Chchd3 (coiled-coil-helix-coiled-coil-helix domain containing 3) - Rat Genome Database

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Gene: Chchd3 (coiled-coil-helix-coiled-coil-helix domain containing 3) Rattus norvegicus
Analyze
Symbol: Chchd3
Name: coiled-coil-helix-coiled-coil-helix domain containing 3
RGD ID: 1310325
Description: Predicted to enable molecular adaptor activity and phosphatase binding activity. Predicted to be involved in cristae formation and mitochondrial fusion. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human CHCHD3 (coiled-coil-helix-coiled-coil-helix domain containing 3); PARTICIPATES IN mitochondrial protein import pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil-helix-coiled-coil-helix domain-containing protein 3, mitochondrial; LOC296966; MICOS complex subunit MIC19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8462,327,574 - 62,584,085 (-)NCBIGRCr8
mRatBN7.2461,360,352 - 61,616,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl461,360,353 - 61,616,847 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx466,339,067 - 66,595,541 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0462,254,817 - 62,511,283 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0460,657,202 - 60,913,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0460,080,536 - 60,358,592 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl460,080,538 - 60,358,562 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0459,822,342 - 60,099,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4459,891,615 - 60,170,903 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1460,167,728 - 60,453,221 (-)NCBI
Celera456,445,848 - 56,700,814 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Mitofilin complexes: conserved organizers of mitochondrial membrane architecture. Zerbes RM, etal., Biol Chem. 2012 Nov;393(11):1247-61. doi: 10.1515/hsz-2012-0239.
Additional References at PubMed
PMID:12865426   PMID:14651853   PMID:18614015   PMID:19056867   PMID:19389623   PMID:20833797   PMID:21081504   PMID:21700703   PMID:22567091   PMID:25002582   PMID:25781180   PMID:25997101  
PMID:35352799  


Genomics

Comparative Map Data
Chchd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8462,327,574 - 62,584,085 (-)NCBIGRCr8
mRatBN7.2461,360,352 - 61,616,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl461,360,353 - 61,616,847 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx466,339,067 - 66,595,541 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0462,254,817 - 62,511,283 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0460,657,202 - 60,913,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0460,080,536 - 60,358,592 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl460,080,538 - 60,358,562 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0459,822,342 - 60,099,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4459,891,615 - 60,170,903 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1460,167,728 - 60,453,221 (-)NCBI
Celera456,445,848 - 56,700,814 (-)NCBICelera
Cytogenetic Map4q22NCBI
CHCHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387132,784,870 - 133,082,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7132,784,870 - 133,082,090 (-)EnsemblGRCh38hg38GRCh38
GRCh377132,469,631 - 132,766,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367132,120,163 - 132,417,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 347131,926,878 - 132,224,083NCBI
Celera7127,221,897 - 127,518,382 (-)NCBICelera
Cytogenetic Map7q32.3-q33NCBI
HuRef7126,786,105 - 127,082,694 (-)NCBIHuRef
CHM1_17132,405,107 - 132,701,867 (-)NCBICHM1_1
T2T-CHM13v2.07134,106,386 - 134,403,617 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27131,809,095 - 132,106,393 (-)NCBI
Chchd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39632,769,142 - 33,037,206 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl632,767,911 - 33,037,195 (-)EnsemblGRCm39 Ensembl
GRCm38632,792,207 - 33,060,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl632,790,976 - 33,060,260 (-)EnsemblGRCm38mm10GRCm38
MGSCv37632,742,227 - 33,010,152 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36632,722,385 - 32,990,310 (-)NCBIMGSCv36mm8
Celera632,774,244 - 33,045,665 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map613.97NCBI
Chchd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541034,818,649 - 35,093,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541034,818,660 - 35,093,398 (+)NCBIChiLan1.0ChiLan1.0
CHCHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26169,616,069 - 169,914,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1721,626,315 - 21,924,770 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07124,758,547 - 125,056,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17137,268,178 - 137,566,431 (-)NCBIpanpan1.1PanPan1.1panPan2
CHCHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1144,229,860 - 4,507,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl144,229,870 - 4,612,884 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,891,447 - 4,169,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,967,947 - 4,245,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,967,948 - 4,275,036 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1144,170,426 - 4,448,557 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,916,616 - 4,194,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0144,057,569 - 4,335,764 (+)NCBIUU_Cfam_GSD_1.0
Chchd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511822,433,794 - 22,707,772 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365792,566,330 - 2,840,870 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365792,566,353 - 2,840,364 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1816,052,627 - 16,350,974 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11816,052,611 - 16,348,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21817,408,462 - 17,410,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21817,086,333 - 17,353,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121101,424,017 - 101,715,708 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660421,657,904 - 1,950,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chchd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247833,330,997 - 3,607,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247833,330,977 - 3,607,666 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chchd3
738 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:143
Interacting mature miRNAs:171
Transcripts:ENSRNOT00000018001
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat

Markers in Region
BF388181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2461,606,246 - 61,606,453 (+)MAPPERmRatBN7.2
Rnor_6.0460,347,988 - 60,348,194NCBIRnor6.0
Rnor_5.0460,088,603 - 60,088,809UniSTSRnor5.0
RGSC_v3.4460,160,356 - 60,160,562UniSTSRGSC3.4
Celera456,690,237 - 56,690,443UniSTS
RH 3.4 Map4366.6UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000018001   ⟹   ENSRNOP00000018001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,360,353 - 61,616,826 (-)Ensembl
Rnor_6.0 Ensembl460,080,538 - 60,358,562 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095741   ⟹   ENSRNOP00000085835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,360,760 - 61,616,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107504   ⟹   ENSRNOP00000093797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,369,890 - 61,616,834 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107634   ⟹   ENSRNOP00000092148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,360,365 - 61,616,804 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117489   ⟹   ENSRNOP00000081053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,360,780 - 61,616,826 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119480   ⟹   ENSRNOP00000077614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl461,428,283 - 61,616,826 (-)Ensembl
RefSeq Acc Id: NM_001106588   ⟹   NP_001100058
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8462,327,576 - 62,584,033 (-)NCBI
mRatBN7.2461,360,354 - 61,616,821 (-)NCBI
Rnor_6.0460,080,538 - 60,358,562 (-)NCBI
Rnor_5.0459,822,342 - 60,099,177 (-)NCBI
RGSC_v3.4459,891,615 - 60,170,903 (-)RGD
Celera456,445,848 - 56,700,814 (-)RGD
Sequence:
RefSeq Acc Id: XM_017592525   ⟹   XP_017448014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8462,327,574 - 62,584,085 (-)NCBI
mRatBN7.2461,360,352 - 61,616,850 (-)NCBI
Rnor_6.0460,080,536 - 60,358,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592526   ⟹   XP_017448015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8462,327,574 - 62,584,085 (-)NCBI
mRatBN7.2461,360,352 - 61,616,850 (-)NCBI
Rnor_6.0460,080,536 - 60,358,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107283   ⟹   XP_038963211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8462,327,574 - 62,431,346 (-)NCBI
mRatBN7.2461,360,352 - 61,464,116 (-)NCBI
RefSeq Acc Id: NP_001100058   ⟸   NM_001106588
- UniProtKB: D3ZUX5 (UniProtKB/TrEMBL),   A6IEK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448015   ⟸   XM_017592526
- Peptide Label: isoform X2
- UniProtKB: D3ZUX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448014   ⟸   XM_017592525
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD55 (UniProtKB/TrEMBL),   D3ZUX5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018001   ⟸   ENSRNOT00000018001
RefSeq Acc Id: XP_038963211   ⟸   XM_039107283
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000081053   ⟸   ENSRNOT00000117489
Ensembl Acc Id: ENSRNOP00000077614   ⟸   ENSRNOT00000119480
Ensembl Acc Id: ENSRNOP00000092148   ⟸   ENSRNOT00000107634
Ensembl Acc Id: ENSRNOP00000093797   ⟸   ENSRNOT00000107504
Ensembl Acc Id: ENSRNOP00000085835   ⟸   ENSRNOT00000095741

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUX5-F1-model_v2 AlphaFold D3ZUX5 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692947
Promoter ID:EPDNEW_R3472
Type:initiation region
Name:Chchd3_1
Description:coiled-coil-helix-coiled-coil-helix domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0460,358,544 - 60,358,604EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310325 AgrOrtholog
BioCyc Gene G2FUF-45287 BioCyc
Ensembl Genes ENSRNOG00000013211 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018001.5 UniProtKB/TrEMBL
  ENSRNOT00000095741.1 UniProtKB/TrEMBL
  ENSRNOT00000107504.1 UniProtKB/TrEMBL
  ENSRNOT00000107634.1 UniProtKB/TrEMBL
  ENSRNOT00000117489.1 UniProtKB/TrEMBL
  ENSRNOT00000119480.1 UniProtKB/TrEMBL
InterPro MIC19/MIC25 UniProtKB/TrEMBL
  MICOS_subunit_Mic19 UniProtKB/TrEMBL
KEGG Report rno:296966 UniProtKB/TrEMBL
NCBI Gene 296966 ENTREZGENE
PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6 UniProtKB/TrEMBL
  MICOS COMPLEX SUBUNIT MIC19 UniProtKB/TrEMBL
Pfam MIC19_MIC25 UniProtKB/TrEMBL
PhenoGen Chchd3 PhenoGen
PROSITE CHCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013211 RatGTEx
UniProt A0A8I5YCF6_RAT UniProtKB/TrEMBL
  A0A8I6A2D7_RAT UniProtKB/TrEMBL
  A0A8I6AD55 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGG9_RAT UniProtKB/TrEMBL
  A0A8I6G7G6_RAT UniProtKB/TrEMBL
  A6IEK5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Chchd3  coiled-coil-helix-coiled-coil-helix domain containing 3   Chchd3_predicted  coiled-coil-helix-coiled-coil-helix domain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chchd3_predicted  coiled-coil-helix-coiled-coil-helix domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED