Galnt16 (polypeptide N-acetylgalactosaminyltransferase 16) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Galnt16 (polypeptide N-acetylgalactosaminyltransferase 16) Rattus norvegicus
Analyze
Symbol: Galnt16
Name: polypeptide N-acetylgalactosaminyltransferase 16
RGD ID: 1310202
Description: Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 4,4'-sulfonyldiphenol; atrazine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Galntl1; LOC362760; polypeptide N-acetylgalactosaminyltransferase-like 1; putative polypeptide N-acetylgalactosaminyltransferase-like protein 1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86105,900,987 - 105,982,039 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6105,901,153 - 105,991,350 (+)EnsemblGRCr8
mRatBN7.26100,168,943 - 100,250,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6100,336,375 - 100,417,637 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06100,636,070 - 100,717,332 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06100,010,595 - 100,091,583 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06104,069,853 - 104,250,177 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)Ensemblrn6Rnor6.0
Rnor_5.06112,245,665 - 112,422,114 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46104,285,081 - 104,366,257 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera698,028,274 - 98,109,010 (+)NCBICelera
RGSC_v3.16104,288,214 - 104,369,709 (+)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,4-D  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fenvalerate  (EXP)
fructose  (ISO)
furan  (EXP)
gentamycin  (EXP)
glucose  (ISO)
hydroxyurea  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
malathion  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (EXP)
N-methyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP,ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22186971   PMID:23376485  


Genomics

Comparative Map Data
Galnt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86105,900,987 - 105,982,039 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6105,901,153 - 105,991,350 (+)EnsemblGRCr8
mRatBN7.26100,168,943 - 100,250,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6100,336,375 - 100,417,637 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06100,636,070 - 100,717,332 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06100,010,595 - 100,091,583 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06104,069,853 - 104,250,177 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)Ensemblrn6Rnor6.0
Rnor_5.06112,245,665 - 112,422,114 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46104,285,081 - 104,366,257 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera698,028,274 - 98,109,010 (+)NCBICelera
RGSC_v3.16104,288,214 - 104,369,709 (+)NCBI
Cytogenetic Map6q24NCBI
GALNT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381469,259,631 - 69,386,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1469,259,277 - 69,357,033 (+)Ensemblhg38GRCh38
GRCh371469,726,875 - 69,823,759 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361468,796,668 - 68,890,936 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1449,790,817 - 49,885,331 (+)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1449,956,243 - 49,989,939 (+)NCBIHuRef
HuRef1449,897,361 - 49,897,652 (+)NCBIHuRef
CHM1_11469,664,834 - 69,759,335 (+)NCBICHM1_1
T2T-CHM13v2.01463,472,675 - 63,600,865 (+)NCBIT2T-CHM13v2.0
Galnt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,565,245 - 80,650,672 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,565,051 - 80,677,746 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381280,518,471 - 80,603,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,518,277 - 80,630,972 (+)Ensemblmm10GRCm38
MGSCv371281,619,977 - 81,704,883 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361281,437,125 - 81,522,744 (+)NCBIMGSCv36mm8
Celera1281,984,033 - 82,069,080 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.79NCBI
Galnt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554661,016,535 - 1,044,082 (-)Ensembl
ChiLan1.0NW_0049554661,016,580 - 1,044,077 (-)NCBIChiLan1.0ChiLan1.0
GALNT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21570,381,627 - 70,478,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11469,598,395 - 69,692,870 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01449,851,234 - 49,945,968 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11468,785,858 - 68,819,572 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1468,781,620 - 68,819,572 (+)EnsemblpanPan2panpan1.1
GALNT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1843,099,717 - 43,189,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl843,042,563 - 43,187,969 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha842,786,236 - 42,879,471 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0843,326,601 - 43,420,086 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl843,329,200 - 43,422,845 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1842,941,024 - 43,034,591 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0843,015,759 - 43,108,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0843,375,070 - 43,468,317 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Galnt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864061,607,794 - 61,694,423 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649512,497,794 - 12,583,882 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649512,496,743 - 12,583,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl792,929,069 - 93,041,442 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1792,928,834 - 93,041,446 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2799,153,542 - 99,263,627 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12446,497,879 - 46,608,432 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2446,497,915 - 46,594,679 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605334,722,971 - 34,821,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473431,717,126 - 31,804,452 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473431,717,210 - 31,803,365 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Galnt16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1794,734,428 - 94,826,522 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Galnt16
692 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:737
Count of miRNA genes:276
Interacting mature miRNAs:349
Transcripts:ENSRNOT00000006460
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
D6Rat192  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86105,967,637 - 105,967,845 (+)Marker Load Pipeline
mRatBN7.26100,236,312 - 100,236,520 (+)MAPPERmRatBN7.2
Rnor_6.06104,235,777 - 104,235,984NCBIRnor6.0
Rnor_5.06112,407,714 - 112,407,921UniSTSRnor5.0
RGSC_v3.46104,351,856 - 104,352,064RGDRGSC3.4
RGSC_v3.46104,351,857 - 104,352,064UniSTSRGSC3.4
Celera698,094,622 - 98,094,819UniSTS
RGSC_v3.16104,355,313 - 104,355,520RGD
RH 3.4 Map6727.9UniSTS
RH 3.4 Map6727.9RGD
RH 2.0 Map6931.9RGD
SHRSP x BN Map659.0098RGD
Cytogenetic Map6q24UniSTS
BF406334  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86105,907,087 - 105,907,264 (+)Marker Load Pipeline
mRatBN7.26100,175,755 - 100,175,932 (+)MAPPERmRatBN7.2
Rnor_6.06104,076,745 - 104,076,921NCBIRnor6.0
Rnor_5.06112,251,451 - 112,251,627UniSTSRnor5.0
RGSC_v3.46104,290,669 - 104,290,845UniSTSRGSC3.4
Celera698,033,665 - 98,033,841UniSTS
RH 3.4 Map6716.4UniSTS
Cytogenetic Map6q24UniSTS
AW526869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26100,170,429 - 100,170,613 (+)MAPPERmRatBN7.2
Rnor_6.06104,071,419 - 104,071,602NCBIRnor6.0
Rnor_5.06112,246,125 - 112,246,308UniSTSRnor5.0
RGSC_v3.46104,285,343 - 104,285,526UniSTSRGSC3.4
Celera698,028,336 - 98,028,519UniSTS
RH 3.4 Map6717.0UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 157 91 90 59 67 59 6 322 167 11 136 72 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006460   ⟹   ENSRNOP00000006460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6105,901,153 - 105,982,038 (+)Ensembl
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)Ensembl
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157094   ⟹   ENSRNOP00000105663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6105,901,153 - 105,991,350 (+)Ensembl
RefSeq Acc Id: NM_001100863   ⟹   NP_001094333
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86105,901,700 - 105,982,039 (+)NCBI
mRatBN7.26100,170,368 - 100,250,716 (+)NCBI
Rnor_6.06104,071,357 - 104,250,177 (+)NCBI
Rnor_5.06112,245,665 - 112,422,114 (+)NCBI
Celera698,028,274 - 98,109,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240288   ⟹   XP_006240350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86105,900,987 - 105,982,039 (+)NCBI
mRatBN7.26100,168,943 - 100,250,718 (+)NCBI
Rnor_6.06104,069,853 - 104,250,177 (+)NCBI
Rnor_5.06112,245,665 - 112,422,114 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001094333 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240350 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91351 (Get FASTA)   NCBI Sequence Viewer  
  EDL81381 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006460
  ENSRNOP00000006460.5
  ENSRNOP00000105663.1
RefSeq Acc Id: NP_001094333   ⟸   NM_001100863
- UniProtKB: F1LQN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240350   ⟸   XM_006240288
- Peptide Label: isoform X1
- UniProtKB: F1LQN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006460   ⟸   ENSRNOT00000006460
Ensembl Acc Id: ENSRNOP00000105663   ⟸   ENSRNOT00000157094
Protein Domains
Ricin B lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LQN1-F1-model_v2 AlphaFold F1LQN1 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310202 AgrOrtholog
BioCyc Gene G2FUF-36911 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000004589 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006460 ENTREZGENE
  ENSRNOT00000006460.9 UniProtKB/TrEMBL
  ENSRNOT00000157094.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317097 IMAGE-MGC_LOAD
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:362760 UniProtKB/TrEMBL
MGC_CLONE MGC:109380 IMAGE-MGC_LOAD
NCBI Gene 362760 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 16 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PhenoGen Galnt16 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004589 RatGTEx
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0ABK0LL57_RAT UniProtKB/TrEMBL
  F1LQN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt16  polypeptide N-acetylgalactosaminyltransferase 16  Galnt16  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-31 Galnt16  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16  Galntl1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Galntl1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1  Galntl1_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Galntl1_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED