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Gene: Srrm2 (serine/arginine repetitive matrix 2) Rattus norvegicus

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Symbol:

Srrm2

Name:

serine/arginine repetitive matrix 2

RGD ID:

1310163

Description:

Predicted to enable C2H2 zinc finger domain binding activity and mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in Cajal body and nuclear speck. Predicted to be part of U2-type catalytic step 2 spliceosome and U2-type precatalytic spliceosome. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 72. Orthologous to human SRRM2 (serine/arginine repetitive matrix 2); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC302969; serine/arginine repetitive matrix protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SRRM2 (serine/arginine repetitive matrix 2)	HGNC	Ensembl, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Srrm2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Srrm2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SRRM2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SRRM2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Srrm2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SRRM2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SRRM2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Srrm2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Srrm2 (serine/arginine repetitive matrix 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SRRM2 (serine/arginine repetitive matrix 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Srrm2 (serine/arginine repetitive matrix 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	srrm2 (serine/arginine repetitive matrix 2)	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	rsr-2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7971	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	CG7971	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	srrm2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	srrm2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	13,320,059 - 13,353,337 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	13,320,059 - 13,353,337 (+)	Ensembl				GRCr8
mRatBN7.2	10	12,815,471 - 12,848,750 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,751 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	17,560,149 - 17,593,313 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,048,938 - 17,082,103 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,548,336 - 12,581,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,128,820 - 13,162,956 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,145,099 - 13,162,343 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	12,948,282 - 12,982,941 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,066,871 - 13,081,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	12,510,616 - 12,543,690 (+)	NCBI		Celera
RGSC_v3.1	10	13,051,311 - 13,084,720 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 72 (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-bromohexadecanoic acid (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

buspirone (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chloroprene (EXP)

chlorpyrifos (EXP,ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

diuron (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

Evodiamine (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

geldanamycin (ISO)

gentamycin (EXP)

glyphosate (EXP)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

imidacloprid (EXP)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

methamphetamine (ISO)

methapyrilene (EXP)

methidathion (ISO)

methimazole (EXP)

nitrates (ISO)

Nutlin-3 (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

PhIP (ISO)

propiconazole (ISO)

quercetin (ISO)

quercitrin (ISO)

rac-lactic acid (ISO)

resveratrol (EXP,ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

tetraphene (ISO)

thiabendazole (EXP)

thimerosal (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (EXP)

tungsten (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

xylitol (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

mRNA splicing, via spliceosome (ISO)

RNA splicing (IEA)

Cellular Component

Cajal body (ISO)

catalytic step 2 spliceosome (ISO)

nuclear speck (ISO)

nucleus (IEA,ISO)

post-spliceosomal complex (ISO)

spliceosomal complex (IEA,ISO)

U12-type catalytic step 2 spliceosome (ISO)

U2-type catalytic step 1 spliceosome (ISO)

U2-type catalytic step 2 spliceosome (ISO)

U2-type precatalytic spliceosome (ISO)

Molecular Function

C2H2 zinc finger domain binding (ISO)

mRNA binding (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	SRRM2, a potential blood biomarker revealing high alternative splicing in Parkinson's disease.	Shehadeh LA, etal., PLoS One. 2010 Feb 8;5(2):e9104. doi: 10.1371/journal.pone.0009104.

Additional References at PubMed

PMID:11991638	PMID:12477932	PMID:17577209	PMID:22658674	PMID:22681889	PMID:28076346	PMID:29361316	PMID:31505169

Genomics

Comparative Map Data

Srrm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	13,320,059 - 13,353,337 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	13,320,059 - 13,353,337 (+)	Ensembl				GRCr8
mRatBN7.2	10	12,815,471 - 12,848,750 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,751 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	17,560,149 - 17,593,313 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,048,938 - 17,082,103 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,548,336 - 12,581,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,128,820 - 13,162,956 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,145,099 - 13,162,343 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	12,948,282 - 12,982,941 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,066,871 - 13,081,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	12,510,616 - 12,543,690 (+)	NCBI		Celera
RGSC_v3.1	10	13,051,311 - 13,084,720 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

SRRM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	2,752,638 - 2,771,412 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	2,752,626 - 2,772,538 (+)	Ensembl			hg38	GRCh38
GRCh37	16	2,802,639 - 2,821,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	2,742,331 - 2,761,414 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	2,742,654 - 2,761,412	NCBI
Celera	16	3,001,895 - 3,020,980 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	2,769,571 - 2,788,653 (+)	NCBI		HuRef
CHM1_1	16	2,802,386 - 2,821,457 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	2,772,853 - 2,791,630 (+)	NCBI		T2T-CHM13v2.0

Srrm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	24,009,501 - 24,043,715 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	24,009,506 - 24,043,715 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	23,790,527 - 23,824,741 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	23,790,532 - 23,824,741 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	23,940,154 - 23,961,708 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	23,530,848 - 23,552,358 (+)	NCBI		MGSCv36	mm8
Celera	17	24,297,071 - 24,319,127 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.07	NCBI

Srrm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	14,482,154 - 14,497,639 (+)	Ensembl
ChiLan1.0	NW_004955442	14,478,350 - 14,498,152 (+)	NCBI	ChiLan1.0	ChiLan1.0

SRRM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	3,257,612 - 3,276,327 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	7,038,665 - 7,057,379 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	1,612,386 - 1,631,177 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	2,865,810 - 2,884,902 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	2,865,810 - 2,884,902 (+)	Ensembl			panPan2	panpan1.1

SRRM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,291,847 - 38,310,624 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	38,291,842 - 38,393,924 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	39,532,055 - 39,550,491 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	38,602,410 - 38,620,868 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	38,602,405 - 38,620,865 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	38,288,079 - 38,306,513 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,260,566 - 38,278,981 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	38,736,665 - 38,755,113 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Srrm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,413,162 - 105,429,336 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	1,280,155 - 1,295,779 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	1,280,104 - 1,296,301 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRRM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,275,288 - 39,293,747 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	39,275,274 - 39,293,741 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	40,613,487 - 40,631,943 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRRM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,570,566 - 2,589,355 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	2,571,109 - 2,585,640 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	28,322,637 - 28,342,292 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srrm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	594,790 - 609,750 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624824	594,203 - 613,225 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Srrm2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	1,099,099 - 1,132,903 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Srrm2
295 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	78
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000006370
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

RH129535

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	12,848,458 - 12,848,670 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,162,665 - 13,162,876	NCBI	Rnor6.0
Rnor_5.0	10	12,982,650 - 12,982,861	UniSTS	Rnor5.0
RGSC_v3.4	10	13,084,446 - 13,084,657	UniSTS	RGSC3.4
Celera	10	12,543,399 - 12,543,610	UniSTS
RH 3.4 Map	10	143.67	UniSTS
Cytogenetic Map	10	q12	UniSTS

BF403722

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	12,840,605 - 12,840,819 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,154,812 - 13,155,025	NCBI	Rnor6.0
Rnor_5.0	10	12,974,797 - 12,975,010	UniSTS	Rnor5.0
RGSC_v3.4	10	13,076,593 - 13,076,806	UniSTS	RGSC3.4
Celera	10	12,535,546 - 12,535,759	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH137181

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	12,848,480 - 12,848,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,162,687 - 13,162,875	NCBI	Rnor6.0
Rnor_5.0	10	12,982,672 - 12,982,860	UniSTS	Rnor5.0
RGSC_v3.4	10	13,084,468 - 13,084,656	UniSTS	RGSC3.4
Celera	10	12,543,421 - 12,543,609	UniSTS
Cytogenetic Map	10	q12	UniSTS

AU049834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	13,328,226 - 13,328,523 (+)	Marker Load Pipeline
mRatBN7.2	10	12,823,638 - 12,823,935 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,137,138 - 13,137,434	NCBI	Rnor6.0
Rnor_5.0	10	12,956,525 - 12,956,821	UniSTS	Rnor5.0
RGSC_v3.4	10	13,059,511 - 13,059,807	UniSTS	RGSC3.4
Celera	10	12,518,669 - 12,518,967	UniSTS
Cytogenetic Map	10	q12	UniSTS

MARC_7863-7864:996688108:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	12,832,285 - 12,833,447 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,146,493 - 13,147,654	NCBI	Rnor6.0
Rnor_5.0	10	12,966,478 - 12,967,639	UniSTS	Rnor5.0
RGSC_v3.4	10	13,068,273 - 13,069,435	UniSTS	RGSC3.4
Celera	10	12,527,351 - 12,528,512	UniSTS
Cytogenetic Map	10	q12	UniSTS

TCEB2_3482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	12,848,707 - 12,849,002 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,162,914 - 13,163,208	NCBI	Rnor6.0
Rnor_5.0	10	12,982,899 - 12,983,193	UniSTS	Rnor5.0
RGSC_v3.4	10	13,084,695 - 13,084,989	UniSTS	RGSC3.4
Celera	10	12,543,648 - 12,543,942	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000091287 ⟹ ENSRNOP00000072307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,320,059 - 13,352,754 (+)	Ensembl
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,167 (+)	Ensembl
Rnor_6.0 Ensembl	10	13,145,099 - 13,162,343 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100880 ⟹ ENSRNOP00000083591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,320,059 - 13,352,508 (+)	Ensembl
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113307 ⟹ ENSRNOP00000086369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,320,059 - 13,352,306 (+)	Ensembl
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,751 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116501 ⟹ ENSRNOP00000078271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,320,059 - 13,350,621 (+)	Ensembl
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,733 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116530 ⟹ ENSRNOP00000086062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,320,059 - 13,353,337 (+)	Ensembl
mRatBN7.2 Ensembl	10	12,815,471 - 12,848,520 (+)	Ensembl

RefSeq Acc Id:

NM_001277154 ⟹ NP_001264083

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,320,059 - 13,353,337 (+)	NCBI
mRatBN7.2	10	12,815,471 - 12,848,750 (+)	NCBI
Rnor_6.0	10	13,128,820 - 13,162,956 (+)	NCBI
Rnor_5.0	10	12,948,282 - 12,982,941 (+)	NCBI
Celera	10	12,510,616 - 12,543,690 (+)	NCBI

Sequence:

show sequence

GCTAAGCGTTGGAGGAGGAGGAGGAGGAGCAGCGGCAGCAGCGGTGGCTCGCCACACTGTTCTC
AGCTGGAATCCATTAGGCCTGGAGGATTTTCGAGAAGAGGAGGCTTGGATATCCTGGAGATAGA
CCCTGGGAGGCAGCGTCTCCCTTTACTAATCCCGGGAGTGCAAAGTACCTCTGGGTTGTCGTTC
TGTCAGTCAGCTACCTGGAAGCTACCTGGAACAGGAATCCGGCATTTTCACATCCTGTTGTTGC
AATGCCACCAGTGTGAGTCCACTGAGGAAGAGCAGGACAAAACGAGGAAAGTTCCTGAAGCACT
TCCTGTGTCTGACCATTGTCCCTCCAACACGCTGTAGTGTGACTTGGGTCTGTAATCAAGCGAA
CGGAAGGGAGGGCAGAAGCCACCAGGCAGACTGTAGACAGGAGCGGTGGTGCCCCCTGGGCACA
GGGCCATGTACAACGGGATCGGGCTGCCGACGCCCCGGGGCAGCGGCACCAACGGCTACGTTCA
GCGCAACCTGTCCCTGGTTCGGGGCCGCCGTGGTGAGCGGCCTGACTACAAGGGAGAGGAGGAA
CTGCGGCGCCTGGAGGCTGCCCTGGTGAAGCGACCTAATCCTGACATCCTGGACCACGAGCGCA
AGCGGCGCGTGGAGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAGCAGGGGTACGAAGA
ACAGCAAATTCAGGAAAAAGTGGCGACCTTTCGACTCATGTTGCTGGAAAAGGATGTGAACCCT
GGGGGCAAAGAAGAAACCCCAGGGCAGAGGCCAGTGGTAACTGAGACCCATCAGTTGGCAGAAC
TGAATGAGAAGAAGAATGAACGACTCCGTGCTGCCTTTGGTATCAGTGATTCCTATGTGGATGG
CAGTTCTTTTGATCCTCAGCGACGTGCTCGAGAAGCTAAGCAAACGGCTCCTGAGCCTCCCAAA
CCATACAGTCTTGTTCGAGAGACCAGCAGTTCTCGATCACCAACTCCAAAGCAAAAGAAGAAGA
AAAAGAAGAAAGATAGAGGACGCAGGTCAGAGAGCAGTTCTCCTCGACGGGAAAGGAAGAAGAG
TTCAAAGAAGAAGAAACACAGGTCAGAATCTGAGTCCAAGAAACGAAAACACAGGTCTCCTACT
CCAAAGAGCAAACGTAAATCAAAAGACAAGAAAAGGAAACGGTCTCGAAGTACAACACCAGCTC
CTAAGAGCCGTCGAGCACATCGGTCAACTTCTGCTGACTCTGCTTCTTCCTCCGATACATCTCG
TAGTCGGTCTCGAAGTGCTGCTGCTAAAATTCATACAACATCCTTGACTGGGCAAAGTCCTCCC
CTTGCTTCAGGGCATCAAGGGGAGGTAGATGCACCTAGTGAACCAGGTGCCACCAACATACAAC
AGCCTAGTAGCCCAGATCCCTCTACAAAGCAATCTAGCAGTCCTTATGAAGACAAAGATAAGAA
GGAGAAATCTGCAGTTCGACCTAGCCCCTCTCCGGAAAGGAGCAGCACAGGGCCAGAACTACCT
GCCCCCACTCCGCTCCTTGTTGAGCAACATGGCGACTCCCCACGACCCCTTGCAGCAATCCCGT
CCAGTCAGGAGCCAGTTAACCCCTCATCTGAGGCTTCCCCAACCCGGGGCTGTTCACCACCTAA
GTCTCCTGAGAAACCTCCCCAGTCATCTTCCTCAGAGAGCTGCCCACCATCCCCTCAACCTACC
AAACTTTCTCGGCATGCCAGCTCTTCTCCTGAAAGTCTTAAACCCACACCAGCTCCTGGGTCCC
GTCGAGAGATTTCTTCTTCACCCACCTCTAAGAATCGCTCACATGGCAGAGCAAAGCGGGATAA
ATCTCATTCTCATACCCCTTCTCATAGAGCAGGGAGGTCTCGTAGTCCTGCCACTAAGAGAGGA
CGATCTCGGTCTAGAACCCCCACCAAGAGAGGTCACTCTAGGTCCCGGTCCCCTCAGTGGCGAA
GGTCACGATCTGCACAGAGGTGGGGAAAATCTAGAAGTCCCCAGAGGCGTGGCCGATCAAGGTC
TCCTCAGAGGCCAGGCTGGTCCAGGAGCAGAAATACCCAGAGAAGAGGCAGGTCTAGGTCAGCA
AGACGAGGCAGATCACATTCTAGATCTCCAGCCACTAGGGGCAGATCCCGATCTAGAACGCCAG
CTAGAAGGGGTAGGTCTCGGTCTAGAACACCTGCCAGGAGGAGATCACGATCCAGAACACCTGC
CAGACGCAGGTCTCGGTCTAGAACACCAGCTCGCCGGGGCCGGTCTAGATCAAGAACACCCACT
AGGCGCAGGTCTAGAACACGATCACCAGTTCGAAGGAGGTCTCGAAGTAGATCGCAAGCCAGGA
GAAGTGGCAGGTCTAGGTCCAGAACACCAGCCAGGAGAAGTGGCAGGTCAAGGTCTAGAACACC
AGCCAGGAGAGGGAGGTCACGGTCTAGAACGCCAGCCAGAAGAAGTGGTCGATCTCGGTCTAGA
ACACCAGCCAGGAGAGGGAGGTCACGGTCCAGAACGCCAGCTCGACGACGATCTCGCAGTAGAA
GTCTTGTGAGACGTGGAAGATCTCACTCTAGAACACCACAAAGAAGAGGACGATCTGGCTCATC
CTCAGAGAGGAAGAACAAATCTAGAACATCACAGAGGAGAAGCAGATCCAACTCAAGCCCAGAA
ATGAAAAAATCTCATGTTTCCTCAAGACGGAGCAGGTCTCTTTCTTCACCAAGATCCAAAGCAA
AATCTTTGAGGCGAAGCCTTTCAGGTTCTTCTCCATGTCCTAAACAAAAGTCACAGACACCAAC
TAGGCGAAGTCGTTCTGGTTCTTCGCCACCTAAACAGAAGTCGAAAACACCACCAAGACAGAGT
CGTTCAAATTCTCCTCAGCCTAAAGTAAAATCTGGAACACCACCAAGATCAGGATCTGTAACAA
ACATGCAGGCTGAAGAATGCTCTACAACACCACAGAGACAGAGCCATTCTGAATCATCACCTGA
TGGTGAGGTGAAATCAAGGACCCCATCAAGACAAAGCTGCTCTGGGTCTTCTCCTCGAGTGAAA
TCTAGCACACCTCCAAGACAGAGCCCATCTAGGTCATCATCTCCACAACCCAAAGTGAAGGCAG
TAATATCACCAAGACGAAGAAGCCATTCTAGCTCCTCTTCTCCAAGTCCTAGTAGAGTGACATC
TAGGACACCTCAGAGAAAAAGCAGATCAGTATCTCCTTGCCCCAAGGTAGACTCTAGATTGTTA
AGACATAGCCGTTCTAGATCCTCCTCACCAGATACCAAAATGGAACTGGGAACGCCACTGAGAC
ACAGTCACTCAGGGTCTACATCACCGTATCCGAAAAGTATGCTCCAGACTCCACCAGATCAAAA
TCTTTCTGGATCAAAGTCACCCTGTCCCCAAAAGTCTAGGGATTCACCAACAGGAAGCTCTGGA
TCTTTTTCCCTCTGTCCAGGTGTAACCCCTAGTAGTATATTACCAGGAGAGAGCAGTTTTAGCT
CCTCATTTGTGCAACAGAAAGGACAATCTCAAACTTGGCCAGACACTTCAAGTCCAGAAGTTAG
GCAGATGCACTTGGAGTCTCCATCGCTGCAGAGCAAATCTCAAACATCTCCTAAGGGTGGTCTT
TCCAGATCTTCATCTCCAGTAACTGAGCTGACAGCCAGATCGCCAGTAAAACAAGATAAAAGTG
AACTATCAACAGATCCAAAGTTGAAGTCAGGAATGTCTCCTGAGCAAAATAAGACTAAACCTGA
CTCTAGCCTATATCCTTTAGTAGACTCTAAATCTCTTCTGGTACAGAGCAGATTGGAGCCTTCT
GAATTAAAAGAGAGACTAGGTTTAATTGAAGAGGATGTTGCATCATCGTGTGTACTAAGAGACA
AATTTAGTCCTACACAGGATAGGCCTGAGTCCTCCACAGTGCTGAAGGACACACCTAGAGTACT
GTTAAAAGAAAGAAGTGGAGCTGGGTCACCTCCAGGCACAAGAGACCAAAAAATTTTGTTGCCT
AATTCAAGTCAAGATGAATTAATGGAAGTAGAAAAATCTGAGCAACCTTTAAGCCAAGTTCTAC
CCACTTTATCTCCAGAACATAAAGAAATGTCTGCAAGTAACTTTGAGTCATCTCCTGAAATAGA
AGAAAGCCCTGCTGTATTGTCTACACTTGATCAAAGCCAGTCACAGCCTTCAAAAGCAGCAGAA
ATCCCTGCAGTAGCTTCATGTTGGGTTGGGCCACAAGTTTCTCCAGAACATAAAGAACTATCTC
ATTCTCCCCCCAGGGACAATAGCTTTGAGTCATTAGAGTTTAGAAACTCAGGCCCTGTTTTAGA
AGTAAATACTGATTTTTCTCCTGAGGTTAAAGAAGAATTGAATGGACCATTCCTTAATCAAACA
GAAACAGATCCATCTCTGGACATGAAAGAACAGTCAACAAGGTCCTCCAGGCGCAGCAGTTCTG
AGTTATCCCCAGAAATAGTGGAAAAGGTAGGAATATTTTCAAGTCAGAGTGTATCTTCACCCCT
ACTTGAGACTGTACAACAAAGAACACCTTCCAGAGAAAGAAGTAGTTCTGTGTCTTCTCCTGAA
CTGAAAGATGGTTTACCCAGAACCCCATCTAGGAGAAGCCGGTCTGGGTCTTCTCCAAGACTTA
GAGATGGGTCTGGGACTCCTTCTAGGCATAGCCTATCTGGATCCTCTCCTGGGATCAAAGAAAC
ACCTCAAACCCCATCCAGGGGACGAAGTGAATGTGACTCTTCTCCAGAACCTAAAGCATTGCCT
CAGACTCCTAGAGCCCGAAGTCATTCTCCATCGTCCCCAGAACGTAATAACAAGAGTGTCACCC
CTCAGAGAGAAAGAAGTGGGTCAGAGTCATCAGTAGAACAGAAAACTCTGACTAGGACCTCCCC
TGGGCAAAGAAGTCGATCTGGGTCTTCCCAAGAGCTTGATGGAAAACCCAGTGTGTCCCCACAA
GAAAGAAGTGAGTCAGACTCTTCTCCAGATTCTAAACCCAAGGCTCGAACTCCTCTCAGACAGA
GAAGCCACTCCGGATCATCTCCAGAGGTTGACAGCAAATCTCGACACTCTCCTAGGCTCAGTAG
GTCTGGCTCATCTCCTGAAATGAAAGAAAAGTCAAGAGTGCTACAGAGGGCTCAAAGCGGTACT
GATTCTTCTCCTGAACACAAGATACCTGCTCCTCGGGCCCTGCCCAGGCGTAGTAGATCAGGTT
CATCAAGCAAAGAGAGAGGCCCTTCCCCTGAAGGAAGCAGTAGTTCTGAGTCTTCTCCAGAGCA
TCCCCCCAAATCCAGAACTGCTCGAAGAGGCTCCAGGTCCTCAGTGGAGCCAAAGACAAAGTCC
CGCACGCCACCTCGACGCCGGAGTTCTCGCTCATCTCCTGAGCTAACCAGGAAGGCTAGAGTCT
CTCGAAGAAGCCGGTCTGCCTCCTCATCACCAGAAACCCGTTCTAGAACTCCACCAAGACGCAG
AAGAAGTCCTTCAGTATCTTCACCAGAGCCAACTGAAAAGTCAAGGTCTTCAAGGAGGAGGCGC
TCAGTTTCTTCTCCCCGTAACAAGACAACTTCAAGGAGAGGCCGGTCTCCTTCACCCAAACCTC
GTGGACTCCAAAGATCCCGATCCCGCTCACGTAGAGAGAAAACCAGAACAACCCGACGTCGAGA
TAGATCTGGATCATCTCAGTCAACATCACGAAGAAGACAGAGGAGCCGGTCTAGGTCACGGGTT
ACTCGGAGACGGAGGGGTGGCTCTGGTTACCATTCAAGATCACCTACAAGACAGGAAAGTTCCC
GAACCTCCTCTAGACGCAGAAGAGGCCGCTCCCGTACACCCCTGACCAGTCGGAAGCGATCTCG
ATCACGCACATCACCAGCTCCTTGGAAGCGCTCTAGATCTCGAGCCTCACCAGCTACTCATCGG
CGATCCAGGTCCAGAACACCCCTGATCAGCCGACGTCGATCCAGATCTCGTACCTCACCCGTGA
GTAGGAGACGGTCAAGGTCAGTGAATAGGCGTAGATCTCGATCAAGAGCATCTCCAGTGAGTCG
AAGGCGATCCAGGTCCAGAACACCACCAGTAACTCGTCGTCGTTCAAGGTCCAGGACACCAACA
ACTCGCCGTCGCTCTCGTTCTAGAACTCCACCAGTGACTCGCAGAAGATCCAGATCCAGGAGTC
CACCAGTAACCAGGAGACGATCTAGAAGCAGAACTTCACCTGTTACAAGAAGAAGATCAAGATC
CAGGACATCCCCAGTCACCCGGAGAAGATCGAGGTCTCGAACATCTCCAGTCACCCGTAGGCGG
TCCCGTTCCCGAACCTCTCCAGTGACAAGACGCCGTTCCAGGTCCCGAACTCCTCCAGCCATTC
GGAGACGCTCTAGGTCTCGGACACCACTGTTGCCACGCAAGCGCTCTCGAAGCCGCTCACCACT
TGCTATCCGCCGCCGTTCTAGGTCTCGTACACCTAGGGCAGCTCGAGGCAAGCGATCTTTAACA
AGATCTCCTCCAGCCATCCGTAGGCGGTCTGCATCTGGAAGTAGTTCTGATCGCTCACGTTCTG
CCACTCCTCCAGCAACAAGGAATCATTCTGGATCTCGGACACCTCCTGTAGCACTTAGTAGCTC
TAGAATGAGCTGTTTTAGTCGTCCTAGCATGTCACCAACTCCTCTTGACCGATGTAGATCACCT
GGAATGCTAGAACCCCTTGGAAGTGCTAGAACACCCATGTCTGTGCTCCAGCAAACTGGTGGCT
CAATGATGGACGGTCCAGGTCCTCGGATTCCTGATCATCCAAGATCATCTGTTCCAGAAAACCA
TGCTCAGTCTAGAATTGCACTTGCCCTGACAGCCATCAGTCTTGGCACTGCCCGGCCACCTCCA
TCCATGTCTGCTGCTGGCCTTGCTGCAAGAATGTCCCAGGTTCCAGCTCCTGTACCTCTCATGA
GCCTCAGAACAGCCCCAGCTGCCAACCTTGCCAGCAGGATTCCAGCAGCATCTGCAGCAGCTAT
GAACCTTGCTAGTGCCAGGACATCTGCTATTCCAGCATCTGTGAACCTTGCCGATTCACGAACA
CCTGCTGCTGCAGCAGCCATGAACTTGGCCAGCCCTAGAACAGCAGTGGCTCCTTCAGCTGTGA
ACCTTGCAGATCCTCGAACCCCTGCAGCTTCAGCTGTGAACCTAGCAGGAGCTAGAACACCAGC
TGCATTAGCAGCTTTGAGTCTCACAGGCTCTGGGACACCTCCAACTGCTGGAAATTATCCCTCC
AGTTCCAGAACACCCCAGGCTCCAACCCCCGCAAACCTGGTGGGTCCTCGATCTGCGCATGGCA
CAGCTCCTGTGAATATTGCTGGCTCTAGAACCCCTGCAGCTTTGGCTCCCACAAATCTCTCCAG
TTCCAGGATGGCTCCAGCATTGTCTGGTGCAAATCTCACCAGTCCCAGGGTGCCCCTTTCTGCT
TATGAGCGTGTCAGTGGCAGAACCTCACCTTTATTGCTTGATCGAGCCAGGTCCAGAACACCAC
CATCTGCCCCAAGCCAGTCTAGAATGACCTCTGAGCGTGAGAGGGCTCCTTCCCCTGCTTCAAG
AATGGTCCAGGCTCCTTCCCAATCTCTTCTCCCTCCTGCACAGGATCGGCCTCGGTCACCTGTG
CCATCTGCTTTTTCAGACCAATCTCGTTCAATTGCCCAGACCACTCCTGTAGCAGGGTCTCAGT
CCCTTTCATCCGGGACTGTAGCAAAGTCCACATCCTCTGCTAGTGACCACAATGGCATGCTTTC
TGGCCCTGCCCCTGGGGTATCCCATGCTGAAGGTGGGGAGCCACATGCCTCTACTGGGGCCCAG
CAGCCTTCTGCATTGGCTGTTCTGCAACCAGCCAAGGAACGTCGGAGCTCTTCCTCCTCTTCAT
CATCATCTAGCTCCTCCTCCTCTTCATCTTCATCTTCGTCATCCTCCTCTTCCTCTGGCTCCAG
TTCTAGTGACTCAGAGGGCTCCAGCCTTCCTGCTCAACCTGAGGTGGCACTGAAAAGGGTTCCC
AGCCCCACCCCAGTCCCAAAGGAGGCTGTTAGAGAGGGACGCCCTCAGGAACCAACCCCGGCCA
AAAGGAAGAGGCGCTCTAGCAGCTCCAGTTCCAGCTCCTCCTCCTCCTCATCCTCCTCCTCTTC
CTCCTCTTCCTCCTCTTCCTCTTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCTTCTTCCTCC
TCTTCCTCCTCCCCCTCCCCTGCTAAGCCTGGCCCTCAGGCATTACCCAAACCTGCAAGCCCCA
AGAAGCCACCCCCTGGCGAGAGGAGGTCTCGCAGTCCTCGGAAGCCAATAGACTCCCTTCGGGA
TTCCCGATCCCTCAGTTACTCACCTGTTGAGCGTCGACAGCCCTCACCCCAACCCTCACCAAGG
GATCAACAGAGCAGTGAGCGGGTTTCCTGGAGAGGCCAGCGAGGGGACAGTCATTCTCCTGGCC
ACAAGAGGAGGAAGGAGACACCTAGTCCCCGGTCTAACCGTCACCGCTCCTCCAGGTCTCCATA
ATCTGGATTCCACACCTCATACTCTGGAGACATGAGTATTCCTCATTTTCCCAGAAGAATCACG
GGAGGAATCTTGTATGCCTTCCCTTGAACCTTGGCAGCATCTTGAGGGGAGAGCTCCCCCCATC
CCCTTTTTTTTGTTCCTGTGAAATGTTGATCTCTGTGAGTTTTTCCTGGTTCATGTGTTTTGGG
GGGGTGGAGTGGGAGGGAATGTTAGTTTAGGGAGGGAAGGGCACAGCTCAGGACATCTAGGATT
GTGATGATCCAGGGAACTAGTCCTCCGAATTCTAGGGTGACTGATGGTTTGGGGACTTGGTAAG
TCAACACGACTTTGAAGAAGGAGCTGAAGTTGGTTGGCCCTGCTGCACCCCCTTAACAAGGTTG
TAAGACCCTCCCCCCCCCAACTTTGTTTCTTAAGGCATTTTGGTTTTTTAAAATCTGTACAGCA
AAAAGCAACTTTTCTGTCAAATAAAAATGAGAAATGAGTTGTCTGTAGACTTTA

hide sequence

RefSeq Acc Id:

XM_039085853 ⟹ XP_038941781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,353,320 (+)	NCBI
mRatBN7.2	10	12,827,087 - 12,848,745 (+)	NCBI

RefSeq Acc Id:

XM_039085854 ⟹ XP_038941782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,353,320 (+)	NCBI
mRatBN7.2	10	12,827,087 - 12,848,733 (+)	NCBI

RefSeq Acc Id:

XM_039085855 ⟹ XP_038941783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,332,083 - 13,353,320 (+)	NCBI
mRatBN7.2	10	12,827,087 - 12,848,733 (+)	NCBI

RefSeq Acc Id:

XM_039085856 ⟹ XP_038941784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,341,249 (+)	NCBI
mRatBN7.2	10	12,827,087 - 12,836,653 (+)	NCBI

RefSeq Acc Id:

XM_063268912 ⟹ XP_063124982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,320,223 - 13,353,320 (+)	NCBI

RefSeq Acc Id:

XM_063268913 ⟹ XP_063124983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,352,159 (+)	NCBI

RefSeq Acc Id:

XM_063268914 ⟹ XP_063124984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,351,305 (+)	NCBI

RefSeq Acc Id:

XM_063268915 ⟹ XP_063124985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,351,308 - 13,353,320 (+)	NCBI

RefSeq Acc Id:

XR_005489792

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,331,554 - 13,351,152 (+)	NCBI
mRatBN7.2	10	12,827,087 - 12,846,615 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264083	(Get FASTA)	NCBI Sequence Viewer
	XP_038941781	(Get FASTA)	NCBI Sequence Viewer
	XP_038941782	(Get FASTA)	NCBI Sequence Viewer
	XP_038941783	(Get FASTA)	NCBI Sequence Viewer
	XP_038941784	(Get FASTA)	NCBI Sequence Viewer
	XP_063124982	(Get FASTA)	NCBI Sequence Viewer
	XP_063124983	(Get FASTA)	NCBI Sequence Viewer
	XP_063124984	(Get FASTA)	NCBI Sequence Viewer
	XP_063124985	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66455	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072307.2
	ENSRNOP00000078271
	ENSRNOP00000078271.1
	ENSRNOP00000083591
	ENSRNOP00000083591.2
	ENSRNOP00000086062
	ENSRNOP00000086062.2
	ENSRNOP00000086369.1

RefSeq Acc Id:

NP_001264083 ⟸ NM_001277154

- UniProtKB:

A0A8I6A0A2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDHERKR
RVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPVVTETHQLAELN
EKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQTAPEPPKPYSLVRETSSSRSPTPKQKKKKK
KKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPK
SRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTSLTGQSPPLASGHQGEVDAPSEPGATNIQQP
SSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHGDSPRPLAAIPSS
QEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRR
EISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRS
RSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPAR
RGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRS
GRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRRSRSRSL
VRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSRSLSSPRSKAKS
LRRSLSGSSPCPKQKSQTPTRRSRSGSSPPKQKSKTPPRQSRSNSPQPKVKSGTPPRSGSVTNM
QAEECSTTPQRQSHSESSPDGEVKSRTPSRQSCSGSSPRVKSSTPPRQSPSRSSSPQPKVKAVI
SPRRRSHSSSSSPSPSRVTSRTPQRKSRSVSPCPKVDSRLLRHSRSRSSSPDTKMELGTPLRHS
HSGSTSPYPKSMLQTPPDQNLSGSKSPCPQKSRDSPTGSSGSFSLCPGVTPSSILPGESSFSSS
FVQQKGQSQTWPDTSSPEVRQMHLESPSLQSKSQTSPKGGLSRSSSPVTELTARSPVKQDKSEL
STDPKLKSGMSPEQNKTKPDSSLYPLVDSKSLLVQSRLEPSELKERLGLIEEDVASSCVLRDKF
SPTQDRPESSTVLKDTPRVLLKERSGAGSPPGTRDQKILLPNSSQDELMEVEKSEQPLSQVLPT
LSPEHKEMSASNFESSPEIEESPAVLSTLDQSQSQPSKAAEIPAVASCWVGPQVSPEHKELSHS
PPRDNSFESLEFRNSGPVLEVNTDFSPEVKEELNGPFLNQTETDPSLDMKEQSTRSSRRSSSEL
SPEIVEKVGIFSSQSVSSPLLETVQQRTPSRERSSSVSSPELKDGLPRTPSRRSRSGSSPRLRD
GSGTPSRHSLSGSSPGIKETPQTPSRGRSECDSSPEPKALPQTPRARSHSPSSPERNNKSVTPQ
RERSGSESSVEQKTLTRTSPGQRSRSGSSQELDGKPSVSPQERSESDSSPDSKPKARTPLRQRS
HSGSSPEVDSKSRHSPRLSRSGSSPEMKEKSRVLQRAQSGTDSSPEHKIPAPRALPRRSRSGSS
SKERGPSPEGSSSSESSPEHPPKSRTARRGSRSSVEPKTKSRTPPRRRSSRSSPELTRKARVSR
RSRSASSSPETRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRNKTTSRRGRSPSPKPRG
LQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRT
SSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSR
RRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRSPP
VTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR
RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSAT
PPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSARTPMSVLQQTGGSM
MDGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSL
RTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNL
ADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTA
PVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPS
APSQSRMTSERERAPSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSL
SSGTVAKSTSSASDHNGMLSGPAPGVSHAEGGEPHASTGAQQPSALAVLQPAKERRSSSSSSSS
SSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPTPVPKEAVREGRPQEPTPAKR
KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK
PPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDQQSSERVSWRGQRGDSHSPGHK
RRKETPSPRSNRHRSSRSP

hide sequence

Ensembl Acc Id:

ENSRNOP00000072307 ⟸ ENSRNOT00000091287

RefSeq Acc Id:	XP_038941781 ⟸ XM_039085853
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A0A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941782 ⟸ XM_039085854
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A0A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941783 ⟸ XM_039085855
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A0A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941784 ⟸ XM_039085856
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000078271 ⟸ ENSRNOT00000116501

Ensembl Acc Id:

ENSRNOP00000083591 ⟸ ENSRNOT00000100880

Ensembl Acc Id:

ENSRNOP00000086062 ⟸ ENSRNOT00000116530

Ensembl Acc Id:

ENSRNOP00000086369 ⟸ ENSRNOT00000113307

RefSeq Acc Id:	XP_063124982 ⟸ XM_063268912
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A0A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124983 ⟸ XM_063268913
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A2Y2 (UniProtKB/TrEMBL), A0A8I6GDZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124984 ⟸ XM_063268914
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6G2I7 (UniProtKB/TrEMBL), A0A8I6GDZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124985 ⟸ XM_063268915
- Peptide Label:	isoform X7
- UniProtKB:	A6HCM7 (UniProtKB/TrEMBL)

Protein Domains

Spt5 C-terminal

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310163	AgrOrtholog
BioCyc Gene	G2FUF-25904	BioCyc
Ensembl Genes	ENSRNOG00000058561	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000091287.3	UniProtKB/TrEMBL
	ENSRNOT00000100880	ENTREZGENE
	ENSRNOT00000100880.2	UniProtKB/TrEMBL
	ENSRNOT00000113307.2	UniProtKB/TrEMBL
	ENSRNOT00000116501	ENTREZGENE
	ENSRNOT00000116501.2	UniProtKB/TrEMBL
	ENSRNOT00000116530	ENTREZGENE
	ENSRNOT00000116530.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9022920	IMAGE-MGC_LOAD
InterPro	CWC21	UniProtKB/TrEMBL
	mRNA_splic_Cwf21	UniProtKB/TrEMBL
	Spt5_C_dom	UniProtKB/TrEMBL
	SRRM2_cwf21	UniProtKB/TrEMBL
	SRRM_Domain-Containing	UniProtKB/TrEMBL
KEGG Report	rno:302969	UniProtKB/TrEMBL
MGC_CLONE	MGC:187722	IMAGE-MGC_LOAD
NCBI Gene	302969	ENTREZGENE
PANTHER	RHODANESE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	SERINE/ARGININE REPETITIVE MATRIX 2	UniProtKB/TrEMBL
	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 2	UniProtKB/TrEMBL
	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED	UniProtKB/TrEMBL
Pfam	cwf21	UniProtKB/TrEMBL
PhenoGen	Srrm2	PhenoGen
RatGTEx	ENSRNOG00000058561	RatGTEx
SMART	CTD	UniProtKB/TrEMBL
UniProt	A0A0G2K2M9_RAT	UniProtKB/TrEMBL
	A0A8I6A0A2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2Y2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G2I7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GDZ4	ENTREZGENE, UniProtKB/TrEMBL
	A6HCM7	ENTREZGENE, UniProtKB/TrEMBL
	B2GUY6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Srrm2	serine/arginine repetitive matrix 2	Srrm2_predicted	serine/arginine repetitive matrix 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Srrm2_predicted	serine/arginine repetitive matrix 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations