Fam13c (family with sequence similarity 13, member C) - Rat Genome Database

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Gene: Fam13c (family with sequence similarity 13, member C) Rattus norvegicus
Analyze
Symbol: Fam13c
Name: family with sequence similarity 13, member C
RGD ID: 1310149
Description: Orthologous to human FAM13C (family with sequence similarity 13 member C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam13c1; family with sequence similarity 13, member C1; LOC294565; RGD1310149; similar to RIKEN cDNA 1200015N20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82018,064,706 - 18,186,888 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2018,064,706 - 18,286,674 (-)EnsemblGRCr8
mRatBN7.22018,065,625 - 18,187,792 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2018,065,628 - 18,187,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2018,792,250 - 18,914,461 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02018,146,956 - 18,269,159 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02018,619,924 - 18,742,114 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02019,358,869 - 19,470,212 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2019,360,230 - 19,479,325 (-)Ensemblrn6Rnor6.0
Rnor_5.02021,507,800 - 21,625,337 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42018,850,307 - 18,977,473 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2019,457,622 - 19,578,495 (-)NCBICelera
RGSC_v3.12018,864,688 - 19,044,285 (-)NCBI
Cytogenetic Map20p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Fam13c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82018,064,706 - 18,186,888 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2018,064,706 - 18,286,674 (-)EnsemblGRCr8
mRatBN7.22018,065,625 - 18,187,792 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2018,065,628 - 18,187,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2018,792,250 - 18,914,461 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02018,146,956 - 18,269,159 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02018,619,924 - 18,742,114 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02019,358,869 - 19,470,212 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2019,360,230 - 19,479,325 (-)Ensemblrn6Rnor6.0
Rnor_5.02021,507,800 - 21,625,337 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42018,850,307 - 18,977,473 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2019,457,622 - 19,578,495 (-)NCBICelera
RGSC_v3.12018,864,688 - 19,044,285 (-)NCBI
Cytogenetic Map20p11NCBI
FAM13C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381059,246,129 - 59,363,181 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1059,246,118 - 59,363,181 (-)Ensemblhg38GRCh38
GRCh371061,005,889 - 61,122,939 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361060,675,899 - 60,792,358 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341060,675,899 - 60,792,358NCBI
Celera1054,272,006 - 54,388,785 (-)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1054,996,925 - 55,113,295 (-)NCBIHuRef
CHM1_11061,287,609 - 61,404,352 (-)NCBICHM1_1
T2T-CHM13v2.01060,100,433 - 60,217,497 (-)NCBIT2T-CHM13v2.0
Fam13c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391070,274,981 - 70,394,566 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1070,276,311 - 70,394,566 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381070,439,972 - 70,558,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1070,440,481 - 70,558,736 (+)Ensemblmm10GRCm38
MGSCv371069,903,416 - 70,021,480 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361069,836,283 - 69,954,031 (+)NCBIMGSCv36mm8
Celera1071,529,432 - 71,649,113 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.68NCBI
Fam13c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542512,886,501 - 12,990,919 (-)Ensembl
ChiLan1.0NW_00495542512,884,859 - 12,991,139 (-)NCBIChiLan1.0ChiLan1.0
FAM13C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2871,459,018 - 71,576,821 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11071,464,335 - 71,582,145 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01055,781,367 - 55,899,161 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11057,999,029 - 58,116,170 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1057,999,029 - 58,115,863 (-)EnsemblpanPan2panpan1.1
FAM13C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1411,461,024 - 11,607,901 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl411,452,422 - 11,608,088 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha411,652,557 - 11,799,743 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0411,723,469 - 11,870,673 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl411,723,478 - 11,869,973 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1411,701,877 - 11,848,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0411,820,818 - 11,968,004 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0412,130,278 - 12,277,888 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam13c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721369,644,231 - 69,760,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366143,730,471 - 3,848,252 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366143,730,478 - 3,846,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM13C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1462,565,138 - 62,925,849 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11462,622,895 - 62,754,404 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21467,496,618 - 67,628,349 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM13C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1971,898,392 - 72,038,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl971,923,477 - 72,040,371 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604832,784,829 - 32,925,244 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam13c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247914,174,689 - 4,296,150 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247914,175,328 - 4,298,083 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam13c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11816,319,949 - 16,433,897 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam13c
853 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:298
Count of miRNA genes:199
Interacting mature miRNAs:234
Transcripts:ENSRNOT00000000756, ENSRNOT00000051491
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D20Got23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,205,067 - 18,205,254 (+)MAPPERmRatBN7.2
Rnor_6.02019,502,040 - 19,502,224NCBIRnor6.0
Rnor_5.02021,642,146 - 21,642,330UniSTSRnor5.0
RGSC_v3.42018,995,468 - 18,995,653RGDRGSC3.4
RGSC_v3.42018,995,469 - 18,995,653UniSTSRGSC3.4
Celera2019,595,676 - 19,595,860UniSTS
RGSC_v3.12019,009,269 - 19,009,453RGD
RH 3.4 Map20239.6UniSTS
RH 3.4 Map20239.6RGD
RH 2.0 Map20253.5RGD
Cytogenetic Map20p11UniSTS
RH127414  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,065,709 - 18,065,898 (+)MAPPERmRatBN7.2
Rnor_6.02019,358,951 - 19,359,139NCBIRnor6.0
Rnor_5.02021,507,885 - 21,508,073UniSTSRnor5.0
RGSC_v3.42018,849,610 - 18,849,798UniSTSRGSC3.4
Celera2019,457,707 - 19,457,895UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 90 89 58 64 58 6 327 164 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001080212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ212141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000000756   ⟹   ENSRNOP00000000756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2018,079,434 - 18,186,888 (-)Ensembl
mRatBN7.2 Ensembl2018,080,353 - 18,187,592 (-)Ensembl
Rnor_6.0 Ensembl2019,373,565 - 19,468,848 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000051491   ⟹   ENSRNOP00000048490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2018,064,706 - 18,186,530 (-)Ensembl
mRatBN7.2 Ensembl2018,065,628 - 18,187,434 (-)Ensembl
Rnor_6.0 Ensembl2019,360,230 - 19,479,325 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118972   ⟹   ENSRNOP00000096331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2018,064,706 - 18,186,888 (-)Ensembl
mRatBN7.2 Ensembl2018,065,628 - 18,187,592 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172636   ⟹   ENSRNOP00000100694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2018,064,706 - 18,286,674 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172689   ⟹   ENSRNOP00000102387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2018,064,706 - 18,181,048 (-)Ensembl
RefSeq Acc Id: NM_001399503   ⟹   NP_001386432
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,186,888 (-)NCBI
mRatBN7.22018,065,625 - 18,187,792 (-)NCBI
RefSeq Acc Id: XM_039099235   ⟹   XP_038955163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,180,890 (-)NCBI
mRatBN7.22018,065,625 - 18,183,965 (-)NCBI
RefSeq Acc Id: XM_039099236   ⟹   XP_038955164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,180,890 (-)NCBI
mRatBN7.22018,065,625 - 18,183,962 (-)NCBI
RefSeq Acc Id: XM_039099237   ⟹   XP_038955165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,186,602 (-)NCBI
mRatBN7.22018,065,625 - 18,187,503 (-)NCBI
RefSeq Acc Id: XM_039099238   ⟹   XP_038955166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,186,602 (-)NCBI
mRatBN7.22018,065,625 - 18,187,503 (-)NCBI
RefSeq Acc Id: XM_039099240   ⟹   XP_038955168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,186,749 (-)NCBI
mRatBN7.22018,065,625 - 18,187,653 (-)NCBI
RefSeq Acc Id: XM_039099241   ⟹   XP_038955169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,180,898 (-)NCBI
mRatBN7.22018,065,625 - 18,183,965 (-)NCBI
RefSeq Acc Id: XM_039099242   ⟹   XP_038955170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,180,893 (-)NCBI
mRatBN7.22018,065,625 - 18,183,965 (-)NCBI
RefSeq Acc Id: XM_063279080   ⟹   XP_063135150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,180,814 (-)NCBI
RefSeq Acc Id: XM_063279081   ⟹   XP_063135151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,111,636 (-)NCBI
RefSeq Acc Id: XM_063279082   ⟹   XP_063135152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82018,064,706 - 18,119,055 (-)NCBI
Ensembl Acc Id: ENSRNOP00000000756   ⟸   ENSRNOT00000000756
Ensembl Acc Id: ENSRNOP00000048490   ⟸   ENSRNOT00000051491
RefSeq Acc Id: XP_038955168   ⟸   XM_039099240
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS96 (UniProtKB/TrEMBL),   F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955166   ⟸   XM_039099238
- Peptide Label: isoform X4
- UniProtKB: F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955165   ⟸   XM_039099237
- Peptide Label: isoform X3
- UniProtKB: F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955169   ⟸   XM_039099241
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS96 (UniProtKB/TrEMBL),   F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955170   ⟸   XM_039099242
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS96 (UniProtKB/TrEMBL),   F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955163   ⟸   XM_039099235
- Peptide Label: isoform X1
- UniProtKB: F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955164   ⟸   XM_039099236
- Peptide Label: isoform X2
- UniProtKB: F1LUC1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096331   ⟸   ENSRNOT00000118972
RefSeq Acc Id: NP_001386432   ⟸   NM_001399503
- UniProtKB: F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135150   ⟸   XM_063279080
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS96 (UniProtKB/TrEMBL),   F1LUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135152   ⟸   XM_063279082
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063135151   ⟸   XM_063279081
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000100694   ⟸   ENSRNOT00000172636
Ensembl Acc Id: ENSRNOP00000102387   ⟸   ENSRNOT00000172689

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUC1-F1-model_v2 AlphaFold F1LUC1 1-601 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310149 AgrOrtholog
BioCyc Gene G2FUF-4021 BioCyc
Ensembl Genes ENSRNOG00000000275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000756.9 UniProtKB/TrEMBL
  ENSRNOT00000051491 ENTREZGENE
  ENSRNOT00000051491.8 UniProtKB/TrEMBL
  ENSRNOT00000118972 ENTREZGENE
  ENSRNOT00000118972.2 UniProtKB/TrEMBL
  ENSRNOT00000172636 ENTREZGENE
  ENSRNOT00000172636.1 UniProtKB/TrEMBL
  ENSRNOT00000172689 ENTREZGENE
  ENSRNOT00000172689.1 UniProtKB/TrEMBL
InterPro FAM13 UniProtKB/TrEMBL
NCBI Gene 294565 ENTREZGENE
PANTHER PROTEIN FAM13C UniProtKB/TrEMBL
  PTHR15904 UniProtKB/TrEMBL
PhenoGen Fam13c PhenoGen
RatGTEx ENSRNOG00000000275 RatGTEx
UniProt A0A8I6AS96 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LGI5_RAT UniProtKB/TrEMBL
  A0ABK0LGU6_RAT UniProtKB/TrEMBL
  D3ZD52_RAT UniProtKB/TrEMBL
  F1LUC1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Fam13c  family with sequence similarity 13, member C  Fam13c1  family with sequence similarity 13, member C1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam13c1  family with sequence similarity 13, member C1  RGD1310149_predicted  similar to RIKEN cDNA 1200015N20 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310149_predicted  similar to RIKEN cDNA 1200015N20 (predicted)  LOC294565_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294565_predicted  similar to RIKEN cDNA 1200015N20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL