Shroom3 (shroom family member 3) - Rat Genome Database

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Gene: Shroom3 (shroom family member 3) Rattus norvegicus
Analyze
Symbol: Shroom3
Name: shroom family member 3
RGD ID: 1310470
Description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to act upstream of or within several processes, including columnar/cuboidal epithelial cell development; neural tube closure; and regulation of cell shape. Predicted to be located in apical part of cell and cytoskeleton. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Orthologous to human SHROOM3 (shroom family member 3); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305230; RGD1310470; Shrm; similar to PDZ domain actin binding protein Shroom
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,383,769 - 15,681,158 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,383,769 - 15,680,462 (-)EnsemblGRCr8
mRatBN7.21415,099,415 - 15,396,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,099,423 - 15,396,915 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1415,108,366 - 15,403,941 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,427,184 - 16,722,754 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,122,608 - 15,418,180 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01416,622,767 - 16,903,265 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,622,760 - 16,903,242 (-)Ensemblrn6Rnor6.0
Rnor_5.01416,547,964 - 16,817,192 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,658,357 - 16,954,651 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,501,250 - 14,791,213 (-)NCBICelera
RGSC_v3.11416,659,176 - 16,710,986 (-)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
Di-n-octyl phthalate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenvalerate  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
hexadecanoic acid  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methoxychlor  (EXP)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
orphenadrine  (EXP)
paracetamol  (EXP,ISO)
permethrin  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10589677   PMID:12477932   PMID:15037549   PMID:16249236   PMID:25273069  


Genomics

Comparative Map Data
Shroom3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,383,769 - 15,681,158 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,383,769 - 15,680,462 (-)EnsemblGRCr8
mRatBN7.21415,099,415 - 15,396,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,099,423 - 15,396,915 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1415,108,366 - 15,403,941 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,427,184 - 16,722,754 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,122,608 - 15,418,180 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01416,622,767 - 16,903,265 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,622,760 - 16,903,242 (-)Ensemblrn6Rnor6.0
Rnor_5.01416,547,964 - 16,817,192 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,658,357 - 16,954,651 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,501,250 - 14,791,213 (-)NCBICelera
RGSC_v3.11416,659,176 - 16,710,986 (-)NCBI
Cytogenetic Map14p22NCBI
SHROOM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,435,229 - 76,783,253 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,435,229 - 76,783,253 (+)Ensemblhg38GRCh38
GRCh37477,356,382 - 77,704,406 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,575,277 - 77,923,430 (+)NCBIBuild 36Build 36hg18NCBI36
Celera474,657,026 - 75,005,707 (+)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef473,108,515 - 73,456,416 (+)NCBIHuRef
CHM1_1477,332,743 - 77,680,889 (+)NCBICHM1_1
T2T-CHM13v2.0479,775,956 - 80,123,954 (+)NCBIT2T-CHM13v2.0
Shroom3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,831,294 - 93,113,618 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,831,294 - 93,113,177 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38592,683,435 - 92,965,759 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,683,435 - 92,965,318 (+)Ensemblmm10GRCm38
MGSCv37593,112,461 - 93,394,785 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36593,758,639 - 94,040,158 (+)NCBIMGSCv36mm8
Celera590,826,109 - 91,115,823 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map547.29NCBI
Shroom3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554331,358,444 - 1,422,498 (+)Ensembl
ChiLan1.0NW_0049554331,135,589 - 1,423,449 (+)NCBIChiLan1.0ChiLan1.0
SHROOM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2353,285,564 - 53,644,075 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1453,478,142 - 53,836,023 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0447,420,351 - 47,767,325 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1453,256,674 - 53,607,120 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,260,739 - 53,606,976 (-)EnsemblpanPan2panpan1.1
SHROOM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,218,513 - 1,392,014 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,271,392 - 1,391,798 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3240,494,053 - 40,614,343 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0321,295,876 - 1,415,834 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl321,295,538 - 1,415,778 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1321,293,808 - 1,413,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0321,292,672 - 1,369,119 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03238,806,933 - 38,927,333 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Shroom3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,803,664 - 11,097,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936676409,926 - 703,839 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936676533,654 - 703,549 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHROOM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1872,097,561 - 72,443,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,297,056 - 76,642,486 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SHROOM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1725,185,130 - 25,279,765 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl725,215,232 - 25,283,214 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660373,433,156 - 3,634,524 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shroom3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,187,756 - 14,394,834 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475714,187,911 - 14,524,999 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Shroom3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1115,718,494 - 5,785,073 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Shroom3
2914 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:90
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000003001
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat

Markers in Region
D14Got132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,151,468 - 15,151,734 (+)MAPPERmRatBN7.2
Rnor_6.01416,674,087 - 16,674,352NCBIRnor6.0
Rnor_5.01416,599,284 - 16,599,549UniSTSRnor5.0
RGSC_v3.41416,711,387 - 16,711,652UniSTSRGSC3.4
Celera1414,553,193 - 14,553,457UniSTS
Cytogenetic Map14p22UniSTS
RH128692  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,099,506 - 15,099,726 (+)MAPPERmRatBN7.2
Rnor_6.01416,622,851 - 16,623,070NCBIRnor6.0
Rnor_5.01416,548,048 - 16,548,267UniSTSRnor5.0
RGSC_v3.41416,658,441 - 16,658,660UniSTSRGSC3.4
Celera1414,501,334 - 14,501,553UniSTS
RH 3.4 Map14176.6UniSTS
Cytogenetic Map14p22UniSTS
AU046317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,256,668 - 15,256,786 (+)MAPPERmRatBN7.2
Rnor_6.01416,781,299 - 16,781,416NCBIRnor6.0
Rnor_5.01416,700,741 - 16,700,858UniSTSRnor5.0
RGSC_v3.41416,821,430 - 16,821,547UniSTSRGSC3.4
Celera1414,656,301 - 14,656,418UniSTS
Cytogenetic Map14p22UniSTS
AU049074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,202,736 - 15,204,218 (+)MAPPERmRatBN7.2
Rnor_6.01416,725,902 - 16,727,383NCBIRnor6.0
Rnor_5.01416,648,463 - 16,649,944UniSTSRnor5.0
RGSC_v3.41416,765,835 - 16,767,316UniSTSRGSC3.4
Celera1414,603,193 - 14,604,674UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 31 59 6 295 131 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000003001   ⟹   ENSRNOP00000003001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,383,769 - 15,528,205 (-)Ensembl
mRatBN7.2 Ensembl1415,099,423 - 15,396,915 (-)Ensembl
Rnor_6.0 Ensembl1416,622,760 - 16,903,242 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115349   ⟹   ENSRNOP00000077271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,383,769 - 15,491,701 (-)Ensembl
mRatBN7.2 Ensembl1415,099,423 - 15,207,249 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128277   ⟹   ENSRNOP00000107290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,383,769 - 15,680,462 (-)Ensembl
RefSeq Acc Id: NM_001100889   ⟹   NP_001094359
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,383,769 - 15,680,263 (-)NCBI
mRatBN7.21415,099,423 - 15,395,942 (-)NCBI
Rnor_6.01416,622,767 - 16,902,267 (-)NCBI
Rnor_5.01416,547,964 - 16,817,192 (-)NCBI
RGSC_v3.41416,658,357 - 16,954,651 (-)RGD
Celera1414,501,250 - 14,791,213 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250723   ⟹   XP_006250785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,384,001 - 15,681,158 (-)NCBI
mRatBN7.21415,099,415 - 15,396,832 (-)NCBI
Rnor_6.01416,622,767 - 16,903,265 (-)NCBI
Rnor_5.01416,547,964 - 16,817,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091852   ⟹   XP_038947780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,384,001 - 15,415,011 (-)NCBI
mRatBN7.21415,099,415 - 15,130,743 (-)NCBI
RefSeq Acc Id: NP_001094359   ⟸   NM_001100889
- UniProtKB: A0A8I5XVY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250785   ⟸   XM_006250723
- Peptide Label: isoform X1
- UniProtKB: F1LP26 (UniProtKB/TrEMBL),   A6KK58 (UniProtKB/TrEMBL),   A0A8I5XVY8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003001   ⟸   ENSRNOT00000003001
RefSeq Acc Id: XP_038947780   ⟸   XM_039091852
- Peptide Label: isoform X2
- UniProtKB: A0A8I5XVY8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077271   ⟸   ENSRNOT00000115349
Ensembl Acc Id: ENSRNOP00000107290   ⟸   ENSRNOT00000128277
Protein Domains
ASD1   ASD2   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LP26-F1-model_v2 AlphaFold F1LP26 1-1987 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310470 AgrOrtholog
BioCyc Gene G2FUF-16278 BioCyc
Ensembl Genes ENSRNOG00000002208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003001 ENTREZGENE
  ENSRNOT00000003001.8 UniProtKB/TrEMBL
  ENSRNOT00000115349.2 UniProtKB/TrEMBL
  ENSRNOT00000128277 ENTREZGENE
  ENSRNOT00000128277.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  6.10.250.3120 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7368269 IMAGE-MGC_LOAD
InterPro ASD1 UniProtKB/TrEMBL
  ASD2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Shroom_fam UniProtKB/TrEMBL
MGC_CLONE MGC:109649 IMAGE-MGC_LOAD
NCBI Gene 305230 ENTREZGENE
PANTHER PTHR15012 UniProtKB/TrEMBL
  PTHR15012:SF33 UniProtKB/TrEMBL
Pfam ASD1 UniProtKB/TrEMBL
  ASD2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PhenoGen Shroom3 PhenoGen
PROSITE ASD1 UniProtKB/TrEMBL
  ASD2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002208 RatGTEx
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP PDZ UniProtKB/TrEMBL
UniProt A0A8I5XVY8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LXV9_RAT UniProtKB/TrEMBL
  A6KK58 ENTREZGENE, UniProtKB/TrEMBL
  F1LP26 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJL1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Shroom3  shroom family member 3  RGD1310470  similar to PDZ domain actin binding protein Shroom  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310470  similar to PDZ domain actin binding protein Shroom  RGD1310470_predicted  similar to PDZ domain actin binding protein Shroom (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310470_predicted  similar to PDZ domain actin binding protein Shroom (predicted)  LOC305230_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305230_predicted  similar to PDZ domain actin binding protein Shroom (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL