Arhgef39 (Rho guanine nucleotide exchange factor 39) - Rat Genome Database

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Gene: Arhgef39 (Rho guanine nucleotide exchange factor 39) Rattus norvegicus
Analyze
Symbol: Arhgef39
Name: Rho guanine nucleotide exchange factor 39
RGD ID: 1310376
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of cell migration. Predicted to be active in plasma membrane. Orthologous to human ARHGEF39 (Rho guanine nucleotide exchange factor 39); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC298404; LOC298404; RGD1310376; Rho guanine nucleotide exchange factor (GEF) 39; similar to hypothetical protein FLJ14642; vav-like protein C9orf100 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,548,300 - 62,551,870 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,548,303 - 62,551,870 (-)EnsemblGRCr8
mRatBN7.2557,752,509 - 57,756,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,752,509 - 57,756,109 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx559,732,391 - 59,735,965 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,551,204 - 61,554,778 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,522,655 - 61,526,213 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,998,209 - 59,001,779 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,995,249 - 59,001,800 (-)Ensemblrn6Rnor6.0
Rnor_5.0563,522,803 - 63,526,373 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,977,497 - 59,979,258 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera556,333,084 - 56,336,654 (-)NCBICelera
RGSC_v3.1559,976,596 - 59,979,421 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-Nitrosopyrrolidine  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
resveratrol  (ISO)
Rutecarpine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22327280  


