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Gene: Psd4 (pleckstrin and Sec7 domain containing 4) Rattus norvegicus

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Symbol:

Psd4

Name:

pleckstrin and Sec7 domain containing 4

RGD ID:

1310289

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of ARF protein signal transduction. Predicted to be located in cell junction; cell projection; and plasma membrane. Predicted to be active in ruffle membrane. Orthologous to human PSD4 (pleckstrin and Sec7 domain containing 4); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311785; MGC124698; PH and SEC7 domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSD4 (pleckstrin and Sec7 domain containing 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Psd4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Psd4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSD4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSD4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psd4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSD4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Psd4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Psd4 (pleckstrin and Sec7 domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PSD4 (pleckstrin and Sec7 domain containing 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Psd4 (pleckstrin and Sec7 domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	efa-6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	efa-6	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Efa6	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Efa6	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	SYT1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	psd4	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psd4	Alliance	DIOPT (OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	27,535,341 - 27,571,850 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	27,535,440 - 27,573,731 (+)	Ensembl				GRCr8
mRatBN7.2	3	7,137,069 - 7,173,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	7,137,155 - 7,173,571 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	10,240,809 - 10,293,052 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	18,827,042 - 18,879,299 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	17,016,851 - 17,069,110 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	1,478,432 - 1,515,094 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	1,478,525 - 1,514,934 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	2,622,918 - 2,659,328 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	1,974,423 - 2,010,749 (+)	NCBI		Celera
RGSC_v3.1	3	2,622,661 - 2,658,016 (+)	NCBI
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

ciglitazone (ISO)

corosolic acid (ISO)

cyclosporin A (ISO)

DDE (ISO)

doxorubicin (ISO)

ethylparaben (ISO)

fluorescein 5-isothiocyanate (ISO)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

L-methionine (ISO)

nickel atom (ISO)

nitrates (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

propanal (ISO)

quercetin (ISO)

quercitrin (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of ARF protein signal transduction (IEA)

vesicle-mediated transport (IBA)

Cellular Component

cell junction (IEA)

cleavage furrow (ISO)

plasma membrane (IEA)

ruffle membrane (IBA,IEA,ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA)

lipid binding (IEA)

phospholipid binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19946888	PMID:23603394

Genomics

Comparative Map Data

Psd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	27,535,341 - 27,571,850 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	27,535,440 - 27,573,731 (+)	Ensembl				GRCr8
mRatBN7.2	3	7,137,069 - 7,173,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	7,137,155 - 7,173,571 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	10,240,809 - 10,293,052 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	18,827,042 - 18,879,299 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	17,016,851 - 17,069,110 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	1,478,432 - 1,515,094 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	1,478,525 - 1,514,934 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	2,622,918 - 2,659,328 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	1,974,423 - 2,010,749 (+)	NCBI		Celera
RGSC_v3.1	3	2,622,661 - 2,658,016 (+)	NCBI
Cytogenetic Map	3	p13	NCBI

PSD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	113,173,971 - 113,209,391 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	113,157,325 - 113,209,396 (+)	Ensembl			hg38	GRCh38
GRCh37	2	113,931,548 - 113,966,968 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	113,648,031 - 113,677,148 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	113,647,790 - 113,676,908	NCBI
Celera	2	107,316,145 - 107,345,262 (+)	NCBI		Celera
Cytogenetic Map	2	q14.1	NCBI
HuRef	2	106,385,554 - 106,414,668 (+)	NCBI		HuRef
CHM1_1	2	113,935,985 - 113,965,077 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	113,600,541 - 113,635,966 (+)	NCBI		T2T-CHM13v2.0

Psd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	24,257,571 - 24,299,882 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	24,257,592 - 24,304,966 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	24,367,558 - 24,409,870 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	24,367,580 - 24,414,954 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	24,240,917 - 24,264,249 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	24,207,406 - 24,230,738 (+)	NCBI		MGSCv36	mm8
Celera	2	24,104,966 - 24,128,260 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	16.38	NCBI

Psd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	1,084,318 - 1,125,080 (-)	Ensembl
ChiLan1.0	NW_004955470	1,084,318 - 1,125,244 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	14,987,351 - 15,033,456 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	14,990,116 - 15,036,192 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	88,921,973 - 88,968,297 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	114,111,551 - 114,146,914 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	114,125,643 - 114,145,103 (+)	Ensembl			panPan2	panpan1.1

PSD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	37,260,358 - 37,292,630 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	37,260,290 - 37,295,356 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	37,030,108 - 37,065,265 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	38,037,999 - 38,073,165 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	38,050,087 - 38,073,163 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	37,173,374 - 37,208,479 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	37,229,902 - 37,265,025 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	37,442,341 - 37,477,724 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Psd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	82,603,481 - 82,617,919 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936783	1,498,088 - 1,511,823 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936783	1,497,988 - 1,512,403 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	16,200,957 - 16,221,345 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666080	3,458,902 - 3,504,981 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	13,250,095 - 13,310,750 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	13,250,146 - 13,288,672 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Psd4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	12,810,429 - 12,845,388 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Psd4
354 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	189
Count of miRNA genes:	129
Interacting mature miRNAs:	152
Transcripts:	ENSRNOT00000008161
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH130428

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	7,173,220 - 7,173,407 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	1,514,584 - 1,514,770	NCBI	Rnor6.0
Rnor_5.0	3	1,507,412 - 1,507,598	UniSTS	Rnor5.0
RGSC_v3.4	3	2,658,978 - 2,659,164	UniSTS	RGSC3.4
Celera	3	2,010,399 - 2,010,585	UniSTS
Cytogenetic Map	3	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	157	91	90	59	92	59	6	356	192	11	132	81	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008161 ⟹ ENSRNOP00000008161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	27,535,440 - 27,571,850 (+)	Ensembl
mRatBN7.2 Ensembl	3	7,137,155 - 7,173,571 (+)	Ensembl
Rnor_6.0 Ensembl	3	1,478,525 - 1,514,934 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099515 ⟹ ENSRNOP00000087791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	27,549,451 - 27,573,731 (+)	Ensembl
mRatBN7.2 Ensembl	3	7,150,907 - 7,173,571 (+)	Ensembl

RefSeq Acc Id:

NM_001134881 ⟹ NP_001128353

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,535,440 - 27,571,850 (+)	NCBI
mRatBN7.2	3	7,137,155 - 7,173,571 (+)	NCBI
Rnor_6.0	3	1,478,525 - 1,514,934 (+)	NCBI
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI
RGSC_v3.4	3	2,622,918 - 2,659,328 (+)	RGD
Celera	3	1,974,423 - 2,010,749 (+)	RGD

Sequence:

show sequence

GCGGGACGTGGAGACAGGCACATGCGAAGGGCTCGGCTGCAGTGGCAAGAATTCGATCTGACGT
CCTCCTGAAGGTGTCTCCACTGTGGCTGCGCCGTGCACCGGTCAAGACTAGCAGGGTATAGGCC
GGCTTTTGTTCCCCTAATATATGTGTCCACCAGTCCTCAGTTCACAACCTGTATGTCTAGGTCG
TGAGGCCAGCATCAAATTCAAGTGCTGAATATCTCCATTCTCACTTGCCTGCAAACCTCATTAG
CCCAGCCCCTTCCCCAAGCCCTAAGGTGATTGGATGTAATTAACATCTAATTGGATTTCTATGG
TTCCTCTGCGGAGAAACACCTCAAGGTCAAGGCTAGGTATGAATTCCTACCTTGGCTTGTGGAC
CTAATAATTCATGAAATGGGATTGTGAAAACAGGTGCTACCAAGGGCTTCTGCTCAACTGTCAC
TCTGTGGATGATGGGGGACCACCTCAGACCCATGGAATTTCTCAATATTTGCTTGGAAGACAAC
CTACAGCCCCATCCAGAAGCATATCCAAGTGAAGTGCATGGCCATCCGGGCCCTTCTGAACCTT
GCCAGGAACATACTTGGCCATTTGACCCCCCTGAATCTGCCAGGCCTGATGCTCATCATGGCGA
CTCTGATGTGGAACCCAGTCACCTGGGAAACCGCCTGGTGCATGGGGAGGCCAGCCAGGCCCCA
GCATCATCGAGGTCACTAGAGGACAACAGCTCTCTGGGGAGTCCACAGCAGAACCGGAGCTCAT
CCACCCAGGTGGTATTCTGGGCTGGCATCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGA
GGAGCTAGAGAAAACAGAGGGACTCAAAGCAGGACTCAGATGCTGTATTCCACCGCCCTCTAAG
GACTTCCTTGGTGATGTGGGCCTGAAACCCAGTCGGCCCAAGGAGGATGAAGACTCTGGGGATG
ACAGCAGTGGGTCTGAGGAAGAGAACCAGACCTGGCCAAAGAAGAAAATGCCAGGCTCCTCCCC
AGAGTGGGGTGCTGAGGAGGACAGCATCTTCTTTGATAATCCCCTCTTCCTGGAAAGCCCTTGC
TCAGACACCAGCACTGAAGGAGAATGCTTTTCCTGGGGCTACCCGAATTCCCACCTAGATATGA
AGACCTGGCCTCATAGGCCTCAAACCCTGGATTCTCCTCTCCAAGAAGGCACAGGGCTCTGGAC
GCAAGAAAATGATCTGGATTTGGGGAGCAACACTGCTGACCATAGTAGGTGCTCCACCCCTCCA
TTCCCTGTGCCTTCCTATAAGATGCACCCCTGCTTGGCCTTAGGATCCACTGAAGGAGCTCCCA
TAGTACCTCCTGATCAGGTGGGTGAGACTTCTTGGGAAGATGATGTTGGCCCTGGCTCACCTAA
AGCACCCTCTGTAGACCATGAATTGATCCAGGAATCAGATAACTTTGGATCTGACCTTAGACCT
GCCACAACACATCCTGTACAGCCTTGGGGCTCACAGATACCCCAAAGCCTTTCTGACCTGGCCC
CACCCTTACATGAGGACCTGCAGGATCCTTCCAGGCCCCAGAAGCCTCTTATCTCCCAGAACGG
AGGTGAGAGGGATGCTGGCTGTTTCCAGGAGCCCATGCTCTGCACCTTGGCCCCCTGGGGGAGC
CAAGCATCTTTACTGGAGCCTAGCTGCCCAGAATCTGGGGGCAGAGGCTCTGGACCCCGGCCCA
GTCCTGTGTCTTCTCAGGAGAGCAGTCCACAGGATCAGCTCCATAGCCTCAAGTGGCCACAAGA
TACCTCACACCCTTCGCTCCTGGAGAAGGATAAATCAGAATTGAGTTCCCTGAAGAAAGATGAG
ACAGAGGAAGTCCCAAGCCTGATGCAGGAGGCAGAGTGTGAAGATACATCCAGAAGTGAAGATG
CTTCAGTCACCGAGCACCATGTTCACTTGGCTTCTGCAGAAGGACTTCCTGAGAGCCCCATGCC
CCCAGAGGAAGCTCAATCCCCAGAGGAAGACTGGAGGCCATCACCATCTAGAGAGAAGATGGCT
AATAGCATCAGAAATGACGAGGGGGCTTGGAACCTAGCCTTGCGCCTCTATCAACTGAATGGTT
TTCGGAAGTCCGAAGTGGCTGCACACCTTCGCAAGAACAATGACTTCAGCAGGGCTGTAGCCGA
GGCCTACTTGTCCTTCTTCCAGTTCGAAGGTCAGAGCCTGGACCGAGCCCTCCGTGGTTTCCTC
CAGGCCCTGGTGCTCAGTGGAGAGACTCAGGAGCGGGAACGAATTCTCTACCAATTTTCCAAAC
GCTTCCATTACTGCAATCCTGGAGCCTTCCCCTCAGTAGATTCTGTACACACCTTGACCTGTGC
AATTATGCTCCTTAACACAGACTTACATGGACAGAACATTGGAAAGAGCATGAGCTGTCAGGAA
TTTGTAACCAACCTGAATGGCCTGCAGGATGGTGGAAACTTCCCCAAAGAGCTGCTGAAGGCTC
TCTACTGGTCTATCCGAAGTGAGAAGCTTGAGTGGGCTGTAGATGAAGAAGATGCAGCCAGACC
TGAGAAAGACCAGCCCTCTCCCTCAGCTGGCAAGATAAGCAGCCCCTTCCTGCAGTTGGCTCAG
GACCCCACGATGCCCACCTATAAGCAGGGTATCCTGGCACGGAAGATGCATCATGATGCTGATG
GCAAGAAGACACCATGGGGCAAACGAGGCTGGAAGATGTTTCACACCTTACTGAGAGGGATGGT
GCTCTACTTCCTGAAGGGAGAGGGCCAGTGGCTGGATGGGGAGAGTTTGGTTGGACATATGATG
GATGAACCTGTGGGAGTGCACCACTCGCTAGCCAGCCCAGCCACCCACTACACCAAGAAGCCAC
ATGTCTTCCAGCTTCGGACTGCAGACTGGCGTCTCTACCTCTTCCAGGCACCCACGGCCAAAGA
AATGGCTTCCTGGATTGCACGAATCAACCTGGCGGCTGCCACACACTCAGCACCTCCCTTTCCA
GCTGCAGTGGGCTCCCAGCGCAGATTCGTGAGGCCCATCCTGCCCATGGGCCCAGCGCAGAGCT
CCCTGGAGGAGCAGCATCGATCCCACGAGAACTGCCTGGATGCTGCCTCAGATGACCTGTTGGA
TTTGCAGAGAAACCTGCCAGAGCGAAGGGGCCGCAGCCGCGAGTTGGAGGAGTACCGCTTACGG
AAGGAGTATCTGGAGCACGAGAAAACTCGATATGAGACGTACGTGCAGCTTCTGGTGGCCCGCC
TACACTTCCCTCTGAAAGACCTGGCTTTGTGGGAAGATCAGCTTGGGAACGAAGCTGATAGTTG
TCAGGAGCCCAGGCCAAGCCTGAAGAAGTCCCACTCAAGCCCATCCCTGCACCAGGATGAGGCC
CCCACCACAGCCAAGGTGAAACGTAACATCTCAGAGCGCAGAACCTACCGGAAGATCATTCCCA
AGAGGAACCGCAACCAGCTGTGAAGCTGTCGCCCTCTCAGATACTGACTCCGGGGTAGACCTGA
GATGCAGCCTTATGTGCCAGGACCATGGTGAAGGATGAGGCATCTGTGCCTCTGTACTGAAGGA
TGGGGCTCATTTCCCTGTGTCCCCATTCCTGGCTCTTCAGAGATTAAGGTTGAGTGAGGCAGTC
CTCTCTCCTCTAAGACACGGGGCCTGGGTTTCTGAGATGGCCTGAGGCAGTCTAACCAAGACTG
CTCACTGGGGACAATCTTACTTTGGGAGTTAGGTGACCTGGCAGAAGTTGGTCCCCAAAGCATA
GAACAGGACCTCTTGGAAATTCCTAAGCAGCATCTTGTGACCTAGGAAGCAGGGTTACTCTAGC
CCAGTAGAGCACAGCCTTCTACCAGACTCCTTGGCAGGTTCAGGGCTCAGGGATACCGTGGGGC
ACCGAGCTTCTGGTCTTCTGGCTGCTTTATCCTGCAAACATAAGAGGGCTGCATGCCTAATTGT
TAATCAGCAGAGCAGAGCTGTGGCCTGGGCCAGGCTCAATAGGAGTGGGGGGTGGCTCTAGAGG
TCTGTGGAGAACACTTGGAACAAGGAGTGTTTGTTTCCTGAGAGTAATGAGGGTAGCATTTCTA
GGGTAGACCACTGTGGAGGGAGAGGGGGTGAACATGGTGACAGTTCTCCTTGGGAGTCTGCCTG
GCAGTGCAAGTAGAGATTGGAGGCCTGGGTTCTCACTGCCTTCTGTAGCCACCCCCACCCCACC
TCCACCCTCAATACCCCTCAACACTGCATTCCTGAGGGATGTCAGGACCTATTTCTCATTCCCA
GGGCAGCTCCCAGACCTTTGCTGCCCTGCCTTGGGAAATCCCCTTGGACTTCTCTTTTGGCTTC
TTCCCAGGTATGCCTGTTCTCTAGGGGAGGCCCTGGAGACTCAGGGACTGGGGCTGTGCCTGTG
AGGAGGAGGCTGGCTTGGGGGAGCAGCCACATTGTCTCTGTTCAGCCATGTGTGCAAAGAGGCT
TCTGGCCAACTGGGAGCCTCTGCTGCTCACCCTTTAGCTGACACGTTGCCTCTCCTGCTTCCTG
CTGGGTCACACATCCTCCCTTCAATAATGCTTGTAGCAACTCTAAGCCCTTAGAGCTCCACAAA
GTGGAGCTGGTTCTTAGCGCCAGGGAACTCTTTGACTAGGGCCTGGGGCTGGCCCTTGCACCCA
ATGGGTGTGCAATAAATAGAACCTACCAAAGAAACGTGCGTATGTGTGTGCGCATGCGTGCGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGGGGAGT

hide sequence

RefSeq Acc Id:

XM_006233591 ⟹ XP_006233653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,360 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,151,075 - 7,173,486 (+)	NCBI
Rnor_6.0	3	1,492,481 - 1,515,094 (+)	NCBI
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI

Sequence:

show sequence

GGAGGGTTATGTGTCACGGTGGTGAGGGGAGCGGAAGTCGGAAGCTTCAGTCGCCACATTTGCA
GGCGGGGAACCATGCAGCAGTAAGTTCCTGGGGCAGGGGAACGGATCAGGAGAGCCTGAAGGCT
AGATGTGGATTTCCAGTTCCTACCTTGGCTTGTGGACCTAATAATTCATGAAATGGGATTGTGA
AAACAGGTGCTACCAAGGGCTTCTGCTCAACTGTCACTCTGTGGATGATGGGGGACCACCTCAG
ACCCATGGAATTTCTCAATATTTGCTTGGAAGACAACCTACAGCCCCATCCAGAAGCATATCCA
AGTGAAGTGCATGGCCATCCGGGCCCTTCTGAACCTTGCCAGGAACATACTTGGCCATTTGACC
CCCCTGAATCTGCCAGGCCTGATGCTCATCATGGCGACTCTGATGTGGAACCCAGTCACCTGGG
AAACCGCCTGGTGCATGGGGAGGCCAGCCAGGCCCCAGCATCATCGAGGTCACTAGAGGACAAC
AGCTCTCTGGGGAGTCCACAGCAGAACCGGAGCTCATCCACCCAGGTGGTATTCTGGGCTGGCA
TCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTAGAGAAAACAGAGGGACTCAA
AGCAGGACTCAGATGCTGTATTCCACCGCCCTCTAAGGACTTCCTTGGTGATGTGGGCCTGAAA
CCCAGTCGGCCCAAGGAGGATGAAGACTCTGGGGATGACAGCAGTGGGTCTGAGGAAGAGAACC
AGACCTGGCCAAAGAAGAAAATGCCAGGCTCCTCCCCAGAGTGGGGTGCTGAGGAGGACAGCAT
CTTCTTTGATAATCCCCTCTTCCTGGAAAGCCCTTGCTCAGACACCAGCACTGAAGGAGAATGC
TTTTCCTGGGGCTACCCGAATTCCCACCTAGATATGAAGACCTGGCCTCATAGGCCTCAAACCC
TGGATTCTCCTCTCCAAGAAGGCACAGGGCTCTGGACGCAAGAAAATGATCTGGATTTGGGGAG
CAACACTGCTGACCATAGTAGGTGCTCCACCCCTCCATTCCCTGTGCCTTCCTATAAGATGCAC
CCCTGCTTGGCCTTAGGATCCACTGAAGGAGCTCCCATAGTACCTCCTGATCAGGTGGGTGAGA
CTTCTTGGGAAGATGATGTTGGCCCTGGCTCACCTAAAGCACCCTCTGTAGACCATGAATTGAT
CCAGGAATCAGATAACTTTGGATCTGACCTTAGACCTGCCACAACACATCCTGTACAGCCTTGG
GGCTCACAGATACCCCAAAGCCTTTCTGACCTGGCCCCACCCTTACATGAGGACCTGCAGGATC
CTTCCAGGCCCCAGAAGCCTCTTATCTCCCAGAACGGAGGTGAGAGGGATGCTGGCTGTTTCCA
GGAGCCCATGCTCTGCACCTTGGCCCCCTGGGGGAGCCAAGCATCTTTACTGGAGCCTAGCTGC
CCAGAATCTGGGGGCAGAGGCTCTGGACCCCGGCCCAGTCCTGTGTCTTCTCAGGAGAGCAGTC
CACAGGATCAGCTCCATAGCCTCAAGTGGCCACAAGATACCTCACACCCTTCGCTCCTGGAGAA
GGATAAATCAGAATTGAGTTCCCTGAAGAAAGATGAGACAGAGGAAGTCCCAAGCCTGATGCAG
GAGGCAGAGTGTGAAGATACATCCAGAAGTGAAGATGCTTCAGTCACCGAGCACCATGTTCACT
TGGCTTCTGCAGAAGGACTTCCTGAGAGCCCCATGCCCCCAGAGGAAGCTCAATCCCCAGAGGA
AGACTGGAGGCCATCACCATCTAGAGAGAAGATGGCTAATAGCATCAGAAATGACGAGGGGGCT
TGGAACCTAGCCTTGCGCCTCTATCAACTGAATGGTTTTCGGAAGTCCGAAGTGGCTGCACACC
TTCGCAAGAACAATGACTTCAGCAGGGCTGTAGCCGAGGCCTACTTGTCCTTCTTCCAGTTCGA
AGGTCAGAGCCTGGACCGAGCCCTCCGTGGTTTCCTCCAGGCCCTGGTGCTCAGTGGAGAGACT
CAGGAGCGGGAACGAATTCTCTACCAATTTTCCAAACGCTTCCATTACTGCAATCCTGGAGCCT
TCCCCTCAGTAGATTCTGTACACACCTTGACCTGTGCAATTATGCTCCTTAACACAGACTTACA
TGGACAGAACATTGGAAAGAGCATGAGCTGTCAGGAATTTGTAACCAACCTGAATGGCCTGCAG
GATGGTGGAAACTTCCCCAAAGAGCTGCTGAAGGCTCTCTACTGGTCTATCCGAAGTGAGAAGC
TTGAGTGGGCTGTAGATGAAGAAGATGCAGCCAGACCTGAGAAAGACCAGCCCTCTCCCTCAGC
TGGCAAGATAAGCAGCCCCTTCCTGCAGTTGGCTCAGGACCCCACGATGCCCACCTATAAGCAG
GGTATCCTGGCACGGAAGATGCATCATGATGCTGATGGCAAGAAGACACCATGGGGCAAACGAG
GCTGGAAGATGTTTCACACCTTACTGAGAGGGATGGTGCTCTACTTCCTGAAGGGAGAGGGCCA
GTGGCTGGATGGGGAGAGTTTGGTTGGACATATGATGGATGAACCTGTGGGAGTGCACCACTCG
CTAGCCAGCCCAGCCACCCACTACACCAAGAAGCCACATGTCTTCCAGCTTCGGACTGCAGACT
GGCGTCTCTACCTCTTCCAGGCACCCACGGCCAAAGAAATGGCTTCCTGGATTGCACGAATCAA
CCTGGCGGCTGCCACACACTCAGCACCTCCCTTTCCAGCTGCAGTGGGCTCCCAGCGCAGATTC
GTGAGGCCCATCCTGCCCATGGGCCCAGCGCAGAGCTCCCTGGAGGAGCAGCATCGATCCCACG
AGAACTGCCTGGATGCTGCCTCAGATGACCTGTTGGATTTGCAGAGAAACCTGCCAGAGCGAAG
GGGCCGCAGCCGCGAGTTGGAGGAGTACCGCTTACGGAAGGAGTATCTGGAGCACGAGAAAACT
CGATATGAGACGTACGTGCAGCTTCTGGTGGCCCGCCTACACTTCCCTCTGAAAGACCTGGCTT
TGTGGGAAGATCAGCTTGGGAACGAAGCTGATAGTTGTCAGGAGCCCAGGCCAAGCCTGAAGAA
GTCCCACTCAAGCCCATCCCTGCACCAGGATGAGGCCCCCACCACAGCCAAGGTGAAACGTAAC
ATCTCAGAGCGCAGAACCTACCGGAAGATCATTCCCAAGAGGAACCGCAACCAGCTGTGAAGCT
GTCGCCCTCTCAGATACTGACTCCGGGGTAGACCTGAGATGCAGCCTTATGTGCCAGGACCATG
GTGAAGGATGAGGCATCTGTGCCTCTGTACTGAAGGATGGGGCTCATTTCCCTGTGTCCCCATT
CCTGGCTCTTCAGAGATTAAGGTTGAGTGAGGCAGTCCTCTCTCCTCTAAGACACGGGGCCTGG
GTTTCTGAGATGGCCTGAGGCAGTCTAACCAAGACTGCTCACTGGGGACAATCTTACTTTGGGA
GTTAGGTGACCTGGCAGAAGTTGGTCCCCAAAGCATAGAACAGGACCTCTTGGAAATTCCTAAG
CAGCATCTTGTGACCTAGGAAGCAGGGTTACTCTAGCCCAGTAGAGCACAGCCTTCTACCAGAC
TCCTTGGCAGGTTCAGGGCTCAGGGATACCGTGGGGCACCGAGCTTCTGGTCTTCTGGCTGCTT
TATCCTGCAAACATAAGAGGGCTGCATGCCTAATTGTTAATCAGCAGAGCAGAGCTGTGGCCTG
GGCCAGGCTCAATAGGAGTGGGGGGTGGCTCTAGAGGTCTGTGGAGAACACTTGGAACAAGGAG
TGTTTGTTTCCTGAGAGTAATGAGGGTAGCATTTCTAGGGTAGACCACTGTGGAGGGAGAGGGG
GTGAACATGGTGACAGTTCTCCTTGGGAGTCTGCCTGGCAGTGCAAGTAGAGATTGGAGGCCTG
GGTTCTCACTGCCTTCTGTAGCCACCCCCACCCCACCTCCACCCTCAATACCCCTCAACACTGC
ATTCCTGAGGGATGTCAGGACCTATTTCTCATTCCCAGGGCAGCTCCCAGACCTTTGCTGCCCT
GCCTTGGGAAATCCCCTTGGACTTCTCTTTTGGCTTCTTCCCAGGTATGCCTGTTCTCTAGGGG
AGGCCCTGGAGACTCAGGGACTGGGGCTGTGCCTGTGAGGAGGAGGCTGGCTTGGGGGAGCAGC
CACATTGTCTCTGTTCAGCCATGTGTGCAAAGAGGCTTCTGGCCAACTGGGAGCCTCTGCTGCT
CACCCTTTAGCTGACACGTTGCCTCTCCTGCTTCCTGCTGGGTCACACATCCTCCCTTCAATAA
TGCTTGTAGCAACTCTAAGCCCTTAGAGCTCCACAAAGTGGAGCTGGTTCTTAGCGCCAGGGAA
CTCTTTGACTAGGGCCTGGGGCTGGCCCTTGCACCCAATGGGTGTGCAATAAATAGAACCTACC
AAAGAAACGTGCGTATGTGTGTGCGCATGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTAAGGGGGAGTCAGTCAGGTAGCCTTGGCCACCTACAGTGTGTCAGG
CTGTATCTTCCTTTGCCCCCTTGTGATAGTATGTTTGTGTATGTGTGTGTCCTGTATGTTCATG
TGTGTACCCCAATGTACTTACAAACTATTTAAGCTCAGAAGCATAAGCATTTTTTTTTCA

hide sequence

RefSeq Acc Id:

XM_006233592 ⟹ XP_006233654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,535,341 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,137,069 - 7,173,486 (+)	NCBI
Rnor_6.0	3	1,478,432 - 1,515,094 (+)	NCBI
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI

Sequence:

show sequence

ACCCGGTTCAGCGCTGCGCCTCCCCGCAGCCCTCGCGGCTCCGGCCGGCTCCTGGGCCCGGAGC
CAAAGGGGCGCCCGGGCTGCCGGAGCCCAGCGGGACGTGGAGACAGGCACATGCGAAGGGCTCG
GCTGCAGTGGCAAGAATTCGATCTGACGTCCTCCTGAAGGTGTCTCCACTGTGGCTGCGCCGTG
CACCGGTCAAGACTAGCAGGCTAGATGTGGATTTCCAGTTCCTACCTTGGCTTGTGGACCTAAT
AATTCATGAAATGGGATTGTGAAAACAGGTGCTACCAAGGGCTTCTGCTCAACTGTCACTCTGT
GGATGATGGGGGACCACCTCAGACCCATGGAATTTCTCAATATTTGCTTGGAAGACAACCTACA
GCCCCATCCAGAAGCATATCCAAGTGAAGTGCATGGCCATCCGGGCCCTTCTGAACCTTGCCAG
GAACATACTTGGCCATTTGACCCCCCTGAATCTGCCAGGCCTGATGCTCATCATGGCGACTCTG
ATGTGGAACCCAGTCACCTGGGAAACCGCCTGGTGCATGGGGAGGCCAGCCAGGCCCCAGCATC
ATCGAGGTCACTAGAGGACAACAGCTCTCTGGGGAGTCCACAGCAGAACCGGAGCTCATCCACC
CAGGTGGTATTCTGGGCTGGCATCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGAGGAGC
TAGAGAAAACAGAGGGACTCAAAGCAGGACTCAGATGCTGTATTCCACCGCCCTCTAAGGACTT
CCTTGGTGATGTGGGCCTGAAACCCAGTCGGCCCAAGGAGGATGAAGACTCTGGGGATGACAGC
AGTGGGTCTGAGGAAGAGAACCAGACCTGGCCAAAGAAGAAAATGCCAGGCTCCTCCCCAGAGT
GGGGTGCTGAGGAGGACAGCATCTTCTTTGATAATCCCCTCTTCCTGGAAAGCCCTTGCTCAGA
CACCAGCACTGAAGGAGAATGCTTTTCCTGGGGCTACCCGAATTCCCACCTAGATATGAAGACC
TGGCCTCATAGGCCTCAAACCCTGGATTCTCCTCTCCAAGAAGGCACAGGGCTCTGGACGCAAG
AAAATGATCTGGATTTGGGGAGCAACACTGCTGACCATAGTAGGTGCTCCACCCCTCCATTCCC
TGTGCCTTCCTATAAGATGCACCCCTGCTTGGCCTTAGGATCCACTGAAGGAGCTCCCATAGTA
CCTCCTGATCAGGTGGGTGAGACTTCTTGGGAAGATGATGTTGGCCCTGGCTCACCTAAAGCAC
CCTCTGTAGACCATGAATTGATCCAGGAATCAGATAACTTTGGATCTGACCTTAGACCTGCCAC
AACACATCCTGTACAGCCTTGGGGCTCACAGATACCCCAAAGCCTTTCTGACCTGGCCCCACCC
TTACATGAGGACCTGCAGGATCCTTCCAGGCCCCAGAAGCCTCTTATCTCCCAGAACGGAGGTG
AGAGGGATGCTGGCTGTTTCCAGGAGCCCATGCTCTGCACCTTGGCCCCCTGGGGGAGCCAAGC
ATCTTTACTGGAGCCTAGCTGCCCAGAATCTGGGGGCAGAGGCTCTGGACCCCGGCCCAGTCCT
GTGTCTTCTCAGGAGAGCAGTCCACAGGATCAGCTCCATAGCCTCAAGTGGCCACAAGATACCT
CACACCCTTCGCTCCTGGAGAAGGATAAATCAGAATTGAGTTCCCTGAAGAAAGATGAGACAGA
GGAAGTCCCAAGCCTGATGCAGGAGGCAGAGTGTGAAGATACATCCAGAAGTGAAGATGCTTCA
GTCACCGAGCACCATGTTCACTTGGCTTCTGCAGAAGGACTTCCTGAGAGCCCCATGCCCCCAG
AGGAAGCTCAATCCCCAGAGGAAGACTGGAGGCCATCACCATCTAGAGAGAAGATGGCTAATAG
CATCAGAAATGACGAGGGGGCTTGGAACCTAGCCTTGCGCCTCTATCAACTGAATGGTTTTCGG
AAGTCCGAAGTGGCTGCACACCTTCGCAAGAACAATGACTTCAGCAGGGCTGTAGCCGAGGCCT
ACTTGTCCTTCTTCCAGTTCGAAGGTCAGAGCCTGGACCGAGCCCTCCGTGGTTTCCTCCAGGC
CCTGGTGCTCAGTGGAGAGACTCAGGAGCGGGAACGAATTCTCTACCAATTTTCCAAACGCTTC
CATTACTGCAATCCTGGAGCCTTCCCCTCAGTAGATTCTGTACACACCTTGACCTGTGCAATTA
TGCTCCTTAACACAGACTTACATGGACAGAACATTGGAAAGAGCATGAGCTGTCAGGAATTTGT
AACCAACCTGAATGGCCTGCAGGATGGTGGAAACTTCCCCAAAGAGCTGCTGAAGGCTCTCTAC
TGGTCTATCCGAAGTGAGAAGCTTGAGTGGGCTGTAGATGAAGAAGATGCAGCCAGACCTGAGA
AAGACCAGCCCTCTCCCTCAGCTGGCAAGATAAGCAGCCCCTTCCTGCAGTTGGCTCAGGACCC
CACGATGCCCACCTATAAGCAGGGTATCCTGGCACGGAAGATGCATCATGATGCTGATGGCAAG
AAGACACCATGGGGCAAACGAGGCTGGAAGATGTTTCACACCTTACTGAGAGGGATGGTGCTCT
ACTTCCTGAAGGGAGAGGGCCAGTGGCTGGATGGGGAGAGTTTGGTTGGACATATGATGGATGA
ACCTGTGGGAGTGCACCACTCGCTAGCCAGCCCAGCCACCCACTACACCAAGAAGCCACATGTC
TTCCAGCTTCGGACTGCAGACTGGCGTCTCTACCTCTTCCAGGCACCCACGGCCAAAGAAATGG
CTTCCTGGATTGCACGAATCAACCTGGCGGCTGCCACACACTCAGCACCTCCCTTTCCAGCTGC
AGTGGGCTCCCAGCGCAGATTCGTGAGGCCCATCCTGCCCATGGGCCCAGCGCAGAGCTCCCTG
GAGGAGCAGCATCGATCCCACGAGAACTGCCTGGATGCTGCCTCAGATGACCTGTTGGATTTGC
AGAGAAACCTGCCAGAGCGAAGGGGCCGCAGCCGCGAGTTGGAGGAGTACCGCTTACGGAAGGA
GTATCTGGAGCACGAGAAAACTCGATATGAGACGTACGTGCAGCTTCTGGTGGCCCGCCTACAC
TTCCCTCTGAAAGACCTGGCTTTGTGGGAAGATCAGCTTGGGAACGAAGCTGATAGTTGTCAGG
AGCCCAGGCCAAGCCTGAAGAAGTCCCACTCAAGCCCATCCCTGCACCAGGATGAGGCCCCCAC
CACAGCCAAGGTGAAACGTAACATCTCAGAGCGCAGAACCTACCGGAAGATCATTCCCAAGAGG
AACCGCAACCAGCTGTGAAGCTGTCGCCCTCTCAGATACTGACTCCGGGGTAGACCTGAGATGC
AGCCTTATGTGCCAGGACCATGGTGAAGGATGAGGCATCTGTGCCTCTGTACTGAAGGATGGGG
CTCATTTCCCTGTGTCCCCATTCCTGGCTCTTCAGAGATTAAGGTTGAGTGAGGCAGTCCTCTC
TCCTCTAAGACACGGGGCCTGGGTTTCTGAGATGGCCTGAGGCAGTCTAACCAAGACTGCTCAC
TGGGGACAATCTTACTTTGGGAGTTAGGTGACCTGGCAGAAGTTGGTCCCCAAAGCATAGAACA
GGACCTCTTGGAAATTCCTAAGCAGCATCTTGTGACCTAGGAAGCAGGGTTACTCTAGCCCAGT
AGAGCACAGCCTTCTACCAGACTCCTTGGCAGGTTCAGGGCTCAGGGATACCGTGGGGCACCGA
GCTTCTGGTCTTCTGGCTGCTTTATCCTGCAAACATAAGAGGGCTGCATGCCTAATTGTTAATC
AGCAGAGCAGAGCTGTGGCCTGGGCCAGGCTCAATAGGAGTGGGGGGTGGCTCTAGAGGTCTGT
GGAGAACACTTGGAACAAGGAGTGTTTGTTTCCTGAGAGTAATGAGGGTAGCATTTCTAGGGTA
GACCACTGTGGAGGGAGAGGGGGTGAACATGGTGACAGTTCTCCTTGGGAGTCTGCCTGGCAGT
GCAAGTAGAGATTGGAGGCCTGGGTTCTCACTGCCTTCTGTAGCCACCCCCACCCCACCTCCAC
CCTCAATACCCCTCAACACTGCATTCCTGAGGGATGTCAGGACCTATTTCTCATTCCCAGGGCA
GCTCCCAGACCTTTGCTGCCCTGCCTTGGGAAATCCCCTTGGACTTCTCTTTTGGCTTCTTCCC
AGGTATGCCTGTTCTCTAGGGGAGGCCCTGGAGACTCAGGGACTGGGGCTGTGCCTGTGAGGAG
GAGGCTGGCTTGGGGGAGCAGCCACATTGTCTCTGTTCAGCCATGTGTGCAAAGAGGCTTCTGG
CCAACTGGGAGCCTCTGCTGCTCACCCTTTAGCTGACACGTTGCCTCTCCTGCTTCCTGCTGGG
TCACACATCCTCCCTTCAATAATGCTTGTAGCAACTCTAAGCCCTTAGAGCTCCACAAAGTGGA
GCTGGTTCTTAGCGCCAGGGAACTCTTTGACTAGGGCCTGGGGCTGGCCCTTGCACCCAATGGG
TGTGCAATAAATAGAACCTACCAAAGAAACGTGCGTATGTGTGTGCGCATGCGTGCGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGGGGAGTCAGTCAGGTAGCCT
TGGCCACCTACAGTGTGTCAGGCTGTATCTTCCTTTGCCCCCTTGTGATAGTATGTTTGTGTAT
GTGTGTGTCCTGTATGTTCATGTGTGTACCCCAATGTACTTACAAACTATTTAAGCTCAGAAGC
ATAAGCATTTTTTTTTCA

hide sequence

RefSeq Acc Id:

XM_006233593 ⟹ XP_006233655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,360 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,151,075 - 7,172,259 (+)	NCBI
Rnor_6.0	3	1,492,481 - 1,515,094 (+)	NCBI
Rnor_5.0	3	1,471,271 - 1,507,922 (+)	NCBI

Sequence:

show sequence

GGAGGGTTATGTGTCACGGTGGTGAGGGGAGCGGAAGTCGGAAGCTTCAGTCGCCACATTTGCA
GGCGGGGAACCATGCAGCAGTAAGTTCCTGGGGCAGGGGAACGGATCAGGAGAGCCTGAAGGCT
AGATGTGGATTTCCAGTTCCTACCTTGGCTTGTGGACCTAATAATTCATGAAATGGGATTGTGA
AAACAGGTGCTACCAAGGGCTTCTGCTCAACTGTCACTCTGTGGATGATGGGGGACCACCTCAG
ACCCATGGAATTTCTCAATATTTGCTTGGAAGACAACCTACAGCCCCATCCAGAAGCATATCCA
AGTGAAGTGCATGGCCATCCGGGCCCTTCTGAACCTTGCCAGGAACATACTTGGCCATTTGACC
CCCCTGAATCTGCCAGGCCTGATGCTCATCATGGCGACTCTGATGTGGAACCCAGTCACCTGGG
AAACCGCCTGGTGCATGGGGAGGCCAGCCAGGCCCCAGCATCATCGAGGTCACTAGAGGACAAC
AGCTCTCTGGGGAGTCCACAGCAGAACCGGAGCTCATCCACCCAGGTGGTATTCTGGGCTGGCA
TCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTAGAGAAAACAGAGGGACTCAA
AGCAGGACTCAGATGCTGTATTCCACCGCCCTCTAAGGACTTCCTTGGTGATGTGGGCCTGAAA
CCCAGTCGGCCCAAGGAGGATGAAGACTCTGGGGATGACAGCAGTGGGTCTGAGGAAGAGAACC
AGACCTGGCCAAAGAAGAAAATGCCAGGCTCCTCCCCAGAGTGGGGTGCTGAGGAGGACAGCAT
CTTCTTTGATAATCCCCTCTTCCTGGAAAGCCCTTGCTCAGACACCAGCACTGAAGGAGAATGC
TTTTCCTGGGGCTACCCGAATTCCCACCTAGATATGAAGACCTGGCCTCATAGGCCTCAAACCC
TGGATTCTCCTCTCCAAGAAGGCACAGGGCTCTGGACGCAAGAAAATGATCTGGATTTGGGGAG
CAACACTGCTGACCATAGTAGGTGCTCCACCCCTCCATTCCCTGTGCCTTCCTATAAGATGCAC
CCCTGCTTGGCCTTAGGATCCACTGAAGGAGCTCCCATAGTACCTCCTGATCAGACTTCTTGGG
AAGATGATGTTGGCCCTGGCTCACCTAAAGCACCCTCTGTAGACCATGAATTGATCCAGGAATC
AGATAACTTTGGATCTGACCTTAGACCTGCCACAACACATCCTGTACAGCCTTGGGGCTCACAG
ATACCCCAAAGCCTTTCTGACCTGGCCCCACCCTTACATGAGGACCTGCAGGATCCTTCCAGGC
CCCAGAAGCCTCTTATCTCCCAGAACGGAGGTGAGAGGGATGCTGGCTGTTTCCAGGAGCCCAT
GCTCTGCACCTTGGCCCCCTGGGGGAGCCAAGCATCTTTACTGGAGCCTAGCTGCCCAGAATCT
GGGGGCAGAGGCTCTGGACCCCGGCCCAGTCCTGTGTCTTCTCAGGAGAGCAGTCCACAGGATC
AGCTCCATAGCCTCAAGTGGCCACAAGATACCTCACACCCTTCGCTCCTGGAGAAGGATAAATC
AGAATTGAGTTCCCTGAAGAAAGATGAGACAGAGGAAGTCCCAAGCCTGATGCAGGAGGCAGAG
TGTGAAGATACATCCAGAAGTGAAGATGCTTCAGTCACCGAGCACCATGTTCACTTGGCTTCTG
CAGAAGGACTTCCTGAGAGCCCCATGCCCCCAGAGGAAGCTCAATCCCCAGAGGAAGACTGGAG
GCCATCACCATCTAGAGAGAAGATGGCTAATAGCATCAGAAATGACGAGGGGGCTTGGAACCTA
GCCTTGCGCCTCTATCAACTGAATGGTTTTCGGAAGTCCGAAGTGGCTGCACACCTTCGCAAGA
ACAATGACTTCAGCAGGGCTGTAGCCGAGGCCTACTTGTCCTTCTTCCAGTTCGAAGGTCAGAG
CCTGGACCGAGCCCTCCGTGGTTTCCTCCAGGCCCTGGTGCTCAGTGGAGAGACTCAGGAGCGG
GAACGAATTCTCTACCAATTTTCCAAACGCTTCCATTACTGCAATCCTGGAGCCTTCCCCTCAG
TAGATTCTGTACACACCTTGACCTGTGCAATTATGCTCCTTAACACAGACTTACATGGACAGAA
CATTGGAAAGAGCATGAGCTGTCAGGAATTTGTAACCAACCTGAATGGCCTGCAGGATGGTGGA
AACTTCCCCAAAGAGCTGCTGAAGGCTCTCTACTGGTCTATCCGAAGTGAGAAGCTTGAGTGGG
CTGTAGATGAAGAAGATGCAGCCAGACCTGAGAAAGACCAGCCCTCTCCCTCAGCTGGCAAGAT
AAGCAGCCCCTTCCTGCAGTTGGCTCAGGACCCCACGATGCCCACCTATAAGCAGGGTATCCTG
GCACGGAAGATGCATCATGATGCTGATGGCAAGAAGACACCATGGGGCAAACGAGGCTGGAAGA
TGTTTCACACCTTACTGAGAGGGATGGTGCTCTACTTCCTGAAGGGAGAGGGCCAGTGGCTGGA
TGGGGAGAGTTTGGTTGGACATATGATGGATGAACCTGTGGGAGTGCACCACTCGCTAGCCAGC
CCAGCCACCCACTACACCAAGAAGCCACATGTCTTCCAGCTTCGGACTGCAGACTGGCGTCTCT
ACCTCTTCCAGGCACCCACGGCCAAAGAAATGGCTTCCTGGATTGCACGAATCAACCTGGCGGC
TGCCACACACTCAGCACCTCCCTTTCCAGCTGCAGTGGGCTCCCAGCGCAGATTCGTGAGGCCC
ATCCTGCCCATGGGCCCAGCGCAGAGCTCCCTGGAGGAGCAGCATCGATCCCACGAGAACTGCC
TGGATGCTGCCTCAGATGACCTGTTGGATTTGCAGAGAAACCTGCCAGAGCGAAGGGGCCGCAG
CCGCGAGTTGGAGGAGTACCGCTTACGGAAGGAGTATCTGGAGCACGAGAAAACTCGATATGAG
ACGTACGTGCAGCTTCTGGTGGCCCGCCTACACTTCCCTCTGAAAGACCTGGCTTTGTGGGAAG
ATCAGCTTGGGAACGAAGCTGATAGTTGTCAGGAGCCCAGGCCAAGCCTGAAGAAGTCCCACTC
AAGCCCATCCCTGCACCAGGATGAGGCCCCCACCACAGCCAAGGTGAAACGTAACATCTCAGAG
CGCAGAACCTACCGGAAGATCATTCCCAAGAGGAACCGCAACCAGCTGTGAAGCTGTCGCCCTC
TCAGATACTGACTCCGGGGTAGACCTGAGATGCAGCCTTATGTGCCAGGACCATGGTGAAGGAT
GAGGCATCTGTGCCTCTGTACTGAAGGATGGGGCTCATTTCCCTGTGTCCCCATTCCTGGCTCT
TCAGAGATTAAGGTTGAGTGAGGCAGTCCTCTCTCCTCTAAGACACGGGGCCTGGGTTTCTGAG
ATGGCCTGAGGCAGTCTAACCAAGACTGCTCACTGGGGACAATCTTACTTTGGGAGTTAGGTGA
CCTGGCAGAAGTTGGTCCCCAAAGCATAGAACAGGACCTCTTGGAAATTCCTAAGCAGCATCTT
GTGACCTAGGAAGCAGGGTTACTCTAGCCCAGTAGAGCACAGCCTTCTACCAGACTCCTTGGCA
GGTTCAGGGCTCAGGGATACCGTGGGGCACCGAGCTTCTGGTCTTCTGGCTGCTTTATCCTGCA
AACATAAGAGGGCTGCATGCCTAATTGTTAATCAGCAGAGCAGAGCTGTGGCCTGGGCCAGGCT
CAATAGGAGTGGGGGGTGGCTCTAGAGGTCTGTGGAGAACACTTGGAACAAGGAGTGTTTGTTT
CCTGAGAGTAATGAGGGTAGCATTTCTAGGGTAGACCACTGTGGAGGGAGAGGGGGTGAACATG
GTGACAGTTCTCCTTGGGAGTCTGCCTGGCAGTGCAAGTAGAGATTGGAGGCCTGGGTTCTCAC
TGCCTTCTGTAGCCACCCCCACCCCACCTCCACCCTCAATACCCCTCAACACTGCATTCCTGAG
GGATGTCAGGACCTATTTCTCATTCCCAGGGCAGCTCCCAGACCTTTGCTGCCCTGCCTTGGGA
AATCCCCTTGGACTTCTCTTTTGGCTTCTTCCCAGGTATGCCTGTTCTCTAGGGGAGGCCCTGG
AGACTCAGGGACTGGGGCTGTGCCTGTGAGGAGGAGGCTGGCTTGGGGGAGCAGCCACATTGTC
TCTGTTCAGCCATGTGTGCAAAGAGGCTTCTGGCCAACTGGGAGCCTCTGCTGCTCACCCTTTA
GCTGACACGTTGCCTCTCCTGCTTCCTGCTGGGTCACACATCCTCCCTTCAATAATGCTTGTAG
CAACTCTAAGCCCTTAGAGCTCCACAAAGTGGAGCTGGTTCTTAGCGCCAGGGAACTCTTTGAC
TAGGGCCTGGGGCTGGCCCTTGCACCCAATGGGTGTGCAATAAATAGAACCTACCAAAGAAACG
TGCGTATGTGTGTGCGCATGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTAAGGGGGAGTCAGTCAGGTAGCCTTGGCCACCTACAGTGTGTCAGGCTGTATCTT
CCTTTGCCCCCTTGTGATAGTATGTTTGTGTATGTGTGTGTCCTGTATGTTCATGTGTGTACCC
CAATGTACTTACAAACTATTTAAGCTCAGAAGCATAAGCATTTTTTTTTCA

hide sequence

RefSeq Acc Id:

XM_039105177 ⟹ XP_038961105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,174 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,150,886 - 7,173,486 (+)	NCBI

RefSeq Acc Id:

XM_039105178 ⟹ XP_038961106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,174 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,150,886 - 7,173,486 (+)	NCBI

RefSeq Acc Id:

XM_039105179 ⟹ XP_038961107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,358 - 27,571,765 (+)	NCBI
mRatBN7.2	3	7,151,073 - 7,172,181 (+)	NCBI

RefSeq Acc Id:

XM_039105180 ⟹ XP_038961108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,549,358 - 27,565,137 (+)	NCBI
mRatBN7.2	3	7,151,073 - 7,166,857 (+)	NCBI

RefSeq Acc Id:

XM_063283915 ⟹ XP_063139985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,535,359 - 27,571,765 (+)	NCBI

RefSeq Acc Id:

XM_063283916 ⟹ XP_063139986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	27,564,567 - 27,571,765 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128353	(Get FASTA)	NCBI Sequence Viewer
	NP_001421125	(Get FASTA)	NCBI Sequence Viewer
	XP_006233653	(Get FASTA)	NCBI Sequence Viewer
	XP_006233654	(Get FASTA)	NCBI Sequence Viewer
	XP_006233655	(Get FASTA)	NCBI Sequence Viewer
	XP_038961105	(Get FASTA)	NCBI Sequence Viewer
	XP_038961106	(Get FASTA)	NCBI Sequence Viewer
	XP_038961107	(Get FASTA)	NCBI Sequence Viewer
	XP_038961108	(Get FASTA)	NCBI Sequence Viewer
	XP_063139985	(Get FASTA)	NCBI Sequence Viewer
	XP_063139986	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008161
	ENSRNOP00000008161.3
	ENSRNOP00000087791
	ENSRNOP00000087791.1

RefSeq Acc Id:

NP_001128353 ⟸ NM_001134881

- UniProtKB:

D3ZPP3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMGDHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEHTWPFDPPESARPDAHHGDSD
VEPSHLGNRLVHGEASQAPASSRSLEDNSSLGSPQQNRSSSTQVVFWAGILQAQMCVLDLEEEL
EKTEGLKAGLRCCIPPPSKDFLGDVGLKPSRPKEDEDSGDDSSGSEEENQTWPKKKMPGSSPEW
GAEEDSIFFDNPLFLESPCSDTSTEGECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQE
NDLDLGSNTADHSRCSTPPFPVPSYKMHPCLALGSTEGAPIVPPDQVGETSWEDDVGPGSPKAP
SVDHELIQESDNFGSDLRPATTHPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGE
RDAGCFQEPMLCTLAPWGSQASLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTS
HPSLLEKDKSELSSLKKDETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAEGLPESPMPPE
EAQSPEEDWRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAY
LSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIM
LLNTDLHGQNIGKSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAARPEK
DQPSPSAGKISSPFLQLAQDPTMPTYKQGILARKMHHDADGKKTPWGKRGWKMFHTLLRGMVLY
FLKGEGQWLDGESLVGHMMDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMA
SWIARINLAAATHSAPPFPAAVGSQRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQ
RNLPERRGRSRELEEYRLRKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQE
PRPSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL

hide sequence

RefSeq Acc Id:	XP_006233654 ⟸ XM_006233592
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGDHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEHTWPFDPPESARPDAHHGDSD VEPSHLGNRLVHGEASQAPASSRSLEDNSSLGSPQQNRSSSTQVVFWAGILQAQMCVLDLEEEL EKTEGLKAGLRCCIPPPSKDFLGDVGLKPSRPKEDEDSGDDSSGSEEENQTWPKKKMPGSSPEW GAEEDSIFFDNPLFLESPCSDTSTEGECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQE NDLDLGSNTADHSRCSTPPFPVPSYKMHPCLALGSTEGAPIVPPDQVGETSWEDDVGPGSPKAP SVDHELIQESDNFGSDLRPATTHPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGE RDAGCFQEPMLCTLAPWGSQASLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTS HPSLLEKDKSELSSLKKDETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAEGLPESPMPPE EAQSPEEDWRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAY LSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIM LLNTDLHGQNIGKSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAARPEK DQPSPSAGKISSPFLQLAQDPTMPTYKQGILARKMHHDADGKKTPWGKRGWKMFHTLLRGMVLY FLKGEGQWLDGESLVGHMMDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMA SWIARINLAAATHSAPPFPAAVGSQRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQ RNLPERRGRSRELEEYRLRKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQE PRPSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL hide sequence

RefSeq Acc Id:

XP_006233653 ⟸ XM_006233591

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMGDHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEHTWPFDPPESARPDAHHGDSD
VEPSHLGNRLVHGEASQAPASSRSLEDNSSLGSPQQNRSSSTQVVFWAGILQAQMCVLDLEEEL
EKTEGLKAGLRCCIPPPSKDFLGDVGLKPSRPKEDEDSGDDSSGSEEENQTWPKKKMPGSSPEW
GAEEDSIFFDNPLFLESPCSDTSTEGECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQE
NDLDLGSNTADHSRCSTPPFPVPSYKMHPCLALGSTEGAPIVPPDQVGETSWEDDVGPGSPKAP
SVDHELIQESDNFGSDLRPATTHPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGE
RDAGCFQEPMLCTLAPWGSQASLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTS
HPSLLEKDKSELSSLKKDETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAEGLPESPMPPE
EAQSPEEDWRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAY
LSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIM
LLNTDLHGQNIGKSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAARPEK
DQPSPSAGKISSPFLQLAQDPTMPTYKQGILARKMHHDADGKKTPWGKRGWKMFHTLLRGMVLY
FLKGEGQWLDGESLVGHMMDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMA
SWIARINLAAATHSAPPFPAAVGSQRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQ
RNLPERRGRSRELEEYRLRKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQE
PRPSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL

hide sequence

RefSeq Acc Id:	XP_006233655 ⟸ XM_006233593
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7Y6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGDHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEHTWPFDPPESARPDAHHGDSD VEPSHLGNRLVHGEASQAPASSRSLEDNSSLGSPQQNRSSSTQVVFWAGILQAQMCVLDLEEEL EKTEGLKAGLRCCIPPPSKDFLGDVGLKPSRPKEDEDSGDDSSGSEEENQTWPKKKMPGSSPEW GAEEDSIFFDNPLFLESPCSDTSTEGECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQE NDLDLGSNTADHSRCSTPPFPVPSYKMHPCLALGSTEGAPIVPPDQTSWEDDVGPGSPKAPSVD HELIQESDNFGSDLRPATTHPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGERDA GCFQEPMLCTLAPWGSQASLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTSHPS LLEKDKSELSSLKKDETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAEGLPESPMPPEEAQ SPEEDWRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAYLSF FQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIMLLN TDLHGQNIGKSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAARPEKDQP SPSAGKISSPFLQLAQDPTMPTYKQGILARKMHHDADGKKTPWGKRGWKMFHTLLRGMVLYFLK GEGQWLDGESLVGHMMDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWI ARINLAAATHSAPPFPAAVGSQRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQRNL PERRGRSRELEEYRLRKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQEPRP SLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL hide sequence

Ensembl Acc Id:

ENSRNOP00000008161 ⟸ ENSRNOT00000008161

RefSeq Acc Id:	XP_038961105 ⟸ XM_039105177
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961106 ⟸ XM_039105178
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961107 ⟸ XM_039105179
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961108 ⟸ XM_039105180
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000087791 ⟸ ENSRNOT00000099515

RefSeq Acc Id:	XP_063139985 ⟸ XM_063283915
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7Y6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139986 ⟸ XM_063283916
- Peptide Label:	isoform X5

Protein Domains

PH SEC7

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZPP3-F1-model_v2	AlphaFold	D3ZPP3	1-1007	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691849

Promoter ID:

EPDNEW_R2374

Type:

multiple initiation site

Name:

Psd4_1

Description:

pleckstrin and Sec7 domain containing 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	1,478,441 - 1,478,501	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310289	AgrOrtholog
BioCyc Gene	G2FUF-50506	BioCyc
Ensembl Genes	ENSRNOG00000006079	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008161	ENTREZGENE
	ENSRNOT00000008161.6	UniProtKB/TrEMBL
	ENSRNOT00000099515	ENTREZGENE
	ENSRNOT00000099515.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1000.11	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	PH_9	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Sec7	UniProtKB/TrEMBL
	SEC7_alpha_orthog	UniProtKB/TrEMBL
	Sec7_sf	UniProtKB/TrEMBL
	Spectrin_PH	UniProtKB/TrEMBL
KEGG Report	rno:311785	UniProtKB/TrEMBL
NCBI Gene	311785	ENTREZGENE
PANTHER	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	UniProtKB/TrEMBL
	PH AND SEC7 DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	PH_9	UniProtKB/TrEMBL
	Sec7	UniProtKB/TrEMBL
PhenoGen	Psd4	PhenoGen
PRINTS	SPECTRINPH	UniProtKB/TrEMBL
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	SEC7	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006079	RatGTEx
SMART	Sec7	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Sec7	UniProtKB/TrEMBL
UniProt	A0A8I6A7Y6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZPP3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Psd4	pleckstrin and Sec7 domain containing 4	Psd4_predicted	pleckstrin and Sec7 domain containing 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Psd4_predicted	pleckstrin and Sec7 domain containing 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)