAAC
TTTGTAGGCAAAGTTAGATCTAATGTCTTGGGCACGAAATTCACCATCTTTGATAATGGGGTGA
ACCCTGAGCGTAACTACTGGATTCCAGACAGTGCCCGGATCAGAGAGGAGTTGGGAGTTGTATG
TTATGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACCGTGATCCTCCCAGGAATG
GACAGCCGGAAGCAGAGGATGAAAGTACAACCACAAAATGATCAGGATTCAATACTGAGTCGCG
TACAGAAAGGCGCTAGACATGGGCTGCTCCTACTGCAGAACAAGGCCCCATCGTGGAGCGACGA
AAGCGGCGCATACGTACTCAATTTTCATGGTCGCGTCACGCGGGCTTCTGTCAAGAACTTCCAG
ATAGTGCACCCGGATGAACCGGACCACCTGGTGCTCCAGTTTGGCCGTGTAGCACCAAACATAT
TCACGATGGATTTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCGCCATCTGCTTATCCAGTTT
CGATGGGAAACTGGCGTGTGAGTAACTGAATAAAATACCATCCCTCACCAA

hide sequence

RefSeq Acc Id:

XM_008759398 ⟹ XP_008757620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,129,933 - 105,136,032 (+)	NCBI
mRatBN7.2	1	95,993,471 - 95,999,768 (+)	NCBI
Rnor_6.0	1	101,504,916 - 101,511,410 (+)	NCBI

Sequence:

show sequence

GTGGAGCTCAGTGAGCCCCAGGGCGGGAACTTGGCGGACGGTGCTGGCTGTAGGAGAGTGTTCT
AATGAGCATAAGTGGTGGAGAACCTATGAGGTCCTCTTTGGATAGGGGTGGGGCTGTGGGTCGG
GCCTAAAACGTATCAGGGCGGGGCCTAATGGATTCATAGGGGTGGAGCTTAGGACCAGGAGTAG
GTTAAGGGAGGGGCTGTTAGACTGGCTTATAATATTTCAGTGTTGGGGAGGACCCTAATGCATC
GTGGTGGTAGTGGGGCACGCGGTAGAGCATAGGGGCGTGGCTTACTTGAGTGTGGGCCTTTATG
AGGGAACATAGGGGGAGCCTTGTGGATCCTTCTGCAGAGGATTGATTGGGTTGTGGGTTTCTTA
AAAGCTATTGAGAACATCCAGTCCTGTGGAGTACCCAGGTGTTGGGAGCCCTTTCCTCCAGGAG
AACGTACCACAGGCACATCTGCCCTCAGGGGCACACAGTGCCCTTGTCACCATGAGCTATGTCG
GAGATGGGAGTGGTGAGCGGGCCCCTCTACTGTCACCCAGAGGAGCAGTATACACTCGGGGCAA
TGGGCCTGCGGTCCGCCATCTCTGCTGGCTCCCAGACAGCTCCGATTCAGATGTGGAGGAAGTG
ACCATGGAAGACATTCCTGTCATCTCCCGACCTCCCAAGACGCACCTGGCAAACCGACGCAGGG
GCTGGTTAGCCTCCCCAGGACCCGGGATCAGTGAAGAGGAAGAGGTTGAACCCAAGGATGCCAG
AGTTGAAGACAAGACACCCAGCCCAGACCCAGACCCTACAGAAAACTCTGATAGAGTTCATGGA
GACTCGGCATCCTGCAATATGGAGGAAAACACAGCCAAAAAGAATATAGAAACAGCCTCTGGCA
TTGGGGATGAAGACCCGGAGAAGAAAGAGGCCACAGAGTCTACAGAGACAAACAATGCCCTAGT
GGCATCCAAGGTCTTGCAAGGAGATGGTGACACCAGTAACCACAGTGCTTGGAACATGACCTGC
CCCATGCCTCGCACTCCAGGTCCTCGGCTCGGGGAGGACATGGAAGCTTACGTGTTGCTCCCTG
CACCCCGAGAACACATGGTGCAGTGCCGCATCGTCCGAAACAAGCATGGAGTGGACAAGGGCAT
GTTCCCTTCCTACTACCTCTACCTGGAGGCAGAGGATGGTGTAGCAGTACGCTCCAGCCCTTTG
GGGCATTTCCTTCTGGCTGGGCGGAAAAGGAAACGAAGCAAAACTTCAAATTACCTCATCTCCC
TGGACCCCAAAGACATGTCTCGCAATGGGAACAACTTTGTAGGCAAAGTTAGATCTAATGTCTT
GGGCACGAAATTCACCATCTTTGATAATGGGGTGAACCCTGAGCGTAACTACTGGATTCCAGAC
AGTGCCCGGATCAGAGAGGAGTTGGGAGTTGTATGTTATGAGACCAATGTCTTGGGATTCAGGG
GGCCTCGGAAAATGACCGTGATCCTCCCAGGAATGGACAGCCGGAAGCAGAGGATGAAAGTACA
ACCACAAAATGATCAGGATTCAATACTGAGTCGCGTACAGAAAGGCGCTAGACATGGGCTGCTC
CTACTGCAGAACAAGGCCCCATCGTGGAGCGACGAAAGCGGCGCATACGTACTCAATTTTCATG
GTCGCGTCACGCGGGCTTCTGTCAAGAACTTCCAGATAGTGCACCCGGATGAACCGGACCACCT
GGTGCTCCAGTTTGGCCGTGTAGCACCAAACATATTCACGATGGATTTCCGATATCCTCTTTGC
CCGCTCCAAGCCTTCGCCATCTGCTTATCCAGTTTCGATGGGAAACTGGCGTGTGAGTAACTGA
ATAAAATACCATCCCTCACCAA

hide sequence

RefSeq Acc Id:

XM_017589366 ⟹ XP_017444855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,128,089 - 105,136,032 (+)	NCBI
mRatBN7.2	1	95,991,639 - 95,999,768 (+)	NCBI
Rnor_6.0	1	101,503,468 - 101,511,410 (+)	NCBI

Sequence:

show sequence

AACGTCTCAAGAGAATGAACAGTGGAAGAAAGAGACCTTGGAGGATGAATTCTCTGGTGTGAGG
CTGCAGAAGCTGGAACAACAGGTGTTGGGAGCCCTTTCCTCCAGGAGAACGTACCACAGGCACA
TCTGCCCTCAGGGGCACACAGTGCCCTTGTCACCATGAGCTATGTCGGAGATGGGAGTGGTGAG
CGGGCCCCTCTACTGTCACCCAGAGGAGCAGTATACACTCGGGGCAATGGGCCTGCGGTCCGCC
ATCTCTGCTGGCTCCCAGACAGCTCCGATTCAGATGTGGAGGAAGTGACCATGGAAGACATTCC
TGTCATCTCCCGACCTCCCAAGACGCACCTGGCAAACCGACGCAGGGGCTGGTTAGCCTCCCCA
GGACCCGGGATCAGTGAAGAGGAAGAGGTTGAACCCAAGGATGCCAGAGTTGAAGACAAGACAC
CCAGCCCAGACCCAGACCCTACAGAAAACTCTGATAGAGTTCATGGAGACTCGGCATCCTGCAA
TATGGAGGAAAACACAGCCAAAAAGAATATAGAAACAGCCTCTGGCATTGGGGATGAAGACCCG
GAGAAGAAAGAGGCCACAGAGTCTACAGAGACAAACAATGCCCTAGTGGCATCCAAGGTCTTGC
AAGGAGATGGTGACACCAGTAACCACAGTGCTTGGAACATGACCTGCCCCATGCCTCGCACTCC
AGGTCCTCGGCTCGGGGAGGACATGGAAGCTTACGTGTTGCTCCCTGCACCCCGAGAACACATG
GTGCAGTGCCGCATCGTCCGAAACAAGCATGGAGTGGACAAGGGCATGTTCCCTTCCTACTACC
TCTACCTGGAGGCAGAGGATGGTGTAGCAGTACGCTCCAGCCCTTTGGGGCATTTCCTTCTGGC
TGGGCGGAAAAGGAAACGAAGCAAAACTTCAAATTACCTCATCTCCCTGGACCCCAAAGACATG
TCTCGCAATGGGAACAACTTTGTAGGCAAAGTTAGATCTAATGTCTTGGGCACGAAATTCACCA
TCTTTGATAATGGGGTGAACCCTGAGCGTAACTACTGGATTCCAGACAGTGCCCGGATCAGAGA
GGAGTTGGGAGTTGTATGTTATGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACC
GTGATCCTCCCAGGAATGGACAGCCGGAAGCAGAGGATGAAAGTACAACCACAAAATGATCAGG
ATTCAATACTGAGTCGCGTACAGAAAGGCGCTAGACATGGGCTGCTCCTACTGCAGAACAAGGC
CCCATCGTGGAGCGACGAAAGCGGCGCATACGTACTCAATTTTCATGGTCGCGTCACGCGGGCT
TCTGTCAAGAACTTCCAGATAGTGCACCCGGATGAACCGGACCACCTGGTGCTCCAGTTTGGCC
GTGTAGCACCAAACATATTCACGATGGATTTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCGC
CATCTGCTTATCCAGTTTCGATGGGAAACTGGCGTGTGAGTAACTGAATAAAATACCATCCCTC
ACCAA

hide sequence

RefSeq Acc Id:

XM_063266742 ⟹ XP_063122812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,609 - 105,136,032 (+)	NCBI

RefSeq Acc Id:

XM_063266753 ⟹ XP_063122823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,610 - 105,136,243 (+)	NCBI

RefSeq Acc Id:

XM_063266764 ⟹ XP_063122834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,618 - 105,136,032 (+)	NCBI

RefSeq Acc Id:

XM_063266775 ⟹ XP_063122845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,128,095 - 105,136,243 (+)	NCBI

RefSeq Acc Id:

XM_063266786 ⟹ XP_063122856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,127,618 - 105,136,032 (+)	NCBI

RefSeq Acc Id:

XM_063266801 ⟹ XP_063122871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,098,884 - 105,136,032 (+)	NCBI

RefSeq Acc Id:

XM_063266811 ⟹ XP_063122881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,129,934 - 105,136,032 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012168	(Get FASTA)	NCBI Sequence Viewer
	NP_001425063	(Get FASTA)	NCBI Sequence Viewer
	NP_001425064	(Get FASTA)	NCBI Sequence Viewer
	NP_001425065	(Get FASTA)	NCBI Sequence Viewer
	NP_001425066	(Get FASTA)	NCBI Sequence Viewer
	NP_001425067	(Get FASTA)	NCBI Sequence Viewer
	NP_001425068	(Get FASTA)	NCBI Sequence Viewer
	NP_001425069	(Get FASTA)	NCBI Sequence Viewer
	NP_001425070	(Get FASTA)	NCBI Sequence Viewer
	NP_001425071	(Get FASTA)	NCBI Sequence Viewer
	NP_001425072	(Get FASTA)	NCBI Sequence Viewer
	NP_001425073	(Get FASTA)	NCBI Sequence Viewer
	NP_001425074	(Get FASTA)	NCBI Sequence Viewer
	NP_001425075	(Get FASTA)	NCBI Sequence Viewer
	XP_006229165	(Get FASTA)	NCBI Sequence Viewer
	XP_006229168	(Get FASTA)	NCBI Sequence Viewer
	XP_008757620	(Get FASTA)	NCBI Sequence Viewer
	XP_017444855	(Get FASTA)	NCBI Sequence Viewer
	XP_063122812	(Get FASTA)	NCBI Sequence Viewer
	XP_063122823	(Get FASTA)	NCBI Sequence Viewer
	XP_063122834	(Get FASTA)	NCBI Sequence Viewer
	XP_063122845	(Get FASTA)	NCBI Sequence Viewer
	XP_063122856	(Get FASTA)	NCBI Sequence Viewer
	XP_063122871	(Get FASTA)	NCBI Sequence Viewer
	XP_063122881	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH84696	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062682
	ENSRNOP00000062682.3
	ENSRNOP00000082997
	ENSRNOP00000082997.2

RefSeq Acc Id:

NP_001012168 ⟸ NM_001012168

- UniProtKB:

Q5XFX6 (UniProtKB/TrEMBL), A0A8I6G891 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPNTPPHDSLGVGSPFLQENVPQAHLPSGAHSALVTMSYVGDGSGERAPLLSPRGAVYTRGNGP
AVRHLCWLPDSSDSDVEEVTMEDIPVISRPPKTHLANRRRGWLASPGPGISEEEEVEPKDARVE
DKTPSPDPDPTENSDRVHGDSASCNMEENTAKKNIETASGIGDEDPEKKEATESTETNNALVAS
KVLQGDGDTSNHSAWNMTCPMPRTPGPRLGEDMEAYVLLPAPREHMVQCRIVRNKHGVDKGMFP
SYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSNYLISLDPKDMSRNGNNFVGKVRSNVLGT
KFTIFDNGVNPERNYWIPDSARIREELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQ
NDQDSILSRVQKGARHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVL
QFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLACE

hide sequence

RefSeq Acc Id:

XP_006229165 ⟸ XM_006229103

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDREGPRGPRRGTSQENEQWKKETLEDEFSGVRLQKLEQQRQLFEKKQRRKRQEPLMVQANPDA
SLRHRRPRRGEERFQSDSSWGLGVGSPFLQENVPQAHLPSGAHSALVTMSYVGDGSGERAPLLS
PRGAVYTRGNGPAVRHLCWLPDSSDSDVEEVTMEDIPVISRPPKTHLANRRRGWLASPGPGISE
EEEVEPKDARVEDKTPSPDPDPTENSDRVHGDSASCNMEENTAKKNIETASGIGDEDPEKKEAT
ESTETNNALVASKVLQGDGDTSNHSAWNMTCPMPRTPGPRLGEDMEAYVLLPAPREHMVQCRIV
RNKHGVDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSNYLISLDPKDMSRNGNN
FVGKVRSNVLGTKFTIFDNGVNPERNYWIPDSARIREELGVVCYETNVLGFRGPRKMTVILPGM
DSRKQRMKVQPQNDQDSILSRVQKGARHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQ
IVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLAFF

hide sequence

RefSeq Acc Id:

XP_006229168 ⟸ XM_006229106

- Peptide Label:

isoform X7

- Sequence:

show sequence

MVQANPDASLRHRRPRRGEERFQSDSSWGLGVGSPFLQENVPQAHLPSGAHSALVTMSYVGDGS
GERAPLLSPRGAVYTRGNGPAVRHLCWLPDSSDSDVEEVTMEDIPVISRPPKTHLANRRRGWLA
SPGPGISEEEEVEPKDARVEDKTPSPDPDPTENSDRVHGDSASCNMEENTAKKNIETASGIGDE
DPEKKEATESTETNNALVASKVLQGDGDTSNHSAWNMTCPMPRTPGPRLGEDMEAYVLLPAPRE
HMVQCRIVRNKHGVDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSNYLISLDPK
DMSRNGNNFVGKVRSNVLGTKFTIFDNGVNPERNYWIPDSARIREELGVVCYETNVLGFRGPRK
MTVILPGMDSRKQRMKVQPQNDQDSILSRVQKGARHGLLLLQNKAPSWSDESGAYVLNFHGRVT
RASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLACE

hide sequence

RefSeq Acc Id:

XP_008757620 ⟸ XM_008759398

- Peptide Label:

isoform X9

- Sequence:

show sequence

MSYVGDGSGERAPLLSPRGAVYTRGNGPAVRHLCWLPDSSDSDVEEVTMEDIPVISRPPKTHLA
NRRRGWLASPGPGISEEEEVEPKDARVEDKTPSPDPDPTENSDRVHGDSASCNMEENTAKKNIE
TASGIGDEDPEKKEATESTETNNALVASKVLQGDGDTSNHSAWNMTCPMPRTPGPRLGEDMEAY
VLLPAPREHMVQCRIVRNKHGVDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSN
YLISLDPKDMSRNGNNFVGKVRSNVLGTKFTIFDNGVNPERNYWIPDSARIREELGVVCYETNV
LGFRGPRKMTVILPGMDSRKQRMKVQPQNDQDSILSRVQKGARHGLLLLQNKAPSWSDESGAYV
LNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA
CE

hide sequence

RefSeq Acc Id:	XP_017444855 ⟸ XM_017589366
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G891 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYVGDGSGERAPLLSPRGAVYTRGNGPAVRHLCWLPDSSDSDVEEVTMEDIPVISRPPKTHLA NRRRGWLASPGPGISEEEEVEPKDARVEDKTPSPDPDPTENSDRVHGDSASCNMEENTAKKNIE TASGIGDEDPEKKEATESTETNNALVASKVLQGDGDTSNHSAWNMTCPMPRTPGPRLGEDMEAY VLLPAPREHMVQCRIVRNKHGVDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSN YLISLDPKDMSRNGNNFVGKVRSNVLGTKFTIFDNGVNPERNYWIPDSARIREELGVVCYETNV LGFRGPRKMTVILPGMDSRKQRMKVQPQNDQDSILSRVQKGARHGLLLLQNKAPSWSDESGAYV LNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA CE hide sequence

Ensembl Acc Id:

ENSRNOP00000072107 ⟸ ENSRNOT00000085005

Ensembl Acc Id:

ENSRNOP00000062682 ⟸ ENSRNOT00000064245

Ensembl Acc Id:

ENSRNOP00000082997 ⟸ ENSRNOT00000118962

RefSeq Acc Id:	XP_063122871 ⟸ XM_063266801
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063122812 ⟸ XM_063266742
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063122823 ⟸ XM_063266753
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063122834 ⟸ XM_063266764
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063122856 ⟸ XM_063266786
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063122845 ⟸ XM_063266775
- Peptide Label:	isoform X5
- UniProtKB:	A6JB47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122881 ⟸ XM_063266811
- Peptide Label:	isoform X10

Protein Domains

Tubby C-terminal Tubby N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K250-F1-model_v2	AlphaFold	A0A0G2K250	1-555	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690062

Promoter ID:

EPDNEW_R568

Type:

multiple initiation site

Name:

Tulp2_1

Description:

tubby-like protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	101,503,028 - 101,503,088	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310551	AgrOrtholog
BioCyc Gene	G2FUF-59680	BioCyc
Ensembl Genes	ENSRNOG00000020927	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064245	ENTREZGENE
	ENSRNOT00000064245.4	UniProtKB/TrEMBL
	ENSRNOT00000118962	ENTREZGENE
	ENSRNOT00000118962.2	UniProtKB/TrEMBL
Gene3D-CATH	Tubby Protein, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7115051	IMAGE-MGC_LOAD
InterPro	Tubby_C	UniProtKB/TrEMBL
	Tubby_C-like	UniProtKB/TrEMBL
	Tubby_C_CS	UniProtKB/TrEMBL
	Tubby_N	UniProtKB/TrEMBL
KEGG Report	rno:361576	UniProtKB/TrEMBL
MGC_CLONE	MGC:105856	IMAGE-MGC_LOAD
NCBI Gene	361576	ENTREZGENE
PANTHER	TUBBY-RELATED	UniProtKB/TrEMBL
	TUBBY-RELATED PROTEIN 2	UniProtKB/TrEMBL
Pfam	Tub	UniProtKB/TrEMBL
	Tub_N	UniProtKB/TrEMBL
PhenoGen	Tulp2	PhenoGen
PRINTS	SUPERTUBBY	UniProtKB/TrEMBL
PROSITE	TUB_1	UniProtKB/TrEMBL
	TUB_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020927	RatGTEx
Superfamily-SCOP	Tubby_C	UniProtKB/TrEMBL
UniProt	A0A0G2K250	ENTREZGENE
	A0A8I6G891	ENTREZGENE, UniProtKB/TrEMBL
	A6JB47	ENTREZGENE, UniProtKB/TrEMBL
	F7ES09	ENTREZGENE, UniProtKB/TrEMBL
	Q5XFX6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Tulp2	TUB like protein 2	Tulp2	tubby-like protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Tulp2	tubby-like protein 2	Tulp2_predicted	tubby-like protein 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tulp2_predicted	tubby-like protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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