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Gene: Rinl (Ras and Rab interactor-like) Rattus norvegicus

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Symbol:

Rinl

Name:

Ras and Rab interactor-like

RGD ID:

1310133

Description:

Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in actin cytoskeleton and ruffle. Predicted to be active in cytosol and endocytic vesicle. Orthologous to human RINL (Ras and Rab interactor like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292760; ras and Rab interactor-like protein; RGD1310133; similar to RIKEN cDNA 5830482F20 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RINL (Ras and Rab interactor like)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rinl (Ras and Rab interactor-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rinl (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RINL (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RINL (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rinl (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RINL (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RINL (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rinl (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rinl (Ras and Rab interactor like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rinl (Ras and Rab interactor-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RINL (Ras and Rab interactor like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rinl (Ras and Rab interactor-like)	Alliance	DIOPT (PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	spri	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	LOC100487948	Alliance	DIOPT (PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,204,543 - 93,215,851 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	93,204,789 - 93,215,851 (+)	Ensembl				GRCr8
mRatBN7.2	1	84,077,011 - 84,088,590 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,077,265 - 84,088,330 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	89,487,160 - 89,498,251 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,946,222 - 97,957,275 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,243,018 - 91,254,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	86,971,997 - 86,983,306 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	86,972,244 - 86,983,514 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	83,896,411 - 83,907,473 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	78,469,423 - 78,480,462 (+)	NCBI		Celera
RGSC_v3.1	1	83,976,211 - 83,984,397 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

camptothecin (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

fulvestrant (ISO)

hydralazine (ISO)

Nutlin-3 (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (ISO)

vesicle-mediated transport (IEA)

Cellular Component

actin cytoskeleton (IEA,ISO)

cytosol (IBA)

endocytic vesicle (IBA)

ruffle (IEA,ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO)

protein binding (ISO)

small GTPase binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21419809

Genomics

Comparative Map Data

Rinl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,204,543 - 93,215,851 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	93,204,789 - 93,215,851 (+)	Ensembl				GRCr8
mRatBN7.2	1	84,077,011 - 84,088,590 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,077,265 - 84,088,330 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	89,487,160 - 89,498,251 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,946,222 - 97,957,275 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,243,018 - 91,254,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	86,971,997 - 86,983,306 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	86,972,244 - 86,983,514 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	83,896,411 - 83,907,473 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	78,469,423 - 78,480,462 (+)	NCBI		Celera
RGSC_v3.1	1	83,976,211 - 83,984,397 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

RINL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,867,830 - 38,878,275 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,867,830 - 38,878,275 (-)	Ensembl			hg38	GRCh38
GRCh37	19	39,358,470 - 39,368,915 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	44,050,310 - 44,060,734 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	36,160,912 - 36,171,331 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,805,138 - 35,815,580 (-)	NCBI		HuRef
CHM1_1	19	39,358,940 - 39,369,389 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,671,881 - 41,682,331 (-)	NCBI		T2T-CHM13v2.0

Rinl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,488,186 - 28,498,390 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,488,394 - 28,498,388 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	28,788,874 - 28,798,965 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,788,969 - 28,798,963 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	29,573,988 - 29,583,984 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,497,737 - 28,507,723 (+)	NCBI		MGSCv36	mm8
Celera	7	23,349,761 - 23,359,838 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.93	NCBI

Rinl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	645,841 - 652,167 (+)	Ensembl
ChiLan1.0	NW_004955468	644,530 - 651,686 (+)	NCBI	ChiLan1.0	ChiLan1.0

RINL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	45,165,431 - 45,181,027 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	47,035,983 - 47,051,788 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	35,971,639 - 35,984,448 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	44,523,990 - 44,533,680 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	44,524,823 - 44,532,150 (-)	Ensembl			panPan2	panpan1.1

RINL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,235,136 - 114,241,836 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,236,414 - 114,241,296 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	113,636,837 - 113,643,300 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,835,072 - 114,841,769 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,836,189 - 114,841,304 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,392,803 - 114,399,496 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	114,025,966 - 114,032,652 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	115,021,748 - 115,028,443 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rinl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	13,393,692 - 13,399,426 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	1,821,823 - 1,827,010 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	1,821,767 - 1,824,526 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RINL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,672,624 - 47,682,109 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	47,672,627 - 47,682,283 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,210,764 - 43,216,266 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RINL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,479,424 - 33,493,021 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	33,479,561 - 33,491,293 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	11,503,868 - 11,514,242 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rinl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,232,604 - 12,237,913 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	12,231,877 - 12,239,264 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rinl
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	167,205,899 - 167,214,336 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rinl
55 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	301
Count of miRNA genes:	193
Interacting mature miRNAs:	233
Transcripts:	ENSRNOT00000036907
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat

Markers in Region

RH139426

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	84,087,291 - 84,087,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	86,982,268 - 86,982,394	NCBI	Rnor6.0
Rnor_5.0	1	88,163,400 - 88,163,526	UniSTS	Rnor5.0
RGSC_v3.4	1	83,906,435 - 83,906,561	UniSTS	RGSC3.4
Celera	1	78,479,427 - 78,479,553	UniSTS
RH 3.4 Map	1	839.2	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	154	91	90	59	92	59	6	355	191	11	133	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036907 ⟹ ENSRNOP00000034246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	93,204,789 - 93,215,851 (+)	Ensembl
mRatBN7.2 Ensembl	1	84,077,265 - 84,088,330 (+)	Ensembl
Rnor_6.0 Ensembl	1	86,972,244 - 86,983,306 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078156 ⟹ ENSRNOP00000073226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	93,204,789 - 93,215,851 (+)	Ensembl
mRatBN7.2 Ensembl	1	84,077,265 - 84,088,330 (+)	Ensembl
Rnor_6.0 Ensembl	1	86,973,745 - 86,983,514 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139379 ⟹ ENSRNOP00000106412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	93,204,793 - 93,214,964 (+)	Ensembl

RefSeq Acc Id:

NM_001106241 ⟹ NP_001099711

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,789 - 93,215,851 (+)	NCBI
mRatBN7.2	1	84,077,265 - 84,088,330 (+)	NCBI
Rnor_6.0	1	86,972,244 - 86,983,306 (+)	NCBI
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI
RGSC_v3.4	1	83,896,411 - 83,907,473 (+)	RGD
Celera	1	78,469,423 - 78,480,462 (+)	RGD

Sequence:

show sequence

CTTTCACTTCCTGCTGCTCAGGCTCCCCTCGGAACAGCTGGAGCAGCCTTGAGTCTTGTCTTCC
TCCATGCCAGAGGCCAAAGCATGGCTCACTGGTGCCTGGCAGCATGAGGCTAGCCCAGCCGGAC
ATGGTGTCTGCAGCCACTACTGAAGAGGCCAGGCTGAGTTGGCCACTAGCAGAAGGAGCAGACA
AGAGCCCACTGAGGGTCCTCAGCACGACAGAGTCACTTCTTCGACTGCAGAGGACACAGAGGGT
GTGGCAGGTCCCCGAGCTGGACGCTGAGCATGCCAAGGCCTTTCTCAAGCCGTGGCCACTGGGG
AGCTTCCTGGTCATCGGGCAGGACCCTGACCAGGTCCTGATGTTGAAGACAGGACCTTCGTCAG
GAGATATCAACACCTACCAAATTCAGAAGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAACCT
CTGCATGCCAGACTTTCCTCATCTCCTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCAAGG
ACTCTGCTCTTGCCCACACCTACTGTGGGGCCTGGAGATAAGCACTCAGATCCTCGTCGACTTG
GCTGCATCCAGGTGGACACCTCAGGGAGGGTGCTGTCTGTGGTGAACCAGCTCTACCTGGAGAC
CCATGGAGGCTGGGAAACAGAAACACCGCAGCAAACAAAGCCAGAAACTGGCCAGAAACGCAGT
CTAGCCCCCAGGATGCCCACTCCACACCGGGTCTCCTGGGTGGAAGAGTCTCTGAAACCGGAAG
CTCACCATACTGGACAGGAAGTGCATCATCCAGAAAGACAAGTGCATTATCCTGGACCAGAAGC
TCACTCTCTTGGGCCAGAAGTACACTTTCCTAGTCCTGTTCTAGAAGAGGAGGAAGAAGTGAAC
AATGACAGCTACAAGGATGAAGAGGAAGGCTGCGAGGATATGCTCACTGCCCACATCCGTGCTC
TGGCCAGTGCCCGGAGCAGTTATGTAGCCAGGCAGTACCAATGCCTTCGAGCACGACTCATCTC
AGATTCTGGAAATCCCTACAGCCCAGGGGACCCAGCCACAGAGCTGCTTCAGGATGTACGCCAG
CTCCTCACTGACCTCCAGGATTACCTGGCAAAAGACCCCGATGTCAGAGCTGTCTTTGGGAATA
GGGGACCTAGCATCCCTCGGGAAGAAGATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCGAGC
GGTTCTGGAGCCCCTGAAGCCCGCCCTGTGGACCAAACTCCGAACTCTCAGAGCCCAGGAACTG
CGGCGACTGCGCCGGCGCCAAATAGCCTTGAGGGTAGGAGCAGGACCCGAGGGACAGAGCCCGG
CCTTGCGGAACCGTATCCACGCACGCCTCGCTCACCTGCACGCAGCGTGCGCCCCGCGCCGCAA
GGTGGCGCTGTTGTTGGCGGTGTGCAGCGATGTCTATGCAGGCCTGGCTGGCGGCGAGAATAAA
GAGCCCCTGGGGGCTGACGCCTTTTTACCTGCCCTGACCGAGGAGCTGATCTGGAGTCCACATA
TTGGGGAAACACAGCTGGATGTGGAGTTTCTTATGGAGCTCTTGGATCCAGGGGAGTTGCGAGG
AGAAGCTGGGTATTATCTTACCACGTGGTTTGGGGCTCTCTACCACATTGCTCACTACCAGCCT
GATGCTGGCCGTGCACCCCAGGAGCTCAGCTCTGAGGCCCGGGCCTCCTTGCGCCAGTGGCACC
GAAGACGGACACTGCACCAGCAAGCCCAGCCCACAGCCCCGGAAAACCAGCCCTTTGAGGAGCC
ATGGGCAATAGGGGACCCATGATGATTGGAGTCCTCAAAAATCAGTCTCCAGAACCTTTTGGCC
CACTCCTCTGCTAAGCAAGATTCTGGAGGCATCTGGGTCAGCACAGTGGGTGGGGCAGAAAAAA
GGACGTGGCGTTTTGCACTGGCTGTTCCTACTTCCTTCCTTCCCCTCCTGGTCTGTCCACATGT
TACCTCAATGAGGCTCTCCCCAGCAAACAAAACCAACGCCTAAACAATACTACAACTACAGCCC
TCTCACCTGAATCTCTCTGGGGCAGGTAGAATAAAGGCACAGTCCCCAAAAGGTATCTACATCC
TGATCCTATCTGTGACTATGACACTTAACCTGGTCAAGAGATCTTTACAAAAAATGAGGCGTGT
AGTGACCTGAGACGGGAGCTTATTCTGGATTCTTCTGTGCCTTATGTAGTTAAAAGGGTAGCAG
AGGTATGGGGAACATCATGAGTTTATGCCCCCAGCAGAACGGGGTGGCAAAATTACTTGAGACC
AGGACTGTGAGGACACTGTGGTACTGAAACATAGTAGGTGTTCAGGACAGTAGCACTGAAACAT
AGTAGGTGTTTAGGAACAAATATTTGCCTTGAAAACATATCAACTGCCCTAACCACTGTGACCT
TAGTTGCAAAAGTGTTTGTACAGCCATTGTTGTTGTTGTTGTTTTTTGATTTTCCAAGACGTGG
CTCCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGCTGTGTAGACCAGGCTGGCCTCAAACTCAG
AGATCCACCTGCTTCTACCTCTAGAGAGATGGATTAAAGACGTGTGCCGCCACCACCGCCCGGC
TGGGGCCGCCATGATTGAAGATGATAAGACGAGGGACAGTGTCCCCGGGGATTGTGCAGGACAG
GGAGAACGGAAGGAAATGAGGAAGAGATGGGAGGATCAGAAAGAAATGAAAAGACGCTGGCTTT
GAAGTCAGAGTAAAGAGACAAGCCACAGATACAGAAGCCACCAGATGCTGGGCCGACCCCAGCA
AAGCCTTCTCCCCCCGAGAGCTACAGAAGTCACGGGGCCCCACTGACATCCTGGTGTCTGTGAG
ATTAGTGGTCCAGAATTGTGCGCAGATAAATCCCTGCTGTGTTAAGACACGAGGTAACAACAAC
AACAACAACAACAACAATAATAATAATAATACATTTTAAAATGTACTGACTGGG

hide sequence

RefSeq Acc Id:

XM_006228653 ⟹ XP_006228715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,543 - 93,214,957 (+)	NCBI
mRatBN7.2	1	84,077,011 - 84,088,590 (+)	NCBI
Rnor_6.0	1	86,971,997 - 86,982,420 (+)	NCBI
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI

Sequence:

show sequence

GCGGCTTGGGGAGGGAGAGGGCTGGGCCAGGAAGACTCCAGGATCTTAGGAGTGATGGCGGCTG
GGGCCAAGAGATGCCCCTGGAGAGGTAGCCTGGTGACTTTTCATCCTGACTGTAGGCCTGACAG
AGGCCCACTCCTCCAAAGTGGCTCTCTGAAGAATGACCCCCTGGAAAGAGAGGAAGGTGATTTC
AAATGCCCCAGCCCCGCCTCTTCCCCTGCCTCCCTGGCTTCCTCTCTAGAGAACACTTTCACTT
CCTGCTGCTCAGGCTCCCCTCGGAACAGTTCTTGCCCTAGCTGGAGCAGCCTTGAGTCTTGTCT
TCCTCCATGCCAGAGGCCAAAGCATGGCTCACTGGTGCCTGGCAGCATGAGGCTAGCCCAGCCG
GACATGGTGTCTGCAGCCACTACTGAAGAGGCCAGGCTGAGTTGGCCACTAGCAGAAGGAGCAG
ACAAGAGCCCACTGAGGGTCCTCAGCACGACAGAGTCACTTCTTCGACTGCAGAGGACACAGAG
GGTGTGGCAGGTCCCCGAGCTGGACGCTGAGCATGCCAAGGCCTTTCTCAAGCCGTGGCCACTG
GGGAGCTTCCTGGTCATCGGGCAGGACCCTGACCAGGTCCTGATGTTGAAGACAGGACCTTCGT
CAGGAGATATCAACACCTACCAAATTCAGAAGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAA
CCTCTGCATGCCAGACTTTCCTCATCTCCTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCA
AGGACTCTGCTCTTGCCCACACCTACTGTGGGGCCTGGAGATAAGCACTCAGATCCTCGTCGAC
TTGGCTGCATCCAGGTGGACACCTCAGGGAGGGTGCTGTCTGTGGTGAACCAGCTCTACCTGGA
GACCCATGGAGGCTGGGAAACAGAAACACCGCAGCAAACAAAGCCAGAAACTGGCCAGAAACGC
AGTCTAGCCCCCAGGATGCCCACTCCACACCGGGTCTCCTGGGTGGAAGAGTCTCTGAAACCGG
AAGCTCACCATACTGGACAGGAAGTGCATCATCCAGAAAGACAAGTGCATTATCCTGGACCAGA
AGCTCACTCTCTTGGGCCAGAAGTACACTTTCCTAGTCCTGTTCTAGAAGAGGAGGAAGAAGTG
AACAATGACAGCTACAAGGATGAAGAGGAAGGCTGCGAGGATATGCTCACTGCCCACATCCGTG
CTCTGGCCAGTGCCCGGAGCAGTTATGTAGCCAGGCAGTACCAATGCCTTCGAGCACGACTCAT
CTCAGATTCTGGAAATCCCTACAGCCCAGGGGACCCAGCCACAGAGCTGCTTCAGGATGTACGC
CAGCTCCTCACTGACCTCCAGGATTACCTGGCAAAAGACCCCGATGTCAGAGCTGTCTTTGGGA
ATAGGGGACCTAGCATCCCTCGGGAAGAAGATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCG
AGCGGTTCTGGAGCCCCTGAAGCCCGCCCTGTGGACCAAACTCCGAACTCTCAGAGCCCAGGAA
CTGCGGCGACTGCGCCGGCGCCAAATAGCCTTGAGGGTAGGAGCAGGACCCGAGGGACAGAGCC
CGGCCTTGCGGAACCGTATCCACGCACGCCTCGCTCACCTGCACGCAGCGTGCGCCCCGCGCCG
CAAGGTGGCGCTGTTGTTGGCGGTGTGCAGCGATGTCTATGCAGGCCTGGCTGGCGGCGAGAAT
AAAGAGCCCCTGGGGGCTGACGCCTTTTTACCTGCCCTGACCGAGGAGCTGATCTGGAGTCCAC
ATATTGGGGAAACACAGCTGGATGTGGAGTTTCTTATGGAGCTCTTGGATCCAGGGGAGTTGCG
AGGAGAAGCTGGGTATTATCTTACCACGTGGTTTGGGGCTCTCTACCACATTGCTCACTACCAG
CCTGATGCTGGCCGTGCACCCCAGGAGCTCAGCTCTGAGGCCCGGGCCTCCTTGCGCCAGTGGC
ACCGAAGACGGACACTGCACCAGCAAGCCCAGCCCACAGCCCCGGAAAACCAGCCCTTTGAGGA
GCCATGGGCAATAGGGGACCCATGATGATTGGAGTCCTCAAAAATCAGTCTCCAGAACCTTTTG
GCCCACTCCTCTGCTAAGCAAGATTCTGGAGGCATCTGGGTCAGCACAGTGGGTGGGGCAGAAA
AAAGGACGTGGCGTTTTGCACTGGCTGTTCCTACTTCCTTCCTTCCCCTCCTGGTCTGTCCACA
TGTTACCTCAATGAGGCTCTCCCCAGCAAACAAAACCAACGCCTAAACAATACTACAACTACAG
CCCTCTCACCTGAATCTCTCTGGGGCAGGTAGAATAAAGGCACAGTCCCCAAAAGGTATCTACA
TCCTGA

hide sequence

RefSeq Acc Id:

XM_006228655 ⟹ XP_006228717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,566 - 93,214,957 (+)	NCBI
mRatBN7.2	1	84,077,045 - 84,088,590 (+)	NCBI
Rnor_6.0	1	86,971,997 - 86,982,420 (+)	NCBI
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI

Sequence:

show sequence

GCGGCTTGGGGAGGGAGAGGGCTGGGCCAGGAAGACTCCAGGATCTTAGGAGTGATGGCGGCTG
GGGCCAAGAGATGCCCCTGGAGAGGTAGCCTGGTGACTTTTCATCCTGACTGTAGGCCTGACAG
AGGCCCACTCCTCCAAAGTGGCTCTCTGAAGAATGACCCCCTGGAAAGAGAGGAAGGTGATTTC
AAATGCCCCAGCCCCGCCTCTTCCCCTGCCTCCCTGGCTTCCTCTCTAGAGAACACTTTCACTT
CCTGCTGCTCAGGCTCCCCTCGGAACAGTTCTTGCCCTAGCTGGAGCAGCCTTGAGTCTTGTCT
TCCTCCATGCCAGAGGCCAAAGCATGGCTCACTGGTGCCTGGCAGCATGAGGCTAGCCCAGCCG
GACATGGTGTCTGCAGCCACTACTGAAGAGGCCAGGCTGAGTTGGCCACTAGCAGAAGGAGCAG
ACAAGAGCCCACTGAGGGTCCTCAGCACGACAGAGTCACTTCTTCGACTGCAGAGGACACAGAG
GGTGTGGCAGGTCCCCGAGCTGGACGCTGAGCATGCCAAGGCCTTTCTCAAGCCGTGGCCACTG
GGGAGCTTCCTGGTCATCGGGCAGGACCCTGACCAGGTCCTGATGTTGAAGACAGGACCTTCGT
CAGGAGATATCAACACCTACCAAATTCAGAAGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAA
CCTCTGCATGCCAGACTTTCCTCATCTCCTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCA
AGGACTCTGCTCTTGCCCACACCTACTGTGGGGCCTGGAGATAAGCACTCAGATCCTCGTCGAC
TTGGCTGCATCCAGGTGGACACCTCAGGGAGGGTGCTGTCTGTGGTGAACCAGCTCTACCTGGA
GACCCATGGAGGCTGGGAAACAGAAACACCGCAGCAAACAAAGCCAGAAACTGGCCAGAAACGC
AGTCTAGCCCCCAGGATGCCCACTCCACACCGGGTCTCCTGGGTGGAAGAGTCTCTGAAACCGG
AAGCTCACCATACTGGACAGGAAGTGCATCATCCAGAAAGACAAGTGCATTATCCTGGACCAGA
AGCTCACTCTCTTGGGCCAGAAGTACACTTTCCTAGTCCTGTTCTAGAAGAGGAGGAAGAAGTG
AACAATGACAGCTACAAGGATGAAGAGGAAGGCTGCGAGGATATGCTCACTGCCCACATCCGTG
CTCTGGCCAGTGCCCGGAGCAGTTATGTAGCCAGGCAGTACCAATGCCTTCGAGCACGACTCAT
CTCAGATTCTGGAAATCCCTACAGCCCAGGGGACCCAGCCACAGAGCTGCTTCAGGATGTACGC
CAGCTCCTCACTGACCTCCAGGATTACCTGGCAAAAGACCCCGATGTCAGAGCTGTCTTTGGGA
ATAGGGGACCTAGCATCCCTCGGGAAGAAGATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCG
AGCGGTTCTGGAGCCCCTGAAGCCCGCCCTGTGGACCAAACTCCGAACTCTCAGAGCCCAGGAA
CTGCGGCGACTGCGCCGGCGCCAAATAGCCTTGAGGGTAGGAGCAGGACCCGAGGGACAGAGCC
CGGCCTTGCGGAACCGTATCCACGCACGCCTCGCTCACCTGCACGCAGCGTGCGCCCCGCGCCG
CAAGGTGGCGCTGTTGTTGGCGGTGTGCAGCGATGTCTATGCAGGCCTGGCTGGCGGCGAGAAT
AAAGCTGGGTATTATCTTACCACGTGGTTTGGGGCTCTCTACCACATTGCTCACTACCAGCCTG
ATGCTGGCCGTGCACCCCAGGAGCTCAGCTCTGAGGCCCGGGCCTCCTTGCGCCAGTGGCACCG
AAGACGGACACTGCACCAGCAAGCCCAGCCCACAGCCCCGGAAAACCAGCCCTTTGAGGAGCCA
TGGGCAATAGGGGACCCATGATGATTGGAGTCCTCAAAAATCAGTCTCCAGAACCTTTTGGCCC
ACTCCTCTGCTAAGCAAGATTCTGGAGGCATCTGGGTCAGCACAGTGGGTGGGGCAGAAAAAAG
GACGTGGCGTTTTGCACTGGCTGTTCCTACTTCCTTCCTTCCCCTCCTGGTCTGTCCACATGTT
ACCTCAATGAGGCTCTCCCCAGCAAACAAAACCAACGCCTAAACAATACTACAACTACAGCCCT
CTCACCTGAATCTCTCTGGGGCAGGTAGAATAAAGGCACAGTCCCCAAAAGGTATCTACATCCT
GA

hide sequence

RefSeq Acc Id:

XM_006228656 ⟹ XP_006228718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,566 - 93,214,225 (+)	NCBI
mRatBN7.2	1	84,077,045 - 84,086,707 (+)	NCBI
Rnor_6.0	1	86,971,997 - 86,981,630 (+)	NCBI
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI

Sequence:

show sequence

GCGGCTTGGGGAGGGAGAGGGCTGGGCCAGGAAGACTCCAGGATCTTAGGAGTGATGGCGGCTG
GGGCCAAGAGATGCCCCTGGAGAGGTAGCCTGGTGACTTTTCATCCTGACTGTAGGCCTGACAG
AGGCCCACTCCTCCAAAGTGGCTCTCTGAAGAATGACCCCCTGGAAAGAGAGGAAGGTGATTTC
AAATGCCCCAGCCCCGCCTCTTCCCCTGCCTCCCTGGCTTCCTCTCTAGAGAACACTTTCACTT
CCTGCTGCTCAGGCTCCCCTCGGAACAGTTCTTGCCCTAGCTGGAGCAGCCTTGAGTCTTGTCT
TCCTCCATGCCAGAGGCCAAAGCATGGCTCACTGGTGCCTGGCAGCATGAGGCTAGCCCAGCCG
GACATGGTGTCTGCAGCCACTACTGAAGAGGCCAGGCTGAGTTGGCCACTAGCAGAAGGAGCAG
ACAAGAGCCCACTGAGGGTCCTCAGCACGACAGAGTCACTTCTTCGACTGCAGAGGACACAGAG
GGTGTGGCAGGTCCCCGAGCTGGACGCTGAGCATGCCAAGGCCTTTCTCAAGCCGTGGCCACTG
GGGAGCTTCCTGGTCATCGGGCAGGACCCTGACCAGGTCCTGATGTTGAAGACAGGACCTTCGT
CAGGAGATATCAACACCTACCAAATTCAGAAGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAA
CCTCTGCATGCCAGACTTTCCTCATCTCCTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCA
AGGACTCTGCTCTTGCCCACACCTACTGTGGGGCCTGGAGATAAGCACTCAGATCCTCGTCGAC
TTGGCTGCATCCAGGTGGACACCTCAGGGAGGGTGCTGTCTGTGGTGAACCAGCTCTACCTGGA
GACCCATGGAGGCTGGGAAACAGAAACACCGCAGCAAACAAAGCCAGAAACTGGCCAGAAACGC
AGTCTAGCCCCCAGGATGCCCACTCCACACCGGGTCTCCTGGGTGGAAGAGTCTCTGAAACCGG
AAGCTCACCATACTGGACAGGAAGTGCATCATCCAGAAAGACAAGTGCATTATCCTGGACCAGA
AGCTCACTCTCTTGGGCCAGAAGTACACTTTCCTAGTCCTGTTCTAGAAGAGGAGGAAGAAGTG
AACAATGACAGCTACAAGGATGAAGAGGAAGGCTGCGAGGATATGCTCACTGCCCACATCCGTG
CTCTGGCCAGTGCCCGGAGCAGTTATGTAGCCAGGCAGTACCAATGCCTTCGAGCACGACTCAT
CTCAGATTCTGGAAATCCCTACAGCCCAGGGGACCCAGCCACAGAGCTGCTTCAGGATGTACGC
CAGCTCCTCACTGACCTCCAGGATTACCTGGCAAAAGACCCCGATGTCAGAGCTGTCTTTGGGA
ATAGGGGACCTAGCATCCCTCGGGAAGAAGATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCG
AGCGGTTCTGGAGCCCCTGAAGCCCGCCCTGTGGACCAAACTCCGAACTCTCAGAGCCCAGGAA
CTGCGGCGACTGCGCCGGCGCCAAATAGCCTTGAGGGTAGGAGCAGGACCCGAGGGACAGAGCC
CGGCCTTGCGGAACCGTATCCACGCACGCCTCGCTCACCTGCACGCAGCGTGCGCCCCGCGCCG
CAAGGTGGCGCTGTTGTTGGCGGTGTGCAGCGATGTCTATGCAGGCCTGGCTGGCGGCGAGAAT
AAAGGACCTGTCCTCTGGCTTCCTTAGAGCCCCTGGGGGCTGACGCCTTTTTACCTGCCCTGAC
CGAGGAGCTGATCTGGAGTCCACATATTG

hide sequence

RefSeq Acc Id:

XM_006228657 ⟹ XP_006228719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,796 - 93,214,957 (+)	NCBI
mRatBN7.2	1	84,077,270 - 84,088,590 (+)	NCBI
Rnor_6.0	1	86,972,252 - 86,982,420 (+)	NCBI
Rnor_5.0	1	88,153,128 - 88,164,438 (+)	NCBI

Sequence:

show sequence

TCCTGCTGCTCAGGCTCCCCTCGGAACAGCTCCATCTTTGACCTTTTGTTCCTGGGCTATCCCT
GCCTCTTGGACCCCACCTCAGTGGCCAGCCTCCACCATGACCCTTGGCCTCCTGGAACCTGTAC
ATTCCAGGCTGAGTTGGCCACTAGCAGAAGGAGCAGACAAGAGCCCACTGAGGGTCCTCAGCAC
GACAGAGTCACTTCTTCGACTGCAGAGGACACAGAGGGTGTGGCAGGTCCCCGAGCTGGACGCT
GAGCATGCCAAGGCCTTTCTCAAGCCGTGGCCACTGGGGAGCTTCCTGGTCATCGGGCAGGACC
CTGACCAGGTCCTGATGTTGAAGACAGGACCTTCGTCAGGAGATATCAACACCTACCAAATTCA
GAAGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAACCTCTGCATGCCAGACTTTCCTCATCTC
CTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCAAGGACTCTGCTCTTGCCCACACCTACTG
TGGGGCCTGGAGATAAGCACTCAGATCCTCGTCGACTTGGCTGCATCCAGGTGGACACCTCAGG
GAGGGTGCTGTCTGTGGTGAACCAGCTCTACCTGGAGACCCATGGAGGCTGGGAAACAGAAACA
CCGCAGCAAACAAAGCCAGAAACTGGCCAGAAACGCAGTCTAGCCCCCAGGATGCCCACTCCAC
ACCGGGTCTCCTGGGTGGAAGAGTCTCTGAAACCGGAAGCTCACCATACTGGACAGGAAGTGCA
TCATCCAGAAAGACAAGTGCATTATCCTGGACCAGAAGCTCACTCTCTTGGGCCAGAAGTACAC
TTTCCTAGTCCTGTTCTAGAAGAGGAGGAAGAAGTGAACAATGACAGCTACAAGGATGAAGAGG
AAGGCTGCGAGGATATGCTCACTGCCCACATCCGTGCTCTGGCCAGTGCCCGGAGCAGTTATGT
AGCCAGGCAGTACCAATGCCTTCGAGCACGACTCATCTCAGATTCTGGAAATCCCTACAGCCCA
GGGGACCCAGCCACAGAGCTGCTTCAGGATGTACGCCAGCTCCTCACTGACCTCCAGGATTACC
TGGCAAAAGACCCCGATGTCAGAGCTGTCTTTGGGAATAGGGGACCTAGCATCCCTCGGGAAGA
AGATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCGAGCGGTTCTGGAGCCCCTGAAGCCCGCC
CTGTGGACCAAACTCCGAACTCTCAGAGCCCAGGAACTGCGGCGACTGCGCCGGCGCCAAATAG
CCTTGAGGGTAGGAGCAGGACCCGAGGGACAGAGCCCGGCCTTGCGGAACCGTATCCACGCACG
CCTCGCTCACCTGCACGCAGCGTGCGCCCCGCGCCGCAAGGTGGCGCTGTTGTTGGCGGTGTGC
AGCGATGTCTATGCAGGCCTGGCTGGCGGCGAGAATAAAGAGCCCCTGGGGGCTGACGCCTTTT
TACCTGCCCTGACCGAGGAGCTGATCTGGAGTCCACATATTGGGGAAACACAGCTGGATGTGGA
GTTTCTTATGGAGCTCTTGGATCCAGGGGAGTTGCGAGGAGAAGCTGGGTATTATCTTACCACG
TGGTTTGGGGCTCTCTACCACATTGCTCACTACCAGCCTGATGCTGGCCGTGCACCCCAGGAGC
TCAGCTCTGAGGCCCGGGCCTCCTTGCGCCAGTGGCACCGAAGACGGACACTGCACCAGCAAGC
CCAGCCCACAGCCCCGGAAAACCAGCCCTTTGAGGAGCCATGGGCAATAGGGGACCCATGATGA
TTGGAGTCCTCAAAAATCAGTCTCCAGAACCTTTTGGCCCACTCCTCTGCTAAGCAAGATTCTG
GAGGCATCTGGGTCAGCACAGTGGGTGGGGCAGAAAAAAGGACGTGGCGTTTTGCACTGGCTGT
TCCTACTTCCTTCCTTCCCCTCCTGGTCTGTCCACATGTTACCTCAATGAGGCTCTCCCCAGCA
AACAAAACCAACGCCTAAACAATACTACAACTACAGCCCTCTCACCTGAATCTCTCTGGGGCAG
GTAGAATAAAGGCACAGTCCCCAAAAGGTATCTACATCCTGA

hide sequence

RefSeq Acc Id:

XM_039104237 ⟹ XP_038960165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,832 - 93,214,957 (+)	NCBI
mRatBN7.2	1	84,077,188 - 84,088,590 (+)	NCBI

RefSeq Acc Id:

XM_063283399 ⟹ XP_063139469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,204,804 - 93,214,957 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099711	(Get FASTA)	NCBI Sequence Viewer
	NP_001424362	(Get FASTA)	NCBI Sequence Viewer
	NP_001424363	(Get FASTA)	NCBI Sequence Viewer
	NP_001424364	(Get FASTA)	NCBI Sequence Viewer
	XP_006228715	(Get FASTA)	NCBI Sequence Viewer
	XP_006228717	(Get FASTA)	NCBI Sequence Viewer
	XP_006228718	(Get FASTA)	NCBI Sequence Viewer
	XP_006228719	(Get FASTA)	NCBI Sequence Viewer
	XP_038960165	(Get FASTA)	NCBI Sequence Viewer
	XP_063139469	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07873	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034246
	ENSRNOP00000034246.3
	ENSRNOP00000073226
	ENSRNOP00000073226.2
	ENSRNOP00000106412
	ENSRNOP00000106412.1

RefSeq Acc Id:

NP_001099711 ⟸ NM_001106241

- UniProtKB:

D3ZP73 (UniProtKB/TrEMBL), A6J9L1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLAQPDMVSAATTEEARLSWPLAEGADKSPLRVLSTTESLLRLQRTQRVWQVPELDAEHAKAF
LKPWPLGSFLVIGQDPDQVLMLKTGPSSGDINTYQIQKFPGGVSLESSNLCMPDFPHLLAFLSA
SRDVLPRTLLLPTPTVGPGDKHSDPRRLGCIQVDTSGRVLSVVNQLYLETHGGWETETPQQTKP
ETGQKRSLAPRMPTPHRVSWVEESLKPEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVL
EEEEEVNNDSYKDEEEGCEDMLTAHIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATE
LLQDVRQLLTDLQDYLAKDPDVRAVFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLR
TLRAQELRRLRRRQIALRVGAGPEGQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAG
LAGGENKEPLGADAFLPALTEELIWSPHIGETQLDVEFLMELLDPGELRGEAGYYLTTWFGALY
HIAHYQPDAGRAPQELSSEARASLRQWHRRRTLHQQAQPTAPENQPFEEPWAIGDP

hide sequence

RefSeq Acc Id:

XP_006228715 ⟸ XM_006228653

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAGAKRCPWRGSLVTFHPDCRPDRGPLLQSGSLKNDPLEREEGDFKCPSPASSPASLASSLEN
TFTSCCSGSPRNSSCPSWSSLESCLPPCQRPKHGSLVPGSMRLAQPDMVSAATTEEARLSWPLA
EGADKSPLRVLSTTESLLRLQRTQRVWQVPELDAEHAKAFLKPWPLGSFLVIGQDPDQVLMLKT
GPSSGDINTYQIQKFPGGVSLESSNLCMPDFPHLLAFLSASRDVLPRTLLLPTPTVGPGDKHSD
PRRLGCIQVDTSGRVLSVVNQLYLETHGGWETETPQQTKPETGQKRSLAPRMPTPHRVSWVEES
LKPEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVLEEEEEVNNDSYKDEEEGCEDMLTA
HIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATELLQDVRQLLTDLQDYLAKDPDVRA
VFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLRTLRAQELRRLRRRQIALRVGAGPE
GQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAGLAGGENKEPLGADAFLPALTEELI
WSPHIGETQLDVEFLMELLDPGELRGEAGYYLTTWFGALYHIAHYQPDAGRAPQELSSEARASL
RQWHRRRTLHQQAQPTAPENQPFEEPWAIGDP

hide sequence

RefSeq Acc Id:

XP_006228717 ⟸ XM_006228655

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAAGAKRCPWRGSLVTFHPDCRPDRGPLLQSGSLKNDPLEREEGDFKCPSPASSPASLASSLEN
TFTSCCSGSPRNSSCPSWSSLESCLPPCQRPKHGSLVPGSMRLAQPDMVSAATTEEARLSWPLA
EGADKSPLRVLSTTESLLRLQRTQRVWQVPELDAEHAKAFLKPWPLGSFLVIGQDPDQVLMLKT
GPSSGDINTYQIQKFPGGVSLESSNLCMPDFPHLLAFLSASRDVLPRTLLLPTPTVGPGDKHSD
PRRLGCIQVDTSGRVLSVVNQLYLETHGGWETETPQQTKPETGQKRSLAPRMPTPHRVSWVEES
LKPEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVLEEEEEVNNDSYKDEEEGCEDMLTA
HIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATELLQDVRQLLTDLQDYLAKDPDVRA
VFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLRTLRAQELRRLRRRQIALRVGAGPE
GQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAGLAGGENKAGYYLTTWFGALYHIAH
YQPDAGRAPQELSSEARASLRQWHRRRTLHQQAQPTAPENQPFEEPWAIGDP

hide sequence

RefSeq Acc Id:

XP_006228718 ⟸ XM_006228656

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAAGAKRCPWRGSLVTFHPDCRPDRGPLLQSGSLKNDPLEREEGDFKCPSPASSPASLASSLEN
TFTSCCSGSPRNSSCPSWSSLESCLPPCQRPKHGSLVPGSMRLAQPDMVSAATTEEARLSWPLA
EGADKSPLRVLSTTESLLRLQRTQRVWQVPELDAEHAKAFLKPWPLGSFLVIGQDPDQVLMLKT
GPSSGDINTYQIQKFPGGVSLESSNLCMPDFPHLLAFLSASRDVLPRTLLLPTPTVGPGDKHSD
PRRLGCIQVDTSGRVLSVVNQLYLETHGGWETETPQQTKPETGQKRSLAPRMPTPHRVSWVEES
LKPEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVLEEEEEVNNDSYKDEEEGCEDMLTA
HIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATELLQDVRQLLTDLQDYLAKDPDVRA
VFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLRTLRAQELRRLRRRQIALRVGAGPE
GQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAGLAGGENKGPVLWLP

hide sequence

RefSeq Acc Id:

XP_006228719 ⟸ XM_006228657

- Peptide Label:

isoform X6

- Sequence:

show sequence

MTLGLLEPVHSRLSWPLAEGADKSPLRVLSTTESLLRLQRTQRVWQVPELDAEHAKAFLKPWPL
GSFLVIGQDPDQVLMLKTGPSSGDINTYQIQKFPGGVSLESSNLCMPDFPHLLAFLSASRDVLP
RTLLLPTPTVGPGDKHSDPRRLGCIQVDTSGRVLSVVNQLYLETHGGWETETPQQTKPETGQKR
SLAPRMPTPHRVSWVEESLKPEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVLEEEEEV
NNDSYKDEEEGCEDMLTAHIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATELLQDVR
QLLTDLQDYLAKDPDVRAVFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLRTLRAQE
LRRLRRRQIALRVGAGPEGQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAGLAGGEN
KEPLGADAFLPALTEELIWSPHIGETQLDVEFLMELLDPGELRGEAGYYLTTWFGALYHIAHYQ
PDAGRAPQELSSEARASLRQWHRRRTLHQQAQPTAPENQPFEEPWAIGDP

hide sequence

Ensembl Acc Id:

ENSRNOP00000073226 ⟸ ENSRNOT00000078156

Ensembl Acc Id:

ENSRNOP00000034246 ⟸ ENSRNOT00000036907

RefSeq Acc Id:	XP_038960165 ⟸ XM_039104237
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063139469 ⟸ XM_063283399
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000106412 ⟸ ENSRNOT00000139379

Protein Domains

VPS9

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZP73-F1-model_v2	AlphaFold	D3ZP73	1-568	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689885

Promoter ID:

EPDNEW_R409

Type:

multiple initiation site

Name:

Rinl_1

Description:

Ras and Rab interactor-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,972,248 - 86,972,308	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310133	AgrOrtholog
BioCyc Gene	G2FUF-60219	BioCyc
Ensembl Genes	ENSRNOG00000025354	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036907	ENTREZGENE
	ENSRNOT00000036907.6	UniProtKB/TrEMBL
	ENSRNOT00000078156	ENTREZGENE
	ENSRNOT00000078156.3	UniProtKB/TrEMBL
	ENSRNOT00000139379	ENTREZGENE
	ENSRNOT00000139379.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1050.80	UniProtKB/TrEMBL
InterPro	SH2_dom_sf	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
	Vps9-like	UniProtKB/TrEMBL
	VPS9_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:292760	UniProtKB/TrEMBL
NCBI Gene	292760	ENTREZGENE
PANTHER	PTHR23101	UniProtKB/TrEMBL
	RAS AND RAB INTERACTOR-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	RIN1	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
PhenoGen	Rinl	PhenoGen
PROSITE	VPS9	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025354	RatGTEx
SMART	VPS9	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109993	UniProtKB/TrEMBL
	SSF55550	UniProtKB/TrEMBL
UniