Ptrh1 (peptidyl-tRNA hydrolase 1 homolog) - Rat Genome Database

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Gene: Ptrh1 (peptidyl-tRNA hydrolase 1 homolog) Rattus norvegicus
Analyze
Symbol: Ptrh1
Name: peptidyl-tRNA hydrolase 1 homolog
RGD ID: 1310165
Description: Predicted to enable peptidyl-tRNA hydrolase activity. Predicted to be involved in rescue of stalled ribosome. Orthologous to human PTRH1 (peptidyl-tRNA hydrolase 1 homolog); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362113; peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae); probable peptidyl-tRNA hydrolase; RGD1310165
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,462,575 - 36,475,605 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,462,575 - 36,476,139 (+)EnsemblGRCr8
mRatBN7.2316,064,867 - 16,071,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,064,880 - 16,070,648 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx319,133,166 - 19,134,953 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,718,173 - 27,719,960 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,969,984 - 25,971,771 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,811,303 - 11,817,007 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,811,962 - 11,825,640 (+)Ensemblrn6Rnor6.0
Rnor_5.0317,148,898 - 17,153,915 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,733,944 - 11,764,375 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera310,803,957 - 10,809,598 (+)NCBICelera
RGSC_v3.1311,646,663 - 11,648,159 (+)NCBI
Cytogenetic Map3p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:22658674   PMID:34800366  


Genomics

Comparative Map Data
Ptrh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,462,575 - 36,475,605 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,462,575 - 36,476,139 (+)EnsemblGRCr8
mRatBN7.2316,064,867 - 16,071,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,064,880 - 16,070,648 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx319,133,166 - 19,134,953 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,718,173 - 27,719,960 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,969,984 - 25,971,771 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,811,303 - 11,817,007 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,811,962 - 11,825,640 (+)Ensemblrn6Rnor6.0
Rnor_5.0317,148,898 - 17,153,915 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,733,944 - 11,764,375 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera310,803,957 - 10,809,598 (+)NCBICelera
RGSC_v3.1311,646,663 - 11,648,159 (+)NCBI
Cytogenetic Map3p11NCBI
PTRH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,694,150 - 127,715,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,690,348 - 127,724,873 (-)Ensemblhg38GRCh38
GRCh379130,475,942 - 130,477,955 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,516,048 - 129,517,757 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349127,555,780 - 127,557,490NCBI
Celera9101,127,119 - 101,128,828 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,092,340 - 100,094,049 (-)NCBIHuRef
CHM1_19130,627,408 - 130,629,117 (-)NCBICHM1_1
T2T-CHM13v2.09139,901,102 - 139,922,631 (-)NCBIT2T-CHM13v2.0
Ptrh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,665,760 - 32,667,609 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,665,798 - 32,667,609 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38232,775,748 - 32,778,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,775,786 - 32,777,597 (+)Ensemblmm10GRCm38
MGSCv37232,631,341 - 32,633,113 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36232,597,830 - 32,599,602 (+)NCBIMGSCv36mm8
Celera232,482,678 - 32,484,450 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Ptrh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419940,508 - 942,375 (+)Ensembl
ChiLan1.0NW_004955419940,508 - 942,375 (+)NCBIChiLan1.0ChiLan1.0
PTRH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,640,104 - 11,663,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,642,451 - 11,665,962 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0998,813,010 - 98,835,732 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,504,457 - 127,507,753 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,484,509 - 127,507,753 (-)EnsemblpanPan2panpan1.1
PTRH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,676,605 - 55,678,442 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,676,622 - 55,678,434 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha954,869,493 - 54,871,658 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0956,597,742 - 56,599,903 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,598,083 - 56,599,650 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,357,980 - 55,360,141 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,672,691 - 55,674,856 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,763,933 - 55,766,100 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptrh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,621,075 - 195,622,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,386,768 - 15,391,384 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,389,607 - 15,392,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTRH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,213,687 - 268,215,523 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11268,213,685 - 268,215,498 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,105,647 - 302,107,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTRH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,417,096 - 10,418,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,416,855 - 10,418,778 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660795,801,994 - 5,805,139 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptrh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,819,816 - 7,821,412 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247607,819,765 - 7,823,011 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ptrh1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v152,858,813 - 2,865,811 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ptrh1
197 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:148
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000039151, ENSRNOT00000060258
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
AI326233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,078,026 - 16,078,111 (+)MAPPERmRatBN7.2
Rnor_6.0311,825,081 - 11,825,165NCBIRnor6.0
Rnor_5.0317,162,051 - 17,162,135UniSTSRnor5.0
RGSC_v3.4311,763,402 - 11,763,486UniSTSRGSC3.4
Celera310,817,614 - 10,817,698UniSTS
Cytogenetic Map3p11UniSTS
D45903  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,076,943 - 16,077,048 (+)MAPPERmRatBN7.2
Rnor_6.0311,823,998 - 11,824,102NCBIRnor6.0
Rnor_5.0317,160,968 - 17,161,072UniSTSRnor5.0
RGSC_v3.4311,762,319 - 11,762,423UniSTSRGSC3.4
Celera310,816,531 - 10,816,635UniSTS
Cytogenetic Map3p11UniSTS
RH132924  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,070,834 - 16,071,052 (+)MAPPERmRatBN7.2
Rnor_6.0311,817,889 - 11,818,106NCBIRnor6.0
Rnor_5.0317,154,859 - 17,155,076UniSTSRnor5.0
RGSC_v3.4311,756,210 - 11,756,427UniSTSRGSC3.4
Celera310,810,472 - 10,810,689UniSTS
RH 3.4 Map372.4UniSTS
Cytogenetic Map3p11UniSTS
RH144623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,072,440 - 16,072,603 (+)MAPPERmRatBN7.2
Rnor_6.0311,819,495 - 11,819,657NCBIRnor6.0
Rnor_5.0317,156,465 - 17,156,627UniSTSRnor5.0
RGSC_v3.4311,757,816 - 11,757,978UniSTSRGSC3.4
Celera310,812,078 - 10,812,240UniSTS
RH 3.4 Map376.1UniSTS
Cytogenetic Map3p11UniSTS
RH141664  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,052,930 - 16,053,134 (+)MAPPERmRatBN7.2
Rnor_6.0311,799,994 - 11,800,197NCBIRnor6.0
Rnor_5.0317,136,964 - 17,137,167UniSTSRnor5.0
RGSC_v3.4311,738,315 - 11,738,518UniSTSRGSC3.4
Celera310,792,506 - 10,792,709UniSTS
RH 3.4 Map372.0UniSTS
Cytogenetic Map3p11UniSTS
Stxbp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,077,599 - 16,077,844 (+)MAPPERmRatBN7.2
Rnor_6.0311,824,654 - 11,824,898NCBIRnor6.0
Rnor_5.0317,161,624 - 17,161,868UniSTSRnor5.0
RGSC_v3.4311,762,975 - 11,763,219UniSTSRGSC3.4
Celera310,817,187 - 10,817,431UniSTS
RH 3.4 Map379.6UniSTS
Cytogenetic Map3p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039151   ⟹   ENSRNOP00000032989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,462,575 - 36,464,414 (+)Ensembl
mRatBN7.2 Ensembl316,064,880 - 16,066,721 (+)Ensembl
Rnor_6.0 Ensembl311,812,001 - 11,813,466 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000060258   ⟹   ENSRNOP00000057009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,462,575 - 36,468,113 (+)Ensembl
mRatBN7.2 Ensembl316,064,880 - 16,070,513 (+)Ensembl
Rnor_6.0 Ensembl311,811,962 - 11,825,640 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113669   ⟹   ENSRNOP00000090980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,064,880 - 16,070,648 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138838   ⟹   ENSRNOP00000106255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,462,575 - 36,476,139 (+)Ensembl
RefSeq Acc Id: NM_001399255   ⟹   NP_001386184
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,462,630 - 36,464,419 (+)NCBI
mRatBN7.2316,064,934 - 16,066,721 (+)NCBI
RefSeq Acc Id: XM_039106183   ⟹   XP_038962111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,462,575 - 36,466,969 (+)NCBI
mRatBN7.2316,064,867 - 16,069,375 (+)NCBI
RefSeq Acc Id: XM_063284072   ⟹   XP_063140142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,462,575 - 36,475,605 (+)NCBI
RefSeq Acc Id: XM_063284074   ⟹   XP_063140144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,462,575 - 36,463,835 (+)NCBI
Ensembl Acc Id: ENSRNOP00000057009   ⟸   ENSRNOT00000060258
Ensembl Acc Id: ENSRNOP00000032989   ⟸   ENSRNOT00000039151
RefSeq Acc Id: XP_038962111   ⟸   XM_039106183
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000090980   ⟸   ENSRNOT00000113669
RefSeq Acc Id: NP_001386184   ⟸   NM_001399255
- UniProtKB: A6JU87 (UniProtKB/TrEMBL),   D3ZI43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140142   ⟸   XM_063284072
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140144   ⟸   XM_063284074
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000106255   ⟸   ENSRNOT00000138838

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8A9-F1-model_v2 AlphaFold F1M8A9 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692005
Promoter ID:EPDNEW_R2519
Type:multiple initiation site
Name:Ptrh1_1
Description:peptidyl-tRNA hydrolase 1 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0311,811,986 - 11,812,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310165 AgrOrtholog
BioCyc Gene G2FUF-50120 BioCyc
Ensembl Genes ENSRNOG00000049034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039151 ENTREZGENE
  ENSRNOT00000039151.8 UniProtKB/TrEMBL
  ENSRNOT00000060258.5 UniProtKB/TrEMBL
  ENSRNOT00000138838.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1470 UniProtKB/TrEMBL
InterPro Pept_tRNA_hydro UniProtKB/TrEMBL
  Pept_tRNA_hydro_CS UniProtKB/TrEMBL
  Pept_tRNA_hydro_sf UniProtKB/TrEMBL
NCBI Gene 362113 ENTREZGENE
PANTHER PEPTIDYL-TRNA HYDROLASE-RELATED UniProtKB/TrEMBL
  PTHR17224 UniProtKB/TrEMBL
Pfam Pept_tRNA_hydro UniProtKB/TrEMBL
PhenoGen Ptrh1 PhenoGen
PROSITE PEPT_TRNA_HYDROL_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049034 RatGTEx
Superfamily-SCOP Pept_tRNA_hydro UniProtKB/TrEMBL
UniProt A0ABK0L7Q7_RAT UniProtKB/TrEMBL
  A6JU87 ENTREZGENE, UniProtKB/TrEMBL
  D3ZI43 ENTREZGENE, UniProtKB/TrEMBL
  F1M8A9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-17 Ptrh1  peptidyl-tRNA hydrolase 1 homolog  Ptrh1  peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ptrh1  peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)   Ptrh1_predicted  peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ptrh1_predicted  peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) (predicted)  RGD1310165_predicted  LOC362113 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310165_predicted  LOC362113 (predicted)  LOC362113_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362113_predicted  LOC362113 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL