Cfhr1 (complement factor H-related 1) - Rat Genome Database

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Gene: Cfhr1 (complement factor H-related 1) Rattus norvegicus
Analyze
Symbol: Cfhr1
Name: complement factor H-related 1
RGD ID: 1310510
Description: Predicted to enable complement component C3b binding activity and identical protein binding activity. Predicted to be involved in complement activation and cytolysis by host of symbiont cells. Predicted to be located in extracellular region. Predicted to be part of protein-containing complex. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in acute myeloid leukemia; age related macular degeneration 1; atypical hemolytic-uremic syndrome; and multiple myeloma. Orthologous to several human genes including CFHR1 (complement factor H related 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cfhl1; complement component factor h-like 1; complement factor H-related protein 1; LOC289057
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,946,298 - 53,961,282 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1353,919,927 - 53,961,303 (-)EnsemblGRCr8
mRatBN7.21351,395,583 - 51,410,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,369,211 - 51,410,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1353,980,575 - 53,995,565 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01355,268,495 - 55,283,485 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,535,312 - 52,550,292 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1353,294,894 - 53,309,874 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1353,520,861 - 53,535,845 (-)NCBILyon_Normotensive
Lyon_Hypertensive1353,488,499 - 53,503,479 (-)NCBILyon_Hypertensive
F344_StmMcwi1353,449,929 - 53,464,910 (-)NCBIF344_StmMcwi
Rnor_6.01356,862,666 - 56,877,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,836,994 - 56,877,650 (-)Ensemblrn6Rnor6.0
Rnor_5.01361,880,591 - 61,908,385 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41353,135,397 - 53,150,381 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1351,655,453 - 51,670,441 (-)NCBICelera
RGSC_v3.11353,129,611 - 53,164,476 (-)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. [Comparative plasma proteomic analysis of patients with multiple myeloma treated with bortezomib-based regimens]. Cumova J, etal., Klin Onkol. 2012;25(1):17-25.
2. Association of CFHR1 homozygous deletion with acute myelogenous leukemia in the European population. Fratelli M, etal., Leuk Lymphoma. 2016 May;57(5):1234-7. doi: 10.3109/10428194.2015.1082180. Epub 2016 Mar 2.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Complement factor H-related protein 1 deficiency and factor H antibodies in pediatric patients with atypical hemolytic uremic syndrome. Hofer J, etal., Clin J Am Soc Nephrol. 2013 Mar;8(3):407-15. doi: 10.2215/CJN.01260212. Epub 2012 Dec 14.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:22516433   PMID:23376485   PMID:23487775   PMID:23728178   PMID:31273197  


Genomics

Comparative Map Data
Cfhr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,946,298 - 53,961,282 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1353,919,927 - 53,961,303 (-)EnsemblGRCr8
mRatBN7.21351,395,583 - 51,410,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,369,211 - 51,410,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1353,980,575 - 53,995,565 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01355,268,495 - 55,283,485 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,535,312 - 52,550,292 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1353,294,894 - 53,309,874 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1353,520,861 - 53,535,845 (-)NCBILyon_Normotensive
Lyon_Hypertensive1353,488,499 - 53,503,479 (-)NCBILyon_Hypertensive
F344_StmMcwi1353,449,929 - 53,464,910 (-)NCBIF344_StmMcwi
Rnor_6.01356,862,666 - 56,877,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,836,994 - 56,877,650 (-)Ensemblrn6Rnor6.0
Rnor_5.01361,880,591 - 61,908,385 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41353,135,397 - 53,150,381 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1351,655,453 - 51,670,441 (-)NCBICelera
RGSC_v3.11353,129,611 - 53,164,476 (-)NCBI
Cytogenetic Map13q13NCBI
CFHR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381196,819,731 - 196,832,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1196,819,314 - 196,837,159 (+)Ensemblhg38GRCh38
GRCh371196,788,861 - 196,801,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,055,484 - 195,067,942 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341193,520,554 - 193,532,974NCBI
Celera1179,323,256 - 179,323,617 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
CHM1_11198,211,105 - 198,223,561 (+)NCBICHM1_1
Cfhr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391139,474,802 - 139,487,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1139,474,791 - 139,488,010 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381139,547,064 - 139,560,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1139,547,053 - 139,560,272 (-)Ensemblmm10GRCm38
MGSCv371141,443,641 - 141,456,799 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361141,363,475 - 141,376,633 (-)NCBIMGSCv36mm8
Celera1142,179,893 - 142,194,148 (-)NCBICelera
Cytogenetic Map1FNCBI
cM Map161.62NCBI

Variants

.
Variants in Cfhr1
210 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000017195
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH127572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21351,384,811 - 51,385,000 (+)MAPPERmRatBN7.2
mRatBN7.21351,384,811 - 51,384,999 (+)MAPPERmRatBN7.2
mRatBN7.21351,410,889 - 51,411,077 (+)MAPPERmRatBN7.2
Rnor_6.01356,877,969 - 56,878,156NCBIRnor6.0
Rnor_6.01356,851,895 - 56,852,082NCBIRnor6.0
Rnor_5.01361,870,072 - 61,870,259UniSTSRnor5.0
Rnor_5.01361,896,146 - 61,896,333UniSTSRnor5.0
RGSC_v3.41353,124,626 - 53,124,813UniSTSRGSC3.4
RGSC_v3.41353,150,700 - 53,150,887UniSTSRGSC3.4
Celera1351,670,760 - 51,670,947UniSTS
Celera1351,644,682 - 51,644,869UniSTS
Cytogenetic Map13q13UniSTS
RH127927  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21351,395,687 - 51,395,894 (+)MAPPERmRatBN7.2
Rnor_6.01356,862,771 - 56,862,977NCBIRnor6.0
Rnor_5.01361,880,948 - 61,881,154UniSTSRnor5.0
RGSC_v3.41353,135,502 - 53,135,708UniSTSRGSC3.4
Celera1351,655,558 - 51,655,764UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
6 8 12 45 85 83 57 19 57 5 140 49 27 21 33 26 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000017195   ⟹   ENSRNOP00000017195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,946,049 - 53,961,303 (-)Ensembl
mRatBN7.2 Ensembl1351,395,334 - 51,410,592 (-)Ensembl
Rnor_6.0 Ensembl1356,862,670 - 56,877,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079040   ⟹   ENSRNOP00000071663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,919,927 - 53,961,243 (-)Ensembl
mRatBN7.2 Ensembl1351,369,211 - 51,410,532 (-)Ensembl
Rnor_6.0 Ensembl1356,836,994 - 56,877,611 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105248   ⟹   ENSRNOP00000077196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,925,714 - 53,961,243 (-)Ensembl
mRatBN7.2 Ensembl1351,374,998 - 51,410,532 (-)Ensembl
RefSeq Acc Id: NM_001044227   ⟹   NP_001037692
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,946,298 - 53,961,282 (-)NCBI
mRatBN7.21351,395,583 - 51,410,571 (-)NCBI
Dahl_SR_JrHsd1353,294,894 - 53,309,874 (-)NCBI
Lyon_Normotensive1353,520,861 - 53,535,845 (-)NCBI
Lyon_Hypertensive1353,488,499 - 53,503,479 (-)NCBI
F344_StmMcwi1353,449,929 - 53,464,910 (-)NCBI
Rnor_6.01356,862,666 - 56,877,650 (-)NCBI
Rnor_5.01361,880,591 - 61,908,385 (-)NCBI
RGSC_v3.41353,135,397 - 53,150,381 (-)RGD
Celera1351,655,453 - 51,670,441 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001037692 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88173 (Get FASTA)   NCBI Sequence Viewer  
  AAP92607 (Get FASTA)   NCBI Sequence Viewer  
  AAP92613 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017195
  ENSRNOP00000017195.6
  ENSRNOP00000071663.1
  ENSRNOP00000077196.1
RefSeq Acc Id: NP_001037692   ⟸   NM_001044227
- Peptide Label: precursor
- UniProtKB: Q5I0M3 (UniProtKB/TrEMBL),   F7ESI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071663   ⟸   ENSRNOT00000079040
Ensembl Acc Id: ENSRNOP00000017195   ⟸   ENSRNOT00000017195
Ensembl Acc Id: ENSRNOP00000077196   ⟸   ENSRNOT00000105248
Protein Domains
Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0M3-F1-model_v2 AlphaFold Q5I0M3 1-274 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698867
Promoter ID:EPDNEW_R9392
Type:initiation region
Name:Cfhr1_1
Description:complement factor H-related 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01356,877,669 - 56,877,729EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310510 AgrOrtholog
BioCyc Gene G2FUF-18068 BioCyc
Ensembl Genes ENSRNOG00000042901 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017195 ENTREZGENE
  ENSRNOT00000017195.9 UniProtKB/TrEMBL
  ENSRNOT00000079040.3 UniProtKB/TrEMBL
  ENSRNOT00000105248.2 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7323337 IMAGE-MGC_LOAD
InterPro C2_domain_sf UniProtKB/TrEMBL
  ComplSys_Reg/VirEntry_Med UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
KEGG Report rno:289057 UniProtKB/TrEMBL
MGC_CLONE MGC:108802 IMAGE-MGC_LOAD
NCBI Gene 289057 ENTREZGENE
PANTHER COMPLEMENT FACTOR H-RELATED UniProtKB/TrEMBL
  COMPLEMENT FACTOR H-RELATED PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PhenoGen Cfhr1 PhenoGen
PROSITE SUSHI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042901 RatGTEx
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
UniProt A0A8I5XVW2_RAT UniProtKB/TrEMBL
  F7ESI5 ENTREZGENE, UniProtKB/TrEMBL
  Q5I0M3 ENTREZGENE, UniProtKB/TrEMBL
  Q7TP43_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-16 Cfhr1  complement factor H-related 1  Cfhl1  complement component factor h-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cfhl1  complement component factor h-like 1  Cfhl1_predicted  complement component factor h-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cfhl1_predicted  complement component factor h-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED