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Gene: Tbc1d9b (TBC1 domain family member 9B) Rattus norvegicus

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Symbol:

Tbc1d9b

Name:

TBC1 domain family member 9B

RGD ID:

1310147

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in system process. Predicted to be located in membrane. Orthologous to human TBC1D9B (TBC1 domain family member 9B); INTERACTS WITH 3-chloropropane-1,2-diol; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BUB2-like protein 1; LOC360520; RGD1310147; similar to TBC1 domain family, member 8; TBC1 domain family, member 9B; TBC1 domain family, member 9B (with GRAM domain); vascular Rab-GAP/TBC-containing

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D9B (TBC1 domain family member 9B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tbc1d9b (TBC1 domain family, member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d9b (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D9B (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D9B (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d9b (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D9B (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D9B (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d9b (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tbc1d9b (TBC1 domain family member 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HAP1 (huntingtin associated protein 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tbc1d9b (TBC1 domain family, member 9B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TBC1D9B (TBC1 domain family member 9B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MDR1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7324	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d9b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d9b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	34,961,012 - 34,998,227 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	34,960,996 - 34,998,213 (+)	Ensembl				GRCr8
mRatBN7.2	10	34,459,930 - 34,497,146 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	34,459,953 - 34,497,145 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	39,135,411 - 39,172,515 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	7,674,660 - 7,711,764 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	34,129,092 - 34,166,197 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	35,637,103 - 35,677,335 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	35,637,133 - 35,677,329 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	35,397,640 - 35,436,149 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	35,686,754 - 35,721,323 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	33,809,345 - 33,847,569 (+)	NCBI		Celera
RGSC_v3.1	10	35,506,285 - 35,721,082 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

deguelin (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

rotenone (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cilium assembly (ISO)

system process (IEA)

Cellular Component

membrane (IEA)

Molecular Function

calcium ion binding (IEA)

GTPase activator activity (IBA,IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17646400

Genomics

Comparative Map Data

Tbc1d9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	34,961,012 - 34,998,227 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	34,960,996 - 34,998,213 (+)	Ensembl				GRCr8
mRatBN7.2	10	34,459,930 - 34,497,146 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	34,459,953 - 34,497,145 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	39,135,411 - 39,172,515 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	7,674,660 - 7,711,764 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	34,129,092 - 34,166,197 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	35,637,103 - 35,677,335 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	35,637,133 - 35,677,329 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	35,397,640 - 35,436,149 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	35,686,754 - 35,721,323 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	33,809,345 - 33,847,569 (+)	NCBI		Celera
RGSC_v3.1	10	35,506,285 - 35,721,082 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

TBC1D9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	179,862,071 - 179,907,897 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	179,862,058 - 179,907,911 (-)	Ensembl			hg38	GRCh38
GRCh37	5	179,289,071 - 179,334,897 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	179,221,677 - 179,267,464 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	174,914,219 - 174,960,020 (-)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	174,013,821 - 174,059,392 (-)	NCBI		HuRef
CHM1_1	5	178,721,413 - 178,767,291 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	180,417,215 - 180,462,876 (-)	NCBI		T2T-CHM13v2.0

Tbc1d9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	50,021,891 - 50,063,612 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	50,022,223 - 50,063,612 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	50,131,059 - 50,172,785 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	50,131,396 - 50,172,785 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	49,944,862 - 49,986,287 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	49,974,783 - 50,016,208 (+)	NCBI		MGSCv36	mm8
Celera	11	54,691,528 - 54,733,141 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	30.28	NCBI

Tbc1d9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	690,829 - 724,384 (+)	Ensembl
ChiLan1.0	NW_004955408	690,827 - 724,987 (+)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	174,810,433 - 174,856,831 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	172,948,942 - 172,996,361 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	175,021,717 - 175,067,970 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	182,343,899 - 182,387,140 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	182,343,899 - 182,387,225 (-)	Ensembl			panPan2	panpan1.1

TBC1D9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	1,793,525 - 1,831,773 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	1,781,641 - 1,829,895 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	1,913,867 - 1,955,864 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	1,764,229 - 1,806,246 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	1,763,755 - 1,806,236 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	1,735,910 - 1,777,880 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	1,815,203 - 1,857,163 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	2,055,312 - 2,097,338 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tbc1d9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	119,662,585 - 119,710,543 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936739	872,356 - 918,490 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936739	872,362 - 919,570 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D9B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	78,691,807 - 78,725,534 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	78,675,867 - 78,726,391 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	80,241,932 - 80,292,784 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D9B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	81,595,246 - 81,635,828 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	81,594,392 - 81,635,808 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666075	12,974,969 - 13,016,062 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d9b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	42,719,934 - 42,752,489 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	42,719,641 - 42,752,559 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tbc1d9b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	32,800,556 - 32,837,775 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tbc1d9b
307 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	200
Count of miRNA genes:	124
Interacting mature miRNAs:	151
Transcripts:	ENSRNOT00000043085
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Arb3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	34,490,559 - 34,490,668 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	35,669,465 - 35,669,573	NCBI	Rnor6.0
Rnor_5.0	10	35,428,279 - 35,428,387	UniSTS	Rnor5.0
RGSC_v3.4	10	35,713,452 - 35,713,561	RGD	RGSC3.4
RGSC_v3.4	10	35,713,453 - 35,713,561	UniSTS	RGSC3.4
Celera	10	33,839,800 - 33,839,908	UniSTS
RGSC_v3.1	10	35,714,501 - 35,714,610	RGD
Cytogenetic Map	10	q22	UniSTS

RH129848

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	34,496,941 - 34,497,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	35,675,847 - 35,676,038	NCBI	Rnor6.0
Rnor_5.0	10	35,434,661 - 35,434,852	UniSTS	Rnor5.0
RGSC_v3.4	10	35,719,835 - 35,720,026	UniSTS	RGSC3.4
Celera	10	33,846,182 - 33,846,373	UniSTS
RH 3.4 Map	10	362.2	UniSTS
Cytogenetic Map	10	q22	UniSTS

RH135347

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	34,477,781 - 34,478,000 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	35,656,462 - 35,656,680	NCBI	Rnor6.0
Rnor_5.0	10	35,415,276 - 35,415,494	UniSTS	Rnor5.0
RGSC_v3.4	10	35,700,676 - 35,700,894	UniSTS	RGSC3.4
Celera	10	33,827,022 - 33,827,240	UniSTS
RH 3.4 Map	10	352.4	UniSTS
Cytogenetic Map	10	q22	UniSTS

RH138027

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	34,485,206 - 34,485,327 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	35,663,886 - 35,664,006	NCBI	Rnor6.0
Rnor_5.0	10	35,422,700 - 35,422,820	UniSTS	Rnor5.0
RGSC_v3.4	10	35,708,100 - 35,708,220	UniSTS	RGSC3.4
Celera	10	33,834,447 - 33,834,567	UniSTS
RH 3.4 Map	10	351.6	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001394243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043085 ⟹ ENSRNOP00000047447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	34,960,996 - 34,998,213 (+)	Ensembl
mRatBN7.2 Ensembl	10	34,459,953 - 34,497,130 (+)	Ensembl
Rnor_6.0 Ensembl	10	35,637,133 - 35,677,329 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098460 ⟹ ENSRNOP00000079447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	34,459,953 - 34,497,130 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114596 ⟹ ENSRNOP00000097642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	34,960,996 - 34,998,213 (+)	Ensembl
mRatBN7.2 Ensembl	10	34,459,953 - 34,497,145 (+)	Ensembl

RefSeq Acc Id:

NM_001394243 ⟹ NP_001381172

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,012 - 34,998,227 (+)	NCBI
mRatBN7.2	10	34,459,930 - 34,497,145 (+)	NCBI

RefSeq Acc Id:

NM_001394244 ⟹ NP_001381173

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,012 - 34,998,227 (+)	NCBI
mRatBN7.2	10	34,459,930 - 34,497,145 (+)	NCBI

RefSeq Acc Id:

XM_006246295 ⟹ XP_006246357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,015 - 34,998,227 (+)	NCBI
mRatBN7.2	10	34,459,932 - 34,497,146 (+)	NCBI
Rnor_6.0	10	35,637,104 - 35,676,053 (+)	NCBI
Rnor_5.0	10	35,397,640 - 35,436,149 (+)	NCBI

Sequence:

show sequence

CGCCCCGGCCTCTCGGCTCAGCTCGGCTAGACTCGGGCGCAGCGACCGCGGCGCGCGCTTCCGC
CTCACGGGCTCTGGCCCGGTGTGAGCTGCCGCGGGATGTGGCTCGGCCCGGAGGAGGTGCTGGT
GGCCAACGCGCTATGGGTGACGGAGCGGGCCAACCCCTTCTTCGTGCTGCAGCGGCGCCGAGGC
CATGGCAAGGGTGGCGGCCTCACGGGTCTTCTTGTGGGCACCCTGGATGTGGTGCTGGACTCCA
GTGCCCGTGTGGCCCCCTACCGCATCCTGCACCAGACCCAGGACTCACAGGTCTACTGGACGGT
GGCATGTGGTTCTTCCCGCAAAGAGATCACCAAACACTGGGAGTGGCTGGAAAACAACTTACTT
CAGACGCTGTCCATCTTCGACAACGAGGAGGACATCACTACCTTCGTCAAGGGCAAGATACACG
GCATCATCGCAGAAGAGAACAAGAACCTGCAGCCCCAGGGGGACGAGGACCCAGGGAAATTCAA
GGAGGCAGAGCTAAAGATGCGGAAGCAGTTCGGCATGCCAGAGGGAGAGAAGCTGGTCAACTAC
TACTCCTGTAGCTTCTGGAAGGGCCGAGTGCCTCGGCAGGGCTGGCTCTACCTGACCGTCAACC
ACCTGTGTTTCTACTCCTTCTTGCTGGGGAAGGAAGTGAGCCTGGTGGTACAGTGGGTGGACGT
TACACGCTTGGAGAAGAATGCCACTTTACTCTTCCCCGAGAGCATCCGTGTGGACACGCGGGAC
CAGGAGCTATTCTTCTCCATGTTCCTAAACATTGGTGAGACCTTCAAGCTCATGGAACAGCTGG
CCAACCTGGCCATGCGACAACTGCTGGACAGCGAGGGCTTCCTGGAGGACAAGGCCCTGCCCAG
GCCTATCCGGCCACATAAGAACATCTCAGCTCTAAAGCGAGACCTGGATGCCCGAGCTAAGAAC
GAGTGCTACAGGGCCACGTTCCGGCTCCCAAAAGATGAACGGCTGGATGGACACACAGGTTGCA
CCCTGTGGACACCATTTAACAAGCTACACATCCCCGGCCAGATGTTCATCTCCTATAACTACAT
CTGCTTTGCCAGCAAAGAGGAAGATGCGTGCCGCCTCATCATACCCCTGAGGGAGGTGACCATT
GTTGAGAAAGCTGACAGCTCCAGTGTCCTGCCCAGCCCTCTGTCTATCAGCACTAAGAGTAAAA
TGACCTTCTTGTTTGCCAACCTGAAAGACCGTGACTTCCTGGTTCAGAGGATCTCTGACTTCCT
CCAGAAAACACCGTCCAAACAGACAGGCAGCATCGCTGGGGGAACAAAGGCCAGTGTTCCAGAC
CCAGCCCCAGAGTCTCTCCCAACTCCTCAGGAGGCATCAGAGCCACCCACCAGCCCAACCTCTC
CCCTAAGCAGCCCTCTGAGTTTCAGTACACAGGAGATTCCTACTACTTCCCAGGGCCTGCTCAA
AGTCTTCCAGAAGAACTCACCCATGGAGGACCTCGGCGCCAAAGGGGCCAAGGAGAAGATGAAG
GAAGAGTCCTGGAACATCCACTTCTTTGAGTACGGGCGTGGCGTGTGCATGTACCGAACAGCCA
AAACTCGGGAGCTGGTCCTGAAAGGCATCCCCGAGAGCCTCCGAGGGGAGCTTTGGCTCCTCTT
CTCGGGGGCCTGGAATGAGATGGTGACCCATCCTGGCTACTACGCTGAGCTAGTAGAGAAGTCC
ATGGGGAAGTACAGCTTGGCCACCGAAGAGATCGAGCGGGACCTCCATCGCTCCATGCCTGAGC
ACCCTGCCTTCCAGAACGAGCTGGGGATCGCTGCACTCCGGCGGGTGCTGACCGCCTACGCCTT
CCGAAACCCGACTATTGGCTACTGCCAGGCAATGAACATCGTGACCTCGGTGCTCCTGCTCTAT
GGCAGTGAGGAAGAAGCCTTCTGGCTACTGGTGGCCCTGTGTGAGCGCATGCTGCCCGACTACT
ACAATACCAGAGTAGTGGGGGCCCTCGTAGACCAAGGTATCTTTGAAGAGCTCACAAGAGACGT
CCTGCCCCGGCTCTCAGAGAAGATGCAGGAGCTGGGGGTGATCTCCAGCATCTCGCTGTCCTGG
TTCCTGACCCTCTTCCTCAGCGTCATGCCCTTTGAGAGCGCAGTGGTTATTGTTGACTGCTTTT
TCTACGAGGGCATCAAAGTGATACTGCAGGTGGCCTTGGCTGTGCTGGACGCCAACATGGAACA
GCTGCTGGACTGCAGTGACGAGGGCGAGGCCATGACCGTGCTGGGCAGGTACCTGGACAATGTG
GTCAACAAGCAGAGCATTTCTCCACCTATCCCACACCTCCATGCTCTGCTGACCAGTGGAGATG
ACCCTCCTGCAGAGGTGGACATCTTTGACCTCCTGAAAGTGTCTTATGAGAAGTTCAGCAGCCT
GAGGGCTGACGACATTGAACAGATGCGGTTTAAACAGAGGCTGAAGGTGATCCAGTCCTTGGAA
GACACAGCCAAGAGAAGCGTGGTCCGGGCCATACCAGGGGACATTGGCTTCTCCATCGAAGAGC
TGGAGGATCTTTACATGGTGTTTAAGGCCAAGCATCTGGCAAGCCAGTACTGGGGTGGTAACCG
CTCAGCAGCCATCCACCGAGACCCCAGCCTGCCCTACCTGGAGCAGTACCGGATCGATGCCAGC
CAGTTTCGGGAGCTCTTTGCCAGCCTGACGCCTTGGGCCTGTGGCTCTCACACGCCTGTCTTGG
CAGGCCGCATGTTCCGCCTCCTGGACCAAAACAAGGACTCACTGATCAACTTCAAGGAGTTTGT
GACAGGGATGAGTGGGATGTACCATGGAGACCTCACAGAGAAGCTCAAAGCGCTCTACAAGCTG
CACCTGCCCCCAGCTCTGATCCCAGAGGAAGCGGAGTCAGCCCTGGAGGCCGCCCATTATTTCC
CAGAGGATAGCTCCTCAGAAGGACTGCAGGAGCAGCAGGAAGGAAGAGGAAGTGAGGACATCCA
GGAAAGGAGAGAGGAGAAGGAGACCAGCCCCCCTGACTACCGACACTACCTTCGAATATGGGCT
AAGGAGAAAGAGGCTCAGAAGGAAACCATCAAGGACCTTCCCAAGATGAACCAGGAGCAATTCA
TTGAGCTGTGTAAAACACTTTACAACATGTTTAGCGAAGACCCTTTGGAACAGGACTTGTACCA
TGCCATCGCCACTGTGGCCAGCCTTCTCCTCCGCATTGGTGAGGTGGGGAAGAAGTTTTCGGCC
CTGACCACCAAGAAGCCCAGGGATGGTGCCCACAGTGGGGATCACAACAGTGCCACAGAAGAGG
ATGAGCCACCCATATCCAAACTCCATCAGGACCCAGCACGGGAATGCCAGCCACCAGCTGCAGG
GGATCCGCAGGCCAAAGCCAGTGGCGACATGCATCTTGGGAAAGCATTGCAGGACAGTCACGTG
ATAGTGGAGGGAGGCAGCGGCGAGGGGCAGGGCTCTCCTTCCCTGCTTTTGTCTGATGATGAAA
CCAAAGATGACATGTCCATGTCCTCCTACTCAGTAGTCAGCACGGGGTCCCTGCCGTGCGAGGA
CCTCACAGAAGACACAGTGCTGGTGGGAGGAGAAGCCTGCAGCCCCACTGCCACCTCACGGATG
GGAGGCACCGTGGACATGGATTGGTGCATTTCCTTCGAGCAGATCCTGGCCTCCATCCTGACAG
AGTCTGTGCTAGTGAACTTCTTTGAGAAGAGGGTAGACATTGGACTCAAGATCAAAGACCAGAA
GAAAGTCGAAAGGCAGTTCAGCACCTCCAGTGACCATGAGCCCCCTGGGGTCTTGGGCTGAGCT
GTGAAATGGAAGTTGGTCTCTGTCTCCTTCCTTTATCCCTTGCTGTGTTCTCCTCACAGATACA
CCTGTTCTTGAAGCAGGGTGTCACAGAAGCAAATGTCAGGTCAATGCAGACCCAGTTGCCTTAC
AGGGATTCCCTAGGCCAGGGCAACCTCTTCCTCCCTGCACTTGGTTACCTGGAGGACCTGCCTC
CTGTACCCATAGCATTAGAGCCTTTTGGGTCTGCCCCTGCCTGCTTCTTGCTCCTGCACTCTGT
GCTGTGCACACACTACATCAGTTGCTCTATCTATGGAAAGACCTACAGCCATGTGGCCTGGCCA
CCAGTTGTCATTTTGCCATGTGCTTGGGCTCCAAAGGATGCAACCTTCTAGACACCCTCTGAAG
TTCTTCAGCCTGAATCTAAGTCTTAGGACTGAGGAAGCAGGAGAATGTCTGTTGCATGGGTAGG
AGCACCGCACTCCTAACTTATGAGGTCTCCATTCCTCTGCATCATTAACTTTAAAAGCACATCC
CTCAGGTCCTCCTCTCTTCCCTTGCCCTCATTTTAGTTGGCTAAAAACCACACTGTGCTCAATG
CCTTAATAAATCCCTGAAAGAAAGAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_008767690 ⟹ XP_008765912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,014 - 34,998,227 (+)	NCBI
mRatBN7.2	10	34,459,931 - 34,497,146 (+)	NCBI
Rnor_6.0	10	35,637,103 - 35,676,053 (+)	NCBI

Sequence:

show sequence

CCGCCCCGGCCTCTCGGCTCAGCTCGGCTAGACTCGGGCGCAGCGACCGCGGCGCGCGCTTCCG
CCTCACGGGCTCTGGCCCGGTGTGAGCTGCCGCGGGATGTGGCTCGGCCCGGAGGAGGTGCTGG
TGGCCAACGCGCTATGGGTGACGGAGCGGGCCAACCCCTTCTTCGTGCTGCAGCGGCGCCGAGG
CCATGGCAAGGGTGGCGGCCTCACGGGTCTTCTTGTGGGCACCCTGGATGTGGTGCTGGACTCC
AGTGCCCGTGTGGCCCCCTACCGCATCCTGCACCAGACCCAGGACTCACAGGTCTACTGGACGG
TGGCATGTGGTTCTTCCCGCAAAGAGATCACCAAACACTGGGAGTGGCTGGAAAACAACTTACT
TCAGACGCTGTCCATCTTCGACAACGAGGAGGACATCACTACCTTCGTCAAGGGCAAGATACAC
GGCATCATCGCAGAAGAGAACAAGAACCTGCAGCCCCAGGGGGACGAGGACCCAGGGAAATTCA
AGGAGGCAGAGCTAAAGATGCGGAAGCAGTTCGGCATGCCAGAGGGAGAGAAGCTGGTCAACTA
CTACTCCTGTAGCTTCTGGAAGGGCCGAGTGCCTCGGCAGGGCTGGCTCTACCTGACCGTCAAC
CACCTGTGTTTCTACTCCTTCTTGCTGGGGAAGGAAGTGAGCCTGGTGGTACAGTGGGTGGACG
TTACACGCTTGGAGAAGAATGCCACTTTACTCTTCCCCGAGAGCATCCGTGTGGACACGCGGGA
CCAGGAGCTATTCTTCTCCATGTTCCTAAACATTGGTGAGACCTTCAAGCTCATGGAACAGCTG
GCCAACCTGGCCATGCGACAACTGCTGGACAGCGAGGGCTTCCTGGAGGACAAGGCCCTGCCCA
GGCCTATCCGGCCACATAAGAACATCTCAGCTCTAAAGCGAGACCTGGATGCCCGAGCTAAGAA
CGAGTGCTACAGGGCCACGTTCCGGCTCCCAAAAGATGAACGGCTGGATGGACACACAGGTTGC
ACCCTGTGGACACCATTTAACAAGCTACACATCCCCGGCCAGATGTTCATCTCCTATAACTACA
TCTGCTTTGCCAGCAAAGAGGAAGATGCGTGCCGCCTCATCATACCCCTGAGGGAGGTGACCAT
TGTTGAGAAAGCTGACAGCTCCAGTGTCCTGCCCAGCCCTCTGTCTATCAGCACTAAGAGTAAA
ATGACCTTCTTGTTTGCCAACCTGAAAGACCGTGACTTCCTGGTTCAGAGGATCTCTGACTTCC
TCCAGAAAACACCGTCCAAACAGACAGGCAGCATCGCTGGGGGAACAAAGGCCAGTGTTCCAGA
CCCAGCCCCAGAGGGCCTGCTCAAAGTCTTCCAGAAGAACTCACCCATGGAGGACCTCGGCGCC
AAAGGGGCCAAGGAGAAGATGAAGGAAGAGTCCTGGAACATCCACTTCTTTGAGTACGGGCGTG
GCGTGTGCATGTACCGAACAGCCAAAACTCGGGAGCTGGTCCTGAAAGGCATCCCCGAGAGCCT
CCGAGGGGAGCTTTGGCTCCTCTTCTCGGGGGCCTGGAATGAGATGGTGACCCATCCTGGCTAC
TACGCTGAGCTAGTAGAGAAGTCCATGGGGAAGTACAGCTTGGCCACCGAAGAGATCGAGCGGG
ACCTCCATCGCTCCATGCCTGAGCACCCTGCCTTCCAGAACGAGCTGGGGATCGCTGCACTCCG
GCGGGTGCTGACCGCCTACGCCTTCCGAAACCCGACTATTGGCTACTGCCAGGCAATGAACATC
GTGACCTCGGTGCTCCTGCTCTATGGCAGTGAGGAAGAAGCCTTCTGGCTACTGGTGGCCCTGT
GTGAGCGCATGCTGCCCGACTACTACAATACCAGAGTAGTGGGGGCCCTCGTAGACCAAGGTAT
CTTTGAAGAGCTCACAAGAGACGTCCTGCCCCGGCTCTCAGAGAAGATGCAGGAGCTGGGGGTG
ATCTCCAGCATCTCGCTGTCCTGGTTCCTGACCCTCTTCCTCAGCGTCATGCCCTTTGAGAGCG
CAGTGGTTATTGTTGACTGCTTTTTCTACGAGGGCATCAAAGTGATACTGCAGGTGGCCTTGGC
TGTGCTGGACGCCAACATGGAACAGCTGCTGGACTGCAGTGACGAGGGCGAGGCCATGACCGTG
CTGGGCAGGTACCTGGACAATGTGGTCAACAAGCAGAGCATTTCTCCACCTATCCCACACCTCC
ATGCTCTGCTGACCAGTGGAGATGACCCTCCTGCAGAGGTGGACATCTTTGACCTCCTGAAAGT
GTCTTATGAGAAGTTCAGCAGCCTGAGGGCTGACGACATTGAACAGATGCGGTTTAAACAGAGG
CTGAAGGTGATCCAGTCCTTGGAAGACACAGCCAAGAGAAGCGTGGTCCGGGCCATACCAGGGG
ACATTGGCTTCTCCATCGAAGAGCTGGAGGATCTTTACATGGTGTTTAAGGCCAAGCATCTGGC
AAGCCAGTACTGGGGTGGTAACCGCTCAGCAGCCATCCACCGAGACCCCAGCCTGCCCTACCTG
GAGCAGTACCGGATCGATGCCAGCCAGTTTCGGGAGCTCTTTGCCAGCCTGACGCCTTGGGCCT
GTGGCTCTCACACGCCTGTCTTGGCAGGCCGCATGTTCCGCCTCCTGGACCAAAACAAGGACTC
ACTGATCAACTTCAAGGAGTTTGTGACAGGGATGAGTGGGATGTACCATGGAGACCTCACAGAG
AAGCTCAAAGCGCTCTACAAGCTGCACCTGCCCCCAGCTCTGATCCCAGAGGAAGCGGAGTCAG
CCCTGGAGGCCGCCCATTATTTCCCAGAGGATAGCTCCTCAGAAGCATCTCCTCTGGCCTCAGA
TCTGGATCTTTTCCTGCCTTGGGAGGCTCAAGCAGGACTGCAGGAGCAGCAGGAAGGAAGAGGA
AGTGAGGACATCCAGGAAAGGAGAGAGGAGAAGGAGACCAGCCCCCCTGACTACCGACACTACC
TTCGAATATGGGCTAAGGAGAAAGAGGCTCAGAAGGAAACCATCAAGGACCTTCCCAAGATGAA
CCAGGAGCAATTCATTGAGCTGTGTAAAACACTTTACAACATGTTTAGCGAAGACCCTTTGGAA
CAGGACTTGTACCATGCCATCGCCACTGTGGCCAGCCTTCTCCTCCGCATTGGTGAGGTGGGGA
AGAAGTTTTCGGCCCTGACCACCAAGAAGCCCAGGGATGGTGCCCACAGTGGGGATCACAACAG
TGCCACAGAAGAGGATGAGCCACCCATATCCAAACTCCATCAGGACCCAGCACGGGAATGCCAG
CCACCAGCTGCAGGGGATCCGCAGGCCAAAGCCAGTGGCGACATGCATCTTGGGAAAGCATTGC
AGGACAGTCACGTGATAGTGGAGGGAGGCAGCGGCGAGGGGCAGGGCTCTCCTTCCCTGCTTTT
GTCTGATGATGAAACCAAAGATGACATGTCCATGTCCTCCTACTCAGTAGTCAGCACGGGGTCC
CTGCCGTGCGAGGACCTCACAGAAGACACAGTGCTGGTGGGAGGAGAAGCCTGCAGCCCCACTG
CCACCTCACGGATGGGAGGCACCGTGGACATGGATTGGTGCATTTCCTTCGAGCAGATCCTGGC
CTCCATCCTGACAGAGTCTGTGCTAGTGAACTTCTTTGAGAAGAGGGTAGACATTGGACTCAAG
ATCAAAGACCAGAAGAAAGTCGAAAGGCAGTTCAGCACCTCCAGTGACCATGAGCCCCCTGGGG
TCTTGGGCTGAGCTGTGAAATGGAAGTTGGTCTCTGTCTCCTTCCTTTATCCCTTGCTGTGTTC
TCCTCACAGATACACCTGTTCTTGAAGCAGGGTGTCACAGAAGCAAATGTCAGGTCAATGCAGA
CCCAGTTGCCTTACAGGGATTCCCTAGGCCAGGGCAACCTCTTCCTCCCTGCACTTGGTTACCT
GGAGGACCTGCCTCCTGTACCCATAGCATTAGAGCCTTTTGGGTCTGCCCCTGCCTGCTTCTTG
CTCCTGCACTCTGTGCTGTGCACACACTACATCAGTTGCTCTATCTATGGAAAGACCTACAGCC
ATGTGGCCTGGCCACCAGTTGTCATTTTGCCATGTGCTTGGGCTCCAAAGGATGCAACCTTCTA
GACACCCTCTGAAGTTCTTCAGCCTGAATCTAAGTCTTAGGACTGAGGAAGCAGGAGAATGTCT
GTTGCATGGGTAGGAGCACCGCACTCCTAACTTATGAGGTCTCCATTCCTCTGCATCATTAACT
TTAAAAGCACATCCCTCAGGTCCTCCTCTCTTCCCTTGCCCTCATTTTAGTTGGCTAAAAACCA
CACTGTGCTCAATGCCTTAATAAATCCCTGAAAGAAAGAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_063269328 ⟹ XP_063125398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,015 - 34,998,227 (+)	NCBI

RefSeq Acc Id:

XM_063269329 ⟹ XP_063125399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,014 - 34,998,227 (+)	NCBI

RefSeq Acc Id:

XM_063269330 ⟹ XP_063125400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	34,961,015 - 34,998,227 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001381172	(Get FASTA)	NCBI Sequence Viewer
	NP_001381173	(Get FASTA)	NCBI Sequence Viewer
	XP_006246357	(Get FASTA)	NCBI Sequence Viewer
	XP_008765912	(Get FASTA)	NCBI Sequence Viewer
	XP_063125398	(Get FASTA)	NCBI Sequence Viewer
	XP_063125399	(Get FASTA)	NCBI Sequence Viewer
	XP_063125400	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66483	(Get FASTA)	NCBI Sequence Viewer
	EDM04251	(Get FASTA)	NCBI Sequence Viewer
	EDM04252	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047447
	ENSRNOP00000047447.5
	ENSRNOP00000097642
	ENSRNOP00000097642.2

RefSeq Acc Id:	XP_006246357 ⟸ XM_006246295
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AWL8 (UniProtKB/TrEMBL), A0A8I5ZMR5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWLGPEEVLVANALWVTERANPFFVLQRRRGHGKGGGLTGLLVGTLDVVLDSSARVAPYRILHQ TQDSQVYWTVACGSSRKEITKHWEWLENNLLQTLSIFDNEEDITTFVKGKIHGIIAEENKNLQP QGDEDPGKFKEAELKMRKQFGMPEGEKLVNYYSCSFWKGRVPRQGWLYLTVNHLCFYSFLLGKE VSLVVQWVDVTRLEKNATLLFPESIRVDTRDQELFFSMFLNIGETFKLMEQLANLAMRQLLDSE GFLEDKALPRPIRPHKNISALKRDLDARAKNECYRATFRLPKDERLDGHTGCTLWTPFNKLHIP GQMFISYNYICFASKEEDACRLIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRD FLVQRISDFLQKTPSKQTGSIAGGTKASVPDPAPESLPTPQEASEPPTSPTSPLSSPLSFSTQE IPTTSQGLLKVFQKNSPMEDLGAKGAKEKMKEESWNIHFFEYGRGVCMYRTAKTRELVLKGIPE SLRGELWLLFSGAWNEMVTHPGYYAELVEKSMGKYSLATEEIERDLHRSMPEHPAFQNELGIAA LRRVLTAYAFRNPTIGYCQAMNIVTSVLLLYGSEEEAFWLLVALCERMLPDYYNTRVVGALVDQ GIFEELTRDVLPRLSEKMQELGVISSISLSWFLTLFLSVMPFESAVVIVDCFFYEGIKVILQVA LAVLDANMEQLLDCSDEGEAMTVLGRYLDNVVNKQSISPPIPHLHALLTSGDDPPAEVDIFDLL KVSYEKFSSLRADDIEQMRFKQRLKVIQSLEDTAKRSVVRAIPGDIGFSIEELEDLYMVFKAKH LASQYWGGNRSAAIHRDPSLPYLEQYRIDASQFRELFASLTPWACGSHTPVLAGRMFRLLDQNK DSLINFKEFVTGMSGMYHGDLTEKLKALYKLHLPPALIPEEAESALEAAHYFPEDSSSEGLQEQ QEGRGSEDIQERREEKETSPPDYRHYLRIWAKEKEAQKETIKDLPKMNQEQFIELCKTLYNMFS EDPLEQDLYHAIATVASLLLRIGEVGKKFSALTTKKPRDGAHSGDHNSATEEDEPPISKLHQDP ARECQPPAAGDPQAKASGDMHLGKALQDSHVIVEGGSGEGQGSPSLLLSDDETKDDMSMSSYSV VSTGSLPCEDLTEDTVLVGGEACSPTATSRMGGTVDMDWCISFEQILASILTESVLVNFFEKRV DIGLKIKDQKKVERQFSTSSDHEPPGVLG hide sequence

RefSeq Acc Id:	XP_008765912 ⟸ XM_008767690
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZMR5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWLGPEEVLVANALWVTERANPFFVLQRRRGHGKGGGLTGLLVGTLDVVLDSSARVAPYRILHQ TQDSQVYWTVACGSSRKEITKHWEWLENNLLQTLSIFDNEEDITTFVKGKIHGIIAEENKNLQP QGDEDPGKFKEAELKMRKQFGMPEGEKLVNYYSCSFWKGRVPRQGWLYLTVNHLCFYSFLLGKE VSLVVQWVDVTRLEKNATLLFPESIRVDTRDQELFFSMFLNIGETFKLMEQLANLAMRQLLDSE GFLEDKALPRPIRPHKNISALKRDLDARAKNECYRATFRLPKDERLDGHTGCTLWTPFNKLHIP GQMFISYNYICFASKEEDACRLIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRD FLVQRISDFLQKTPSKQTGSIAGGTKASVPDPAPEGLLKVFQKNSPMEDLGAKGAKEKMKEESW NIHFFEYGRGVCMYRTAKTRELVLKGIPESLRGELWLLFSGAWNEMVTHPGYYAELVEKSMGKY SLATEEIERDLHRSMPEHPAFQNELGIAALRRVLTAYAFRNPTIGYCQAMNIVTSVLLLYGSEE EAFWLLVALCERMLPDYYNTRVVGALVDQGIFEELTRDVLPRLSEKMQELGVISSISLSWFLTL FLSVMPFESAVVIVDCFFYEGIKVILQVALAVLDANMEQLLDCSDEGEAMTVLGRYLDNVVNKQ SISPPIPHLHALLTSGDDPPAEVDIFDLLKVSYEKFSSLRADDIEQMRFKQRLKVIQSLEDTAK RSVVRAIPGDIGFSIEELEDLYMVFKAKHLASQYWGGNRSAAIHRDPSLPYLEQYRIDASQFRE LFASLTPWACGSHTPVLAGRMFRLLDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYKLHLPP ALIPEEAESALEAAHYFPEDSSSEASPLASDLDLFLPWEAQAGLQEQQEGRGSEDIQERREEKE TSPPDYRHYLRIWAKEKEAQKETIKDLPKMNQEQFIELCKTLYNMFSEDPLEQDLYHAIATVAS LLLRIGEVGKKFSALTTKKPRDGAHSGDHNSATEEDEPPISKLHQDPARECQPPAAGDPQAKAS GDMHLGKALQDSHVIVEGGSGEGQGSPSLLLSDDETKDDMSMSSYSVVSTGSLPCEDLTEDTVL VGGEACSPTATSRMGGTVDMDWCISFEQILASILTESVLVNFFEKRVDIGLKIKDQKKVERQFS TSSDHEPPGVLG hide sequence

Ensembl Acc Id:

ENSRNOP00000047447 ⟸ ENSRNOT00000043085

Ensembl Acc Id:

ENSRNOP00000079447 ⟸ ENSRNOT00000098460

Ensembl Acc Id:

ENSRNOP00000097642 ⟸ ENSRNOT00000114596

RefSeq Acc Id:	NP_001381172 ⟸ NM_001394243
- Peptide Label:	isoform 1
- UniProtKB:	F1LRL4 (UniProtKB/TrEMBL), A0A8I5ZMR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001381173 ⟸ NM_001394244
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I5ZMR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125399 ⟸ XM_063269329
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZMR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125398 ⟸ XM_063269328
- Peptide Label:	isoform X1
- UniProtKB:	A6HDZ6 (UniProtKB/TrEMBL), A0A8I5ZMR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125400 ⟸ XM_063269330
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZMR5 (UniProtKB/TrEMBL)

Protein Domains

EF-hand Rab-GAP TBC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LRL4-F1-model_v2	AlphaFold	F1LRL4	1-1262	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697147

Promoter ID:

EPDNEW_R7672

Type:

initiation region

Name:

Tbc1d9b_1

Description:

TBC1 domain family member 9B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	35,637,132 - 35,637,192	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310147	AgrOrtholog
BioCyc Gene	G2FUF-25254	BioCyc
Ensembl Genes	ENSRNOG00000003050	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000043085	ENTREZGENE
	ENSRNOT00000043085.6	UniProtKB/TrEMBL
	ENSRNOT00000114596	ENTREZGENE
	ENSRNOT00000114596.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 1	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7099086	IMAGE-MGC_LOAD
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
	GRAM	UniProtKB/TrEMBL
	PH_dom-like	UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	RabGAP/TBC_dom	UniProtKB/TrEMBL
	TCB1D9/TCB1D9B_PH-GRAM1	UniProtKB/TrEMBL
	TCB1D9/TCB1D9B_PH-GRAM2	UniProtKB/TrEMBL
MGC_CLONE	MGC:187963	IMAGE-MGC_LOAD
NCBI Gene	360520	ENTREZGENE
PANTHER	PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER 9B	UniProtKB/TrEMBL
Pfam	GRAM	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
PhenoGen	Tbc1d9b	PhenoGen
PROSITE	EF_HAND_2	UniProtKB/TrEMBL
	TBC_RABGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003050	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
	GRAM	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8I5ZMR5	ENTREZGENE
	A0A8I6AWL8	ENTREZGENE, UniProtKB/TrEMBL
	A6HDZ6	ENTREZGENE, UniProtKB/TrEMBL
	B2GV11_RAT	UniProtKB/TrEMBL
	F1LRL4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Tbc1d9b	TBC1 domain family member 9B	Tbc1d9b	TBC1 domain family, member 9B (with GRAM domain)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-02-02	Tbc1d9b	TBC1 domain family, member 9B (with GRAM domain)	Tbc1d9b	TBC1 domain family, member 9B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Tbc1d9b	TBC1 domain family, member 9B	RGD1310147_predicted	similar to TBC1 domain family, member 8; BUB2-like protein 1; vascular Rab-GAP/TBC-containing (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310147_predicted	similar to TBC1 domain family, member 8; BUB2-like protein 1; vascular Rab-GAP/TBC-containing (predicted)	LOC360520_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360520_predicted	similar to TBC1 domain family, member 8; BUB2-like protein 1; vascular Rab-GAP/TBC-containing (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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