Ifi44 (interferon-induced protein 44) - Rat Genome Database

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Gene: Ifi44 (interferon-induced protein 44) Rattus norvegicus
Analyze
Symbol: Ifi44
Name: interferon-induced protein 44
RGD ID: 1310523
Description: Predicted to be involved in immune response. Predicted to act upstream of or within cellular response to virus and response to bacterium. Predicted to be located in cytoplasm. Orthologous to human IFI44 (interferon induced protein 44); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310969
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,286,050 - 243,303,869 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,286,052 - 243,306,877 (-)EnsemblGRCr8
mRatBN7.22240,626,058 - 240,643,879 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2240,626,066 - 240,643,844 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,425,005 - 248,442,792 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,312,027 - 246,329,814 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,179,510 - 241,197,300 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02256,897,765 - 256,915,591 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2256,897,772 - 256,915,569 (-)Ensemblrn6Rnor6.0
Rnor_5.02275,575,813 - 275,593,615 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,039,104 - 250,056,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2232,564,862 - 232,582,621 (-)NCBICelera
RGSC_v3.12250,053,708 - 250,081,761 (-)NCBI
Cytogenetic Map2q45NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
6alpha-methylprednisolone  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arotinoid acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
chloroprene  (ISO)
cholesterol  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cortisol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
deguelin  (ISO)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
dieldrin  (EXP)
dimethylarsinous acid  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
Genipin  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glyphosate  (ISO)
GSK-J4  (ISO)
hydroquinone  (ISO)
iohexol  (ISO)
iopamidol  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
pentachlorophenol  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (ISO)
prednisolone  (ISO)
propiconazole  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium aurothiomalate  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetraphene  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tofacitinib  (ISO)
topotecan  (EXP)
triclosan  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23012479  


Genomics

Comparative Map Data
Ifi44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,286,050 - 243,303,869 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,286,052 - 243,306,877 (-)EnsemblGRCr8
mRatBN7.22240,626,058 - 240,643,879 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2240,626,066 - 240,643,844 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,425,005 - 248,442,792 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,312,027 - 246,329,814 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,179,510 - 241,197,300 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02256,897,765 - 256,915,591 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2256,897,772 - 256,915,569 (-)Ensemblrn6Rnor6.0
Rnor_5.02275,575,813 - 275,593,615 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,039,104 - 250,056,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2232,564,862 - 232,582,621 (-)NCBICelera
RGSC_v3.12250,053,708 - 250,081,761 (-)NCBI
Cytogenetic Map2q45NCBI
IFI44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,649,789 - 78,664,078 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,647,078 - 78,664,412 (+)Ensemblhg38GRCh38
GRCh37179,115,474 - 79,129,763 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,888,104 - 78,902,345 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34178,827,536 - 78,841,778NCBI
Celera177,354,992 - 77,369,278 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef177,247,062 - 77,261,348 (+)NCBIHuRef
CHM1_1179,231,865 - 79,246,152 (+)NCBICHM1_1
T2T-CHM13v2.0178,488,644 - 78,502,933 (+)NCBIT2T-CHM13v2.0
Ifi44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,436,559 - 151,455,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,436,559 - 151,455,597 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383151,730,922 - 151,749,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3151,730,922 - 151,749,960 (-)Ensemblmm10GRCm38
MGSCv373151,393,886 - 151,412,923 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363151,668,310 - 151,687,235 (-)NCBIMGSCv36mm8
Celera3158,189,999 - 158,212,999 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map376.91NCBI
IFI44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,230,776 - 148,246,855 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11147,387,213 - 147,401,682 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,863,283 - 77,877,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,943,774 - 79,958,083 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,943,774 - 79,958,083 (+)EnsemblpanPan2panpan1.1
IFI44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,361,724 - 68,377,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,364,494 - 68,377,876 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha671,020,189 - 71,036,460 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0668,947,142 - 68,963,402 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl668,948,221 - 68,986,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,454,006 - 68,470,248 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,399,198 - 68,415,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0668,883,819 - 68,900,068 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ifi44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,870,875 - 89,885,122 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365715,381,254 - 5,395,470 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365715,381,312 - 5,395,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFI44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6134,633,615 - 134,650,203 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16134,634,679 - 134,649,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26124,790,060 - 124,806,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFI44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12054,539,512 - 54,554,787 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2054,539,392 - 54,554,785 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603362,977,917 - 62,998,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifi44
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1385,110,954 - 85,128,208 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ifi44
64 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:39
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000029990
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
BI274623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22240,626,113 - 240,626,253 (+)MAPPERmRatBN7.2
Rnor_6.02256,897,826 - 256,897,965NCBIRnor6.0
Rnor_5.02275,575,863 - 275,576,002UniSTSRnor5.0
RGSC_v3.42250,039,152 - 250,039,291UniSTSRGSC3.4
Celera2232,564,910 - 232,565,049UniSTS
RH 3.4 Map21652.52UniSTS
Cytogenetic Map2q45UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 65 159 89 88 57 92 57 6 352 190 11 138 81 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000029990   ⟹   ENSRNOP00000031735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,286,052 - 243,306,877 (-)Ensembl
mRatBN7.2 Ensembl2240,626,070 - 240,643,844 (-)Ensembl
Rnor_6.0 Ensembl2256,897,772 - 256,915,569 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084873   ⟹   ENSRNOP00000071211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,286,052 - 243,305,642 (-)Ensembl
mRatBN7.2 Ensembl2240,626,066 - 240,643,818 (-)Ensembl
Rnor_6.0 Ensembl2256,897,778 - 256,915,563 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134859   ⟹   ENSRNOP00000108205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,286,052 - 243,303,840 (-)Ensembl
RefSeq Acc Id: NM_001107729   ⟹   NP_001101199
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,286,052 - 243,303,840 (-)NCBI
mRatBN7.22240,626,066 - 240,643,856 (-)NCBI
Rnor_6.02256,897,778 - 256,915,563 (-)NCBI
Rnor_5.02275,575,813 - 275,593,615 (-)NCBI
RGSC_v3.42250,039,104 - 250,056,890 (-)RGD
Celera2232,564,862 - 232,582,621 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233497   ⟹   XP_006233559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,286,050 - 243,303,869 (-)NCBI
mRatBN7.22240,626,058 - 240,643,879 (-)NCBI
Rnor_6.02256,897,765 - 256,915,591 (-)NCBI
Rnor_5.02275,575,813 - 275,593,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233498   ⟹   XP_006233560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,286,050 - 243,303,869 (-)NCBI
mRatBN7.22240,626,058 - 240,643,871 (-)NCBI
Rnor_6.02256,897,765 - 256,915,591 (-)NCBI
Rnor_5.02275,575,813 - 275,593,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063281991   ⟹   XP_063138061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,287,447 - 243,303,863 (-)NCBI
RefSeq Acc Id: NP_001101199   ⟸   NM_001107729
- UniProtKB: D3ZAF8 (UniProtKB/TrEMBL),   A6HWI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233560   ⟸   XM_006233498
- Peptide Label: isoform X2
- UniProtKB: B0BNB7 (UniProtKB/TrEMBL),   D3ZAF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233559   ⟸   XM_006233497
- Peptide Label: isoform X2
- UniProtKB: B0BNB7 (UniProtKB/TrEMBL),   D3ZAF8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071211   ⟸   ENSRNOT00000084873
Ensembl Acc Id: ENSRNOP00000031735   ⟸   ENSRNOT00000029990
RefSeq Acc Id: XP_063138061   ⟸   XM_063281991
- Peptide Label: isoform X1
- UniProtKB: A6HWI9 (UniProtKB/TrEMBL),   D3ZAF8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108205   ⟸   ENSRNOT00000134859
Protein Domains
TLDc

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAF8-F1-model_v2 AlphaFold D3ZAF8 1-422 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691821
Promoter ID:EPDNEW_R2345
Type:multiple initiation site
Name:Ifi44_1
Description:interferon-induced protein 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02256,915,539 - 256,915,599EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310523 AgrOrtholog
BioCyc Gene G2FUF-50821 BioCyc
Ensembl Genes ENSRNOG00000022218 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029990 ENTREZGENE
  ENSRNOT00000029990.7 UniProtKB/TrEMBL
  ENSRNOT00000084873.3 UniProtKB/TrEMBL
  ENSRNOT00000134859 ENTREZGENE
  ENSRNOT00000134859.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7099624 IMAGE-MGC_LOAD
  IMAGE:7123360 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/TrEMBL
  TLDc UniProtKB/TrEMBL
KEGG Report rno:310969 UniProtKB/TrEMBL
MGC_CLONE MGC:187965 IMAGE-MGC_LOAD
  MGC:95044 IMAGE-MGC_LOAD
NCBI Gene 310969 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN 44 UniProtKB/TrEMBL
  PTHR14241:SF3 UniProtKB/TrEMBL
Pfam TLD UniProtKB/TrEMBL
PhenoGen Ifi44 PhenoGen
PROSITE TLDC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022218 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JZW5_RAT UniProtKB/TrEMBL
  A0ABK0LC73_RAT UniProtKB/TrEMBL
  A6HWI9 ENTREZGENE, UniProtKB/TrEMBL
  B0BNB7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAF8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ifi44  interferon-induced protein 44  Ifi44_predicted  interferon-induced protein 44 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ifi44_predicted  interferon-induced protein 44 (predicted)      Symbol and Name status set to approved 70820 APPROVED