Sema4g (semaphorin 4G) - Rat Genome Database

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Gene: Sema4g (semaphorin 4G) Rattus norvegicus
Analyze
Symbol: Sema4g
Name: semaphorin 4G
RGD ID: 1310436
Description: Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in plasma membrane. Orthologous to human SEMA4G (semaphorin 4G); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361764; sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G; semaphorin-4G
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,799,552 - 253,814,504 (+)NCBIGRCr8
mRatBN7.21243,849,979 - 243,865,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,853,854 - 243,865,341 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1252,001,505 - 252,013,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,699,388 - 258,710,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,351,556 - 251,363,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,738,935 - 264,753,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,741,911 - 264,753,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01272,181,343 - 272,195,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41250,057,504 - 250,068,990 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11250,315,156 - 250,329,560 (+)NCBI
Celera1239,665,332 - 239,676,819 (+)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diethyl malate  (ISO)
endosulfan  (EXP)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (ISO)
lead(0)  (ISO)
menadione  (ISO)
methidathion  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Sema4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,799,552 - 253,814,504 (+)NCBIGRCr8
mRatBN7.21243,849,979 - 243,865,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,853,854 - 243,865,341 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1252,001,505 - 252,013,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,699,388 - 258,710,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,351,556 - 251,363,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,738,935 - 264,753,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,741,911 - 264,753,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01272,181,343 - 272,195,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41250,057,504 - 250,068,990 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11250,315,156 - 250,329,560 (+)NCBI
Celera1239,665,332 - 239,676,819 (+)NCBICelera
Cytogenetic Map1q54NCBI
SEMA4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,969,504 - 100,985,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,969,504 - 100,985,871 (+)EnsemblGRCh38hg38GRCh38
GRCh3710102,729,261 - 102,745,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,722,276 - 102,735,362 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410102,722,275 - 102,735,362NCBI
Celera1096,470,007 - 96,483,094 (+)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1096,361,299 - 96,374,700 (+)NCBIHuRef
CHM1_110103,016,494 - 103,029,583 (+)NCBICHM1_1
T2T-CHM13v2.010101,852,879 - 101,868,991 (+)NCBIT2T-CHM13v2.0
Sema4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,976,838 - 44,991,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,977,540 - 44,991,836 (+)EnsemblGRCm39 Ensembl
GRCm381944,988,743 - 45,003,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,989,101 - 45,003,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371945,063,834 - 45,077,885 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361945,042,655 - 45,056,706 (+)NCBIMGSCv36mm8
Celera1945,759,978 - 45,774,039 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.16NCBI
Sema4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554859,201,078 - 9,214,492 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554859,201,078 - 9,211,100 (-)NCBIChiLan1.0ChiLan1.0
SEMA4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,047,079 - 101,063,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,047,088 - 101,063,172 (+)Ensemblpanpan1.1panPan2
SEMA4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,659,541 - 13,673,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,662,686 - 13,672,359 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,829,017 - 13,843,309 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02814,127,615 - 14,141,909 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2814,127,665 - 14,141,907 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,673,360 - 13,687,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,714,650 - 13,728,945 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,846,625 - 13,860,915 (+)NCBIUU_Cfam_GSD_1.0
Sema4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,095,527 - 33,109,139 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,700,239 - 4,708,675 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,698,752 - 4,712,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14112,057,002 - 112,068,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114112,051,125 - 112,068,253 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214121,660,957 - 121,674,464 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA4G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,984,725 - 94,004,253 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,988,085 - 94,002,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604855,039,673 - 55,055,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema4g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624831577,875 - 589,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624831578,087 - 590,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sema4g
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:237
Count of miRNA genes:143
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000019956
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1223262787260522016Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat

Markers in Region
AI507908  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21243,865,092 - 243,865,180 (+)MAPPERmRatBN7.2
Rnor_6.01264,753,149 - 264,753,236NCBIRnor6.0
Rnor_5.01272,195,537 - 272,195,624UniSTSRnor5.0
RGSC_v3.41250,068,742 - 250,068,829UniSTSRGSC3.4
Celera1239,676,571 - 239,676,658UniSTS
Cytogenetic Map1q54UniSTS
AW554132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21243,864,851 - 243,864,936 (+)MAPPERmRatBN7.2
Rnor_6.01264,752,908 - 264,752,992NCBIRnor6.0
Rnor_5.01272,195,296 - 272,195,380UniSTSRnor5.0
RGSC_v3.41250,068,501 - 250,068,585UniSTSRGSC3.4
Celera1239,676,330 - 239,676,414UniSTS
Cytogenetic Map1q54UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000019956   ⟹   ENSRNOP00000019956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1243,853,854 - 243,865,341 (+)Ensembl
Rnor_6.0 Ensembl1264,741,911 - 264,753,397 (+)Ensembl
RefSeq Acc Id: NM_001108526   ⟹   NP_001101996
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81253,803,016 - 253,814,502 (+)NCBI
mRatBN7.21243,853,854 - 243,865,341 (+)NCBI
Rnor_6.01264,741,911 - 264,753,397 (+)NCBI
Rnor_5.01272,181,343 - 272,195,787 (+)NCBI
RGSC_v3.41250,057,504 - 250,068,990 (+)RGD
Celera1239,665,332 - 239,676,819 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231528   ⟹   XP_006231590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81253,799,552 - 253,814,504 (+)NCBI
mRatBN7.21243,849,979 - 243,865,343 (+)NCBI
Rnor_6.01264,738,935 - 264,753,399 (+)NCBI
Rnor_5.01272,181,343 - 272,195,787 (+)NCBI
Sequence:
RefSeq Acc Id: XR_351089
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81253,799,552 - 253,814,504 (+)NCBI
mRatBN7.21243,849,979 - 243,865,343 (+)NCBI
Rnor_6.01264,738,935 - 264,753,399 (+)NCBI
Rnor_5.01272,181,343 - 272,195,787 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101996 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231590 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94295 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019956.3
RefSeq Acc Id: NP_001101996   ⟸   NM_001108526
- Peptide Label: precursor
- UniProtKB: D4A6G2 (UniProtKB/TrEMBL),   A6JHH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231590   ⟸   XM_006231528
- Peptide Label: isoform X1
- UniProtKB: D4A6G2 (UniProtKB/TrEMBL),   A6JHH1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019956   ⟸   ENSRNOT00000019956
Protein Domains
Ig-like   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6G2-F1-model_v2 AlphaFold D4A6G2 1-837 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310436 AgrOrtholog
BioCyc Gene G2FUF-55572 BioCyc
Ensembl Genes ENSRNOG00000014650 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019956.5 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
KEGG Report rno:361764 UniProtKB/TrEMBL
NCBI Gene 361764 ENTREZGENE
PANTHER PTHR11036 UniProtKB/TrEMBL
  SEMAPHORIN-4G UniProtKB/TrEMBL
Pfam PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
PhenoGen Sema4g PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014650 RatGTEx
SMART PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A6JHH1 ENTREZGENE, UniProtKB/TrEMBL
  D4A6G2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-21 Sema4g  semaphorin 4G  Sema4g  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sema4g  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G   Sema4g_predicted  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sema4g_predicted  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (predicted)      Symbol and Name status set to approved 70820 APPROVED