Genomics

Comparative Map Data
Arhgef39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,548,300 - 62,551,870 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,548,303 - 62,551,870 (-)EnsemblGRCr8
mRatBN7.2557,752,509 - 57,756,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,752,509 - 57,756,109 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx559,732,391 - 59,735,965 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,551,204 - 61,554,778 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,522,655 - 61,526,213 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,998,209 - 59,001,779 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,995,249 - 59,001,800 (-)Ensemblrn6Rnor6.0
Rnor_5.0563,522,803 - 63,526,373 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,977,497 - 59,979,258 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera556,333,084 - 56,336,654 (-)NCBICelera
RGSC_v3.1559,976,596 - 59,979,421 (-)NCBI
Cytogenetic Map5q22NCBI
ARHGEF39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,659,343 - 35,665,195 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,658,875 - 35,675,866 (-)Ensemblhg38GRCh38
GRCh37935,659,340 - 35,665,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,649,341 - 35,655,278 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34935,648,873 - 35,655,189NCBI
Celera935,592,890 - 35,598,827 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,614,950 - 35,620,887 (-)NCBIHuRef
CHM1_1935,659,169 - 35,665,106 (-)NCBICHM1_1
T2T-CHM13v2.0935,679,995 - 35,685,847 (-)NCBIT2T-CHM13v2.0
Arhgef39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,496,139 - 43,508,747 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,496,142 - 43,499,695 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38443,496,139 - 43,508,747 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,496,142 - 43,499,695 (-)Ensemblmm10GRCm38
MGSCv37443,509,014 - 43,512,532 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36443,517,242 - 43,520,730 (-)NCBIMGSCv36mm8
Celera443,530,162 - 43,533,680 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.04NCBI
Arhgef39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472633,405 - 640,305 (+)Ensembl
ChiLan1.0NW_004955472633,474 - 636,440 (+)NCBIChiLan1.0ChiLan1.0
ARHGEF39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,920,738 - 88,928,473 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,926,669 - 88,934,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,510,876 - 35,517,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,313,296 - 36,319,732 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,313,296 - 36,319,732 (-)EnsemblpanPan2panpan1.1
ARHGEF39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,191,170 - 52,200,769 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,196,462 - 52,200,778 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1150,765,489 - 50,768,556 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01153,256,556 - 53,265,956 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,261,492 - 53,271,849 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,807,441 - 51,810,506 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,790,921 - 51,793,983 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,493,055 - 52,496,124 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arhgef39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,110,767 - 167,126,613 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,660,454 - 3,663,696 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,660,364 - 3,663,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,383,925 - 236,387,667 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11236,383,684 - 236,387,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,108,957 - 264,120,992 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,937,488 - 44,941,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,937,923 - 44,944,842 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603842,042,641 - 42,047,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,126,781 - 5,130,320 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248685,126,041 - 5,130,696 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arhgef39
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v112,997,878 - 3,001,517 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arhgef39
23 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:208
Interacting mature miRNAs:247
Transcripts:ENSRNOT00000031336
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH137090  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2557,752,662 - 57,752,867 (+)MAPPERmRatBN7.2
Rnor_6.0558,998,363 - 58,998,567NCBIRnor6.0
Rnor_5.0563,522,957 - 63,523,161UniSTSRnor5.0
RGSC_v3.4559,975,843 - 59,976,047UniSTSRGSC3.4
Celera556,333,238 - 56,333,442UniSTS
RH 3.4 Map5392.6UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 65 160 90 89 58 84 58 6 339 182 11 139 75 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000031336   ⟹   ENSRNOP00000038636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,548,303 - 62,551,870 (-)Ensembl
mRatBN7.2 Ensembl557,752,509 - 57,756,109 (-)Ensembl
Rnor_6.0 Ensembl558,995,249 - 59,001,800 (-)Ensembl
RefSeq Acc Id: NM_001106676   ⟹   NP_001100146
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,548,300 - 62,551,870 (-)NCBI
mRatBN7.2557,752,509 - 57,756,079 (-)NCBI
Rnor_6.0558,998,209 - 59,001,779 (-)NCBI
Rnor_5.0563,522,803 - 63,526,373 (-)NCBI
RGSC_v3.4559,977,497 - 59,979,258 (-)RGD
Celera556,333,084 - 56,336,654 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100146 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58674 (Get FASTA)   NCBI Sequence Viewer  
  EDL98743 (Get FASTA)   NCBI Sequence Viewer  
  EDL98744 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038636
  ENSRNOP00000038636.3
RefSeq Acc Id: NP_001100146   ⟸   NM_001106676
- UniProtKB: B0BN40 (UniProtKB/TrEMBL),   F7FNF5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038636   ⟸   ENSRNOT00000031336
Protein Domains
DH   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN40-F1-model_v2 AlphaFold B0BN40 1-344 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693675
Promoter ID:EPDNEW_R4200
Type:multiple initiation site
Name:Arhgef39_1
Description:Rho guanine nucleotide exchange factor 39
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0559,001,785 - 59,001,845EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310376 AgrOrtholog
BioCyc Gene G2FUF-41508 BioCyc
Ensembl Genes ENSRNOG00000021433 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031336 ENTREZGENE
  ENSRNOT00000031336.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8371589 IMAGE-MGC_LOAD
InterPro ARHGEF39 UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
KEGG Report rno:298404 UniProtKB/TrEMBL
MGC_CLONE MGC:187678 IMAGE-MGC_LOAD
NCBI Gene 298404 ENTREZGENE
PANTHER PTHR47056 UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 39 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PhenoGen Arhgef39 PhenoGen
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021433 RatGTEx
SMART RhoGEF UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt B0BN40 ENTREZGENE, UniProtKB/TrEMBL
  F7FNF5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-19 Arhgef39  Rho guanine nucleotide exchange factor 39  Arhgef39  Rho guanine nucleotide exchange factor (GEF) 39  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Arhgef39  Rho guanine nucleotide exchange factor (GEF) 39  RGD1310376  similar to hypothetical protein FLJ14642  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310376  similar to hypothetical protein FLJ14642   RGD1310376_predicted  similar to hypothetical protein FLJ14642 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310376_predicted  similar to hypothetical protein FLJ14642 (predicted)  LOC298404_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298404_predicted  similar to hypothetical protein FLJ14642 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL