Gtf2e2 (general transcription factor IIE subunit 2) - Rat Genome Database

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Gene: Gtf2e2 (general transcription factor IIE subunit 2) Rattus norvegicus
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Symbol: Gtf2e2
Name: general transcription factor IIE subunit 2
RGD ID: 1310134
Description: Predicted to enable RNA polymerase II general transcription initiation factor activity. Predicted to contribute to TFIIH-class transcription factor complex binding activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of transcription factor TFIID complex and transcription factor TFIIE complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 6. Orthologous to human GTF2E2 (general transcription factor IIE subunit 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: general transcription factor II E, polypeptide 2 (beta subunit); general transcription factor IIE, polypeptide 2 (beta subunit); general transcription factor IIE, polypeptide 2, beta; LOC306516; transcription initiation factor IIE subunit beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81665,102,386 - 65,152,563 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1665,102,390 - 65,161,394 (-)EnsemblGRCr8
mRatBN7.21658,399,307 - 58,449,467 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,738,230 - 63,785,361 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01667,151,906 - 67,199,038 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,372,469 - 62,419,598 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01662,113,846 - 62,164,339 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,778,116 - 61,827,126 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,168,709 - 62,218,868 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,436,672 - 56,485,957 (-)NCBICelera
RGSC_v3.11662,168,793 - 62,215,640 (-)NCBI
Cytogenetic Map16q12.3NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Structural insights into transcription initiation by RNA polymerase II. Grunberg S and Hahn S, Trends Biochem Sci. 2013 Dec;38(12):603-11. doi: 10.1016/j.tibs.2013.09.002. Epub 2013 Oct 11.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:12947022   PMID:22658674   PMID:27193682  


Genomics

Comparative Map Data
Gtf2e2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81665,102,386 - 65,152,563 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1665,102,390 - 65,161,394 (-)EnsemblGRCr8
mRatBN7.21658,399,307 - 58,449,467 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,738,230 - 63,785,361 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01667,151,906 - 67,199,038 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,372,469 - 62,419,598 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01662,113,846 - 62,164,339 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,778,116 - 61,827,126 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,168,709 - 62,218,868 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,436,672 - 56,485,957 (-)NCBICelera
RGSC_v3.11662,168,793 - 62,215,640 (-)NCBI
Cytogenetic Map16q12.3NCBI
GTF2E2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,578,318 - 30,658,236 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,578,318 - 30,660,846 (-)Ensemblhg38GRCh38
GRCh37830,435,835 - 30,515,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,555,573 - 30,635,280 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34830,555,574 - 30,635,274NCBI
Celera829,394,512 - 29,474,259 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,980,483 - 29,060,402 (-)NCBIHuRef
CHM1_1830,638,171 - 30,717,889 (-)NCBICHM1_1
T2T-CHM13v2.0830,857,764 - 30,937,703 (-)NCBIT2T-CHM13v2.0
Gtf2e2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,221,942 - 34,267,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,221,861 - 34,267,201 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38833,731,914 - 33,777,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,731,833 - 33,777,173 (+)Ensemblmm10GRCm38
MGSCv37834,842,386 - 34,887,645 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36835,197,977 - 35,243,099 (+)NCBIMGSCv36mm8
Celera836,366,841 - 36,414,460 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.79NCBI
Gtf2e2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,000,868 - 7,084,207 (-)Ensembl
ChiLan1.0NW_0049554637,000,868 - 7,080,778 (-)NCBIChiLan1.0ChiLan1.0
GTF2E2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2749,141,221 - 49,220,923 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,857,118 - 24,936,961 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,881,879 - 29,961,554 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1827,071,634 - 27,151,147 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,071,634 - 27,151,147 (-)EnsemblpanPan2panpan1.1
GTF2E2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,697,872 - 33,778,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,707,420 - 33,777,851 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1634,160,349 - 34,240,505 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01635,726,970 - 35,807,607 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1635,726,875 - 35,807,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11633,825,507 - 33,905,842 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,395,537 - 34,475,827 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,516,308 - 34,596,621 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gtf2e2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,834,974 - 56,953,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936792409,830 - 484,003 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936792409,637 - 484,010 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2E2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,444,470 - 54,531,213 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11554,444,480 - 54,525,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,839,232 - 61,920,626 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF2E2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,690,056 - 28,772,470 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605213,333,790 - 13,418,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtf2e2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248397,247,596 - 7,329,480 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248397,248,183 - 7,328,582 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gtf2e2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11353,236,603 - 53,284,180 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gtf2e2
300 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:313
Count of miRNA genes:203
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000058872
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
D5Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01661,815,479 - 61,816,040UniSTSRnor5.0
Rnor_5.0521,842,228 - 21,842,328UniSTSRnor5.0
RGSC_v3.4517,517,135 - 17,517,235UniSTSRGSC3.4
RGSC_v3.41662,207,989 - 62,208,550UniSTSRGSC3.4
RGSC_v3.4517,517,134 - 17,517,235RGDRGSC3.4
Celera516,536,980 - 16,537,080UniSTS
Celera1656,475,146 - 56,475,707UniSTS
RGSC_v3.1517,517,134 - 17,517,235RGD
RH 3.4 Map5100.9RGD
RH 3.4 Map5100.9UniSTS
RH 2.0 Map5107.5RGD
Cytogenetic Map16q12.3UniSTS
AI462509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,399,344 - 58,399,477 (+)MAPPERmRatBN7.2
Rnor_6.01662,113,884 - 62,114,016NCBIRnor6.0
Rnor_5.01661,778,154 - 61,778,286UniSTSRnor5.0
RGSC_v3.41662,168,747 - 62,168,879UniSTSRGSC3.4
Celera1656,436,710 - 56,436,842UniSTS
Cytogenetic Map16q12.3UniSTS
PMC153767P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,438,972 - 58,439,170 (+)MAPPERmRatBN7.2
Rnor_6.01662,153,879 - 62,154,076NCBIRnor6.0
Rnor_5.01661,816,454 - 61,816,651UniSTSRnor5.0
RGSC_v3.41662,208,960 - 62,209,157UniSTSRGSC3.4
Celera1656,476,115 - 56,476,312UniSTS
Cytogenetic Map16q12.3UniSTS
AI835723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,439,031 - 58,439,114 (+)MAPPERmRatBN7.2
Rnor_6.01662,153,938 - 62,154,020NCBIRnor6.0
Rnor_5.01661,816,513 - 61,816,595UniSTSRnor5.0
RGSC_v3.41662,209,019 - 62,209,101UniSTSRGSC3.4
Celera1656,476,174 - 56,476,256UniSTS
Cytogenetic Map16q12.3UniSTS
BE097303  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,439,152 - 58,439,336 (+)MAPPERmRatBN7.2
Rnor_6.01662,154,059 - 62,154,242NCBIRnor6.0
Rnor_5.01661,816,634 - 61,816,817UniSTSRnor5.0
RGSC_v3.41662,209,140 - 62,209,323UniSTSRGSC3.4
Celera1656,476,295 - 56,476,478UniSTS
RH 3.4 Map16541.81UniSTS
Cytogenetic Map16q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000058872   ⟹   ENSRNOP00000055659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1665,102,390 - 65,161,394 (-)Ensembl
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)Ensembl
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172458   ⟹   ENSRNOP00000099792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1665,102,390 - 65,128,761 (-)Ensembl
RefSeq Acc Id: NM_001107318   ⟹   NP_001100788
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,102,386 - 65,152,301 (-)NCBI
mRatBN7.21658,399,307 - 58,449,227 (-)NCBI
Rnor_6.01662,113,846 - 62,164,135 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
RGSC_v3.41662,168,709 - 62,218,868 (-)RGD
Celera1656,436,672 - 56,485,957 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253230   ⟹   XP_006253292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,102,386 - 65,152,563 (-)NCBI
mRatBN7.21658,399,307 - 58,449,467 (-)NCBI
Rnor_6.01662,113,846 - 62,164,338 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253231   ⟹   XP_006253293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,103,570 - 65,152,540 (-)NCBI
mRatBN7.21658,403,016 - 58,449,467 (-)NCBI
Rnor_6.01662,115,075 - 62,164,339 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094546   ⟹   XP_038950474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,102,386 - 65,152,255 (-)NCBI
mRatBN7.21658,399,307 - 58,448,589 (-)NCBI
RefSeq Acc Id: XM_063275438   ⟹   XP_063131508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,102,386 - 65,128,922 (-)NCBI
RefSeq Acc Id: NP_001100788   ⟸   NM_001107318
- UniProtKB: D3ZCP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253292   ⟸   XM_006253230
- Peptide Label: isoform X1
- UniProtKB: D3ZCP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253293   ⟸   XM_006253231
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000055659   ⟸   ENSRNOT00000058872
RefSeq Acc Id: XP_038950474   ⟸   XM_039094546
- Peptide Label: isoform X1
- UniProtKB: D3ZCP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131508   ⟸   XM_063275438
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000099792   ⟸   ENSRNOT00000172458

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCP9-F1-model_v2 AlphaFold D3ZCP9 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310134 AgrOrtholog
BioCyc Gene G2FUF-11124 BioCyc
Ensembl Genes ENSRNOG00000014422 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058872 ENTREZGENE
  ENSRNOT00000058872.5 UniProtKB/TrEMBL
  ENSRNOT00000172458 ENTREZGENE
  ENSRNOT00000172458.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro TFA2_Winged_2 UniProtKB/TrEMBL
  TFIIE-bsu UniProtKB/TrEMBL
  TFIIE_bsu_DNA-bd UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:306516 UniProtKB/TrEMBL
NCBI Gene 306516 ENTREZGENE
PANTHER PTHR12716 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA UniProtKB/TrEMBL
Pfam TFA2_Winged_2 UniProtKB/TrEMBL
  TFIIE_beta UniProtKB/TrEMBL
PhenoGen Gtf2e2 PhenoGen
PIRSF TFIIE-beta UniProtKB/TrEMBL
PROSITE TFIIE_BETA_C UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014422 RatGTEx
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0ABK0LDB0_RAT UniProtKB/TrEMBL
  D3ZCP9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 Gtf2e2  general transcription factor IIE subunit 2  Gtf2e2  general transcription factor IIE, polypeptide 2, beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-26 Gtf2e2  general transcription factor IIE, polypeptide 2, beta  Gtf2e2  general transcription factor IIE, polypeptide 2 (beta subunit)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Gtf2e2  general transcription factor IIE, polypeptide 2 (beta subunit)  Gtf2e2  general transcription factor II E, polypeptide 2 (beta subunit)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gtf2e2  general transcription factor II E, polypeptide 2 (beta subunit)   Gtf2e2_predicted  general transcription factor II E, polypeptide 2 (beta subunit) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gtf2e2_predicted  general transcription factor II E, polypeptide 2 (beta subunit) (predicted)      Symbol and Name status set to approved 70820 APPROVED