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Gene: Atg9a (autophagy related 9A) Rattus norvegicus

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Symbol:

Atg9a

Name:

autophagy related 9A

RGD ID:

1310450

Description:

Predicted to enable phospholipid scramblase activity. Involved in response to nutrient levels. Located in late endosome. Is active in synaptic vesicle. Orthologous to human ATG9A (autophagy related 9A); PARTICIPATES IN autophagy pathway; INTERACTS WITH (+)-schisandrin B; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

APG9-like 1; ATG9 autophagy related 9 homolog A; ATG9 autophagy related 9 homolog A (S. cerevisiae); autophagy-related 9A; autophagy-related 9A (yeast); autophagy-related protein 9A; LOC363254; MGC105908; RGD1310450; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATG9A (autophagy related 9A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atg9a (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atg9a (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATG9A (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATG9A (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atg9a (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATG9A (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATG9A (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atg9a (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Atg9a (autophagy related 9A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ATG9A (autophagy related 9A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atg9a (autophagy related 9A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atg9a (autophagy related 9A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atg9a (ATG9 autophagy related 9 homolog A (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ATG9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	ATG9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Atg9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atg-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atg9a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atg9a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,126,071 - 84,136,723 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,126,071 - 84,136,666 (-)	Ensembl				GRCr8
mRatBN7.2	9	76,677,403 - 76,688,050 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,677,404 - 76,687,986 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,121,980 - 85,132,633 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,250,871 - 90,261,524 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,637,084 - 88,647,737 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,382,800 - 82,393,429 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,382,800 - 82,393,382 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,152,061 - 82,162,660 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,463,655 - 74,474,286 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,247,853 - 74,258,401 (-)	NCBI		Celera
RGSC_v3.1	9	74,610,636 - 74,621,268 (-)	NCBI
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebrotendinous xanthomatosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

caffeine (ISO)

chloroquine (ISO)

cisplatin (ISO)

colistin (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dieldrin (ISO)

dioxygen (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

ivermectin (ISO)

leflunomide (EXP)

lycopene (ISO)

N-acetyl-L-cysteine (ISO)

nefazodone (EXP)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

selenium atom (ISO)

SKF-96365 hydrochloride (EXP)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome assembly (ISO,ISS)

autophagy (IEA,ISO)

bone morphogenesis (ISO,ISS)

innate immune response (ISO)

lipid transport (IEA)

mitophagy (IBA)

negative regulation of interferon-beta production (ISO)

piecemeal microautophagy of the nucleus (IBA)

plasma membrane phospholipid scrambling (IEA)

programmed necrotic cell death (ISO,ISS)

protein localization to Golgi apparatus (ISO)

protein localization to phagophore assembly site (IBA)

response to nutrient levels (IEP)

reticulophagy (IBA)

Cellular Component

autophagosome (IBA,ISO)

autophagosome membrane (IEA,ISO)

cytoplasm (ISO)

cytoplasmic vesicle (IEA)

endoplasmic reticulum membrane (IEA,ISO,ISS)

endosome (ISO)

Golgi apparatus (IEA,ISO,ISS)

Golgi membrane (ISO,ISS)

late endosome (IDA,ISO)

late endosome membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (ISO,ISS)

phagophore assembly site (IBA,ISO)

phagophore assembly site membrane (IEA)

recycling endosome (ISO)

recycling endosome membrane (IEA,ISO,ISS)

synaptic membrane (ISO)

synaptic vesicle (EXP,IDA)

trans-Golgi network (ISO,ISS)

Molecular Function

phospholipid scramblase activity (IBA,ISO,ISS)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

autophagy pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9.	Autophagy in the heart and liver during normal aging and calorie restriction.	Wohlgemuth SE, etal., Rejuvenation Res. 2007 Sep;10(3):281-92.
10.	Mammalian autophagy: core molecular machinery and signaling regulation.	Yang Z and Klionsky DJ, Curr Opin Cell Biol. 2010 Apr;22(2):124-31. Epub 2009 Dec 23.
11.	Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes.	Young AR, etal., J Cell Sci. 2006 Sep 15;119(Pt 18):3888-900. Epub 2006 Aug 29.

Additional References at PubMed

PMID:15489334	PMID:15755735	PMID:19926846	PMID:19946888	PMID:22081425	PMID:22456507	PMID:23093945	PMID:23402761	PMID:24670807

Genomics

Comparative Map Data

Atg9a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,126,071 - 84,136,723 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,126,071 - 84,136,666 (-)	Ensembl				GRCr8
mRatBN7.2	9	76,677,403 - 76,688,050 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,677,404 - 76,687,986 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,121,980 - 85,132,633 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,250,871 - 90,261,524 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,637,084 - 88,647,737 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,382,800 - 82,393,429 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,382,800 - 82,393,382 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,152,061 - 82,162,660 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,463,655 - 74,474,286 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,247,853 - 74,258,401 (-)	NCBI		Celera
RGSC_v3.1	9	74,610,636 - 74,621,268 (-)	NCBI
Cytogenetic Map	9	q33	NCBI

ATG9A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,219,380 - 219,229,636 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	219,219,380 - 219,229,717 (-)	Ensembl			hg38	GRCh38
GRCh37	2	220,084,102 - 220,094,358 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	219,792,346 - 219,802,605 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	219,909,606 - 219,919,835	NCBI
Celera	2	213,853,809 - 213,864,068 (-)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,937,399 - 211,947,519 (-)	NCBI		HuRef
CHM1_1	2	220,089,938 - 220,100,197 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	219,704,146 - 219,714,401 (-)	NCBI		T2T-CHM13v2.0

Atg9a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,157,509 - 75,168,654 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,157,504 - 75,168,840 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	75,180,861 - 75,192,010 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	75,180,860 - 75,192,196 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	75,177,440 - 75,188,497 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	75,064,012 - 75,075,343 (-)	NCBI		MGSCv36	mm8
Celera	1	75,671,723 - 75,682,810 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	38.62	NCBI

Atg9a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,206,065 - 14,213,729 (+)	Ensembl
ChiLan1.0	NW_004955453	14,203,798 - 14,214,760 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATG9A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,849,883 - 121,860,282 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,864,848 - 121,875,247 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,477,007 - 106,487,249 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	225,067,959 - 225,078,272 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	225,067,590 - 225,078,065 (-)	Ensembl			panPan2	panpan1.1

ATG9A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,768,287 - 25,777,529 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,768,275 - 25,890,811 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,594,184 - 26,603,430 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,783,514 - 25,792,755 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,783,514 - 25,792,506 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	25,687,927 - 25,697,172 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,623,048 - 25,632,281 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,643,892 - 25,653,138 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atg9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,293,177 - 175,302,830 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,635,836 - 1,645,815 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	1,635,958 - 1,645,600 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATG9A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,254,355 - 121,265,569 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	121,254,355 - 121,265,564 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	134,289,150 - 134,300,499 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATG9A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	105,123,039 - 105,133,057 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	105,124,412 - 105,131,409 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	94,263,211 - 94,273,258 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atg9a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,787,601 - 5,797,534 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624823	5,787,525 - 5,797,536 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atg9a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	148,540,005 - 148,550,701 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Atg9a
84 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	325
Count of miRNA genes:	187
Interacting mature miRNAs:	233
Transcripts:	ENSRNOT00000025740
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	82168823	86720295	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat

Markers in Region

D9Mco65

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	76,685,086 - 76,685,275 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,390,483 - 82,390,671	NCBI	Rnor6.0
Rnor_5.0	9	82,159,744 - 82,159,932	UniSTS	Rnor5.0
RGSC_v3.4	9	74,471,338 - 74,471,526	UniSTS	RGSC3.4
Celera	9	74,255,536 - 74,255,724	UniSTS
Cytogenetic Map	9	q33	UniSTS

BQ193984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	76,676,981 - 76,677,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,382,378 - 82,382,539	NCBI	Rnor6.0
Rnor_5.0	9	82,151,639 - 82,151,800	UniSTS	Rnor5.0
RGSC_v3.4	9	74,463,233 - 74,463,394	UniSTS	RGSC3.4
Celera	9	74,247,431 - 74,247,592	UniSTS
RH 3.4 Map	9	768.5	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025740 ⟹ ENSRNOP00000025740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,126,071 - 84,136,551 (-)	Ensembl
mRatBN7.2 Ensembl	9	76,677,404 - 76,687,986 (-)	Ensembl
Rnor_6.0 Ensembl	9	82,382,800 - 82,393,382 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111893 ⟹ ENSRNOP00000089389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,127,501 - 84,136,666 (-)	Ensembl
mRatBN7.2 Ensembl	9	76,678,833 - 76,687,986 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151583 ⟹ ENSRNOP00000105428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,126,500 - 84,136,666 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172309 ⟹ ENSRNOP00000104252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,126,071 - 84,136,666 (-)	Ensembl

RefSeq Acc Id:

NM_001014218 ⟹ NP_001014240

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,071 - 84,136,718 (-)	NCBI
mRatBN7.2	9	76,677,403 - 76,688,050 (-)	NCBI
Rnor_6.0	9	82,382,800 - 82,393,382 (-)	NCBI
Rnor_5.0	9	82,152,061 - 82,162,660 (-)	NCBI
RGSC_v3.4	9	74,463,655 - 74,474,286 (-)	RGD
Celera	9	74,247,853 - 74,258,401 (-)	RGD

Sequence:

show sequence

CTGGAATCGCCCGGGTCGCGGTTCCTGCGGTGACACGCGAGGCTGGTAACTGGAATCTCCAGAC
CCAGGCCCAAGCTGGCCAGGGGTGCCCACAGAGCCCCAAGTGAGCTCGCGATGCGTAACGGGGG
CAGGGGAGCGGCGGGCGGGCCGGGGGCGCGCAGCTAGAATGTTTTGATAGAGGGCGCGCGCGGC
CAGGGGAGCGCGCGTGCGCCGGGGCCGCGCGCCCGGTTGTCCGCTGTTGGGAGCCTAGCCCCCG
GCCTGGGGCCGGGCGACCCTGGGGCGCCTGTGCTCAGGTCTAAGTGCTAAGGGCTGGGATTGGG
GAGGCATCCCAGCCCACCAGGGATATCAGCTGTAGATCTGGCTCGACCCCTCCACCATCCACAG
ACACCCCTGAGCACAGGCCCTTCCTGGGGAGATCCATGGGCCCTGGGTCTACATTGACCAGCTG
TCCAACCAGGGCACCCAGGACTGACGTGGAGCAGAAACTGTCCATGGAGCTGGTTAACAAGGTG
GACAGGGGGCTGCCGTGATGGCACAGTTTGACACTGAATACCAGCGCCTAGAGGCCTCTTATAG
CGATTCACCCCCAGGGGAAGAGGACCTGTTGGTGCATGTGGCTGAGGGGAGCAAATCACCTTGG
CACCACATTGAAAACCTTGACCTCTTCTTCTCTCGAGTTTATAATCTACATCAGAAGAATGGGT
TCACATGTATGCTCATTGGAGAGATTTTTGAACTCATGCAGTTCCTCTTTGTGGTTGCCTTCAC
CACCTTCCTGGTTAGCTGTGTGGACTATGACATCCTATTTGCCAACAAGATGGTGAACCACAGT
CTGCATCCTACCGAGCCTGTCAAGGTCACTCTGCCAGATGCCTTTTTGCCTGCCCAAGTTTGCA
GTGCCAGGATTCAGGAAAACGGCTCCCTCATCACCATCCTGGTCATCGCTGGTGTCTTCTGGAT
CCACCGGCTTATCAAGTTTATCTATAACATTTGCTGCTATTGGGAGATCCACTCCTTCTACCTA
CATGCTCTGCGGATCCCAATGTCTGCCCTTCCGTATTGCACGTGGCAGGAAGTGCAGGCCCGGA
TTGTGCAGACCCAGAAAGAGCATCAGATCTGCATCCACAAGCGTGAGCTGACAGAGTTGGACAT
CTACCATCGCATCCTCCGTTTCCAGAACTACATGGTGGCACTGGTGAACAAATCCCTCTTGCCT
CTGCGCTTCCGTCTGCCCGGCCTCGGAGAGGTTGTCTTCTTCACCCGTGGCCTCAAGTACAACT
TTGAGCTCATCCTCTTCTGGGGACCCGGCTCTCTGTTTCTCAATGAATGGAGCCTCAAGGCCGA
GTACAAACGTGGAGGGCAACGGCTAGAGCTGGCCCAGCGTCTCAGCAACCGCATCCTGTGGATT
GGCATCGCCAACTTCCTGCTCTGTCCCCTCATCCTCATCTGGCAGATCCTCTATGCCTTCTTCA
GCTATGCCGAGGTGCTGAAGAGAGAGCCGGGAGCCCTGGGAGCGCGTTGCTGGTCACTCTATGG
CCGTTGCTACCTCCGCCACTTCAATGAGCTAGAACACGAGCTGCAGTCCCGCCTCAACCGAGGA
TACAAGCCCGCCTCCAAGTACATGAATTGCTTCTTGTCACCGCTACTGACTCTGCTGGCCAAGA
ATGGTGCCTTCTTCGCGGGCTCTATCCTGGCCGTGCTTATTGCTCTCACGATCTACGATGAAGA
TGTGTTGGCTGTGGAGCATGTCCTCACCACTGTCACCCTACTGGGAGTCACGGTGACTGTGTGC
AGGTCTTTCATCCCAGACCAGCACATGGTGTTCTGCCCTGAGCAGCTGCTCCGAGTGATCCTTG
CCCACATCCACTACATGCCTGACCACTGGCAGGGTAATGCCCACCGCTCGCAGACCCGGGACGA
GTTTGCCCAGCTCTTCCAGTACAAGGCAGTGTTCATCTTGGAGGAGTTGCTGAGTCCCATTGTT
ACACCCCTCATTCTCATCTTCTGCCTACGCCCACGGGCCCTGGAGATCATAGACTTCTTCCGAA
ACTTTACTGTGGAGGTCGTCGGTGTGGGGGACACCTGCTCCTTTGCGCAGATGGACGTTCGCCA
GCACGGTCATCCTCAGTGGCTGTCTGGAGGGCAGACTGAGGCCTCAGTGTACCAGCAAGCCGAG
GATGGGAAGACCGAGTTGTCACTCATGCACTTTGCCATCACCAATCCTGGCTGGCAGCCCCCTC
GTGAGAGCACAGCCTTCCTGGGCTTCCTCAAGGAGCAGGTGCAGCGAGATGGAGCGGCTGCTGG
CCTTGCCCAGGGTGGTCTGCTCCCAGAGAATGCCCTTTTCACATCCATCCAGTCCTTACAGTCT
GAGTCTGAGCCACTGAGCCTCATTGCAAATGTGGTAGCAGGCTCGTCCTGCCGAGGACCCCCAC
TGTCCAGAGACCTGCAGGGTTCCAGGCACAGGGCTGATGTTGCTTCTGCCCTTAGATCCTTCTC
CCCTCTACAGCCTGGACAGGCCCCTCAAGGCCGTGTTCCCAGTACCATGACAGGCTCTGGAGTG
GACGCCAGGACAGCCAGCTCCGGGAGCAGCGTGTGGGAAGGACAGCTGCAAAGCCTGGTGCTGT
CTGAATATGCGTCCACTGAGATGAGCCTTCATGCCCTCTATATGCACCAGCTCCACAAGCAGCA
GACCCAGGCTGAGCCCGAGCGGCATGTGTGGCACCGCCGGGAGAGTGATGAGAGTGGAGAGAGT
GCCCCTGAAGAGGGGGGAGAGGGTGCCCGGGCCCCCCAACCCATCCCACGCTCTGCCAGCTATC
CCTGTGCTACTCCCCGGCCTGGAGCACCTGAGACCACCGCCCTGCATGGGGGCTTCCAGAGGCG
CTACGGGGGCATCACAGATCCTGGCACAGTGCCCCGTGCTCCCTCTCACTTCTCCAGGCTGCCC
TTGGGAGGATGGGCAGAAGATGGGCAGCCAGCATCAAGACACCCAGAGCCGGTGCCAGAGGAGG
GCTCAGAGGATGAACTGCCCCCTCAAGTGCACAAGGTATAGACAAGGCAGAAGCTGGTTCCCCT
GCTCCGGGATGGAGGCAACAGCTGTCCTGCCATCTCTTCTGCCTGCCATGAGAGGGATTCTCTG
AGTGCCGTCTGGCCCCACGTGTGTGGTGTTTTGTGTGTTCCTGCCTGGCCAAGGGAGGTGCCAA
CGTTGGGCTTGCCATAGCCCAAGAATTTGAGGCCTAGGGACTAGGGGCATACACGAGTCTAGCC
TCGACCCCAGGACTCCCTTGGCTCAGAGTGGTGCTAGAAACTGGTCCCCAGCCCAGTCCCAGTA
CTGCCATCTTTGCATCCACCCCACAGAAGCTGCCAAGCAGAAGAACCTGTGCCAACTGTGGAGT
GGGAAGGCAGGGCCTGAACCCTCAATCCCTGCAACCTAGCCCCCCATCTGGAATAGCTGAGCAG
CTCAGGCTGCAGCCCTTACCTCCAGTCCTCACCCAGTGCTGCAGCCATCTGGCCACCCCGACCC
CCGCACATCACTGGCATGTGTGCGCTGCCTGCTCCCCTCAGTTCACTTGCCCCCCTTCTGTTTG
GCTTTTGCTTTTTGTTGGGGTGAGAGCCCTAGCTCCCAGCTCCCCTCACACTACCTTTTGACAC
TAAGACGGAAGGTTTCTAAGTTGCAGGAACAGGATGAAAATTCTTTACTACCCTCTTCAACTTT
TAGGATGGGCACTTGGGAGTGTGAGGCCTTCCTAGCTGCTTATAATATACTCCTATCACCCACA
CAGGGACTGACAGGGCAGGAATGTGACCTCAGTTATATATACATATATATCCCAGCAAGACAGC
TCTGCCCTGTATCCCTCACCAAAAGGAGGATGGAGGGATAATGGACTCACCCTAGCCTAGGGCT
TCGACATTGCATGCTGGGATTCAGCTCCTACCCTTCCCCCACACTCCCCCAGTTCTGCTCGGCT
GTGGAAGGTAAACTTATGCCGAAGGTGGCGGACTCTGCTGTCGCAGCCCACAGCAGACAGGGTG
GGAACCCTGTACAGCTTGATAACCCTTAATAAAGAAGGGAATTTGAACGGGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

NM_001393880 ⟹ NP_001380809

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,071 - 84,136,718 (-)	NCBI
mRatBN7.2	9	76,677,403 - 76,688,050 (-)	NCBI

RefSeq Acc Id:

NM_001393881 ⟹ NP_001380810

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,071 - 84,136,718 (-)	NCBI
mRatBN7.2	9	76,677,403 - 76,688,050 (-)	NCBI

RefSeq Acc Id:

XM_063267398 ⟹ XP_063123468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,438 (-)	NCBI

RefSeq Acc Id:

XM_063267399 ⟹ XP_063123469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,712 (-)	NCBI

RefSeq Acc Id:

XM_063267400 ⟹ XP_063123470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,723 (-)	NCBI

RefSeq Acc Id:

XM_063267401 ⟹ XP_063123471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,702 (-)	NCBI

RefSeq Acc Id:

XM_063267402 ⟹ XP_063123472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,439 (-)	NCBI

RefSeq Acc Id:

XM_063267403 ⟹ XP_063123473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,702 (-)	NCBI

RefSeq Acc Id:

XM_063267404 ⟹ XP_063123474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,702 (-)	NCBI

RefSeq Acc Id:

XM_063267405 ⟹ XP_063123475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,705 (-)	NCBI

RefSeq Acc Id:

XM_063267406 ⟹ XP_063123476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,710 (-)	NCBI

RefSeq Acc Id:

XM_063267407 ⟹ XP_063123477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,435 (-)	NCBI

RefSeq Acc Id:

XM_063267409 ⟹ XP_063123479

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,126,076 - 84,136,702 (-)	NCBI

RefSeq Acc Id:

XM_063267410 ⟹ XP_063123480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,130,118 - 84,136,451 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014240	(Get FASTA)	NCBI Sequence Viewer
	NP_001380809	(Get FASTA)	NCBI Sequence Viewer
	NP_001380810	(Get FASTA)	NCBI Sequence Viewer
	XP_063123468	(Get FASTA)	NCBI Sequence Viewer
	XP_063123469	(Get FASTA)	NCBI Sequence Viewer
	XP_063123470	(Get FASTA)	NCBI Sequence Viewer
	XP_063123471	(Get FASTA)	NCBI Sequence Viewer
	XP_063123472	(Get FASTA)	NCBI Sequence Viewer
	XP_063123473	(Get FASTA)	NCBI Sequence Viewer
	XP_063123474	(Get FASTA)	NCBI Sequence Viewer
	XP_063123475	(Get FASTA)	NCBI Sequence Viewer
	XP_063123476	(Get FASTA)	NCBI Sequence Viewer
	XP_063123477	(Get FASTA)	NCBI Sequence Viewer
	XP_063123479	(Get FASTA)	NCBI Sequence Viewer
	XP_063123480	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89204	(Get FASTA)	NCBI Sequence Viewer
	EDL75395	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025740
	ENSRNOP00000025740.5
	ENSRNOP00000104252
	ENSRNOP00000105428
GenBank Protein	Q5FWU3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014240 ⟸ NM_001014218

- UniProtKB:

Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQFDTEYQRLEASYSDSPPGEEDLLVHVAEGSKSPWHHIENLDLFFSRVYNLHQKNGFTCMLI
GEIFELMQFLFVVAFTTFLVSCVDYDILFANKMVNHSLHPTEPVKVTLPDAFLPAQVCSARIQE
NGSLITILVIAGVFWIHRLIKFIYNICCYWEIHSFYLHALRIPMSALPYCTWQEVQARIVQTQK
EHQICIHKRELTELDIYHRILRFQNYMVALVNKSLLPLRFRLPGLGEVVFFTRGLKYNFELILF
WGPGSLFLNEWSLKAEYKRGGQRLELAQRLSNRILWIGIANFLLCPLILIWQILYAFFSYAEVL
KREPGALGARCWSLYGRCYLRHFNELEHELQSRLNRGYKPASKYMNCFLSPLLTLLAKNGAFFA
GSILAVLIALTIYDEDVLAVEHVLTTVTLLGVTVTVCRSFIPDQHMVFCPEQLLRVILAHIHYM
PDHWQGNAHRSQTRDEFAQLFQYKAVFILEELLSPIVTPLILIFCLRPRALEIIDFFRNFTVEV
VGVGDTCSFAQMDVRQHGHPQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPGWQPPRESTAF
LGFLKEQVQRDGAAAGLAQGGLLPENALFTSIQSLQSESEPLSLIANVVAGSSCRGPPLSRDLQ
GSRHRADVASALRSFSPLQPGQAPQGRVPSTMTGSGVDARTASSGSSVWEGQLQSLVLSEYAST
EMSLHALYMHQLHKQQTQAEPERHVWHRRESDESGESAPEEGGEGARAPQPIPRSASYPCATPR
PGAPETTALHGGFQRRYGGITDPGTVPRAPSHFSRLPLGGWAEDGQPASRHPEPVPEEGSEDEL
PPQVHKV

hide sequence

Ensembl Acc Id:

ENSRNOP00000025740 ⟸ ENSRNOT00000025740

Ensembl Acc Id:

ENSRNOP00000089389 ⟸ ENSRNOT00000111893

RefSeq Acc Id:	NP_001380809 ⟸ NM_001393880
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380810 ⟸ NM_001393881
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123470 ⟸ XM_063267400
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123469 ⟸ XM_063267399
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123476 ⟸ XM_063267406
- Peptide Label:	isoform X2
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123475 ⟸ XM_063267405
- Peptide Label:	isoform X2
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123479 ⟸ XM_063267409
- Peptide Label:	isoform X2
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123474 ⟸ XM_063267404
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123473 ⟸ XM_063267403
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123471 ⟸ XM_063267401
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123472 ⟸ XM_063267402
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123468 ⟸ XM_063267398
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123477 ⟸ XM_063267407
- Peptide Label:	isoform X2
- UniProtKB:	Q5FWU3 (UniProtKB/Swiss-Prot), A0A8I6A9Q8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123480 ⟸ XM_063267410
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000105428 ⟸ ENSRNOT00000151583

Ensembl Acc Id:

ENSRNOP00000104252 ⟸ ENSRNOT00000172309

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FWU3-F1-model_v2	AlphaFold	Q5FWU3	1-839	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696770

Promoter ID:

EPDNEW_R7294

Type:

initiation region

Name:

Atg9a_1

Description:

autophagy related 9A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,393,398 - 82,393,458	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310450	AgrOrtholog
BioCyc Gene	G2FUF-27092	BioCyc
Ensembl Genes	ENSRNOG00000018975	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025740	ENTREZGENE
	ENSRNOT00000025740.6	UniProtKB/Swiss-Prot
	ENSRNOT00000151583	ENTREZGENE
	ENSRNOT00000172309	ENTREZGENE
IMAGE_CLONE	IMAGE:7190326	IMAGE-MGC_LOAD
InterPro	Autophagy-rel_prot_9	UniProtKB/Swiss-Prot
KEGG Report	rno:363254	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105908	IMAGE-MGC_LOAD
NCBI Gene	363254	ENTREZGENE
PANTHER	AUTOPHAGY-RELATED PROTEIN 9A	UniProtKB/Swiss-Prot
	PTHR13038	UniProtKB/Swiss-Prot
Pfam	APG9	UniProtKB/Swiss-Prot
PhenoGen	Atg9a	PhenoGen
RatGTEx	ENSRNOG00000018975	RatGTEx
UniProt	A0A8I6A9Q8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LUH1_RAT	UniProtKB/TrEMBL
	ATG9A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-06-07	Atg9a	autophagy related 9A	Atg9a	ATG9 autophagy related 9 homolog A (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Atg9a	ATG9 autophagy related 9 homolog A (S. cerevisiae)	Atg9a	autophagy-related 9A (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Atg9a	autophagy-related 9A (yeast)	RGD1310450	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310450	similar to hypothetical protein	RGD1310450_predicted	similar to hypothetical protein (predicted)	Symbol and Name updated	1559027	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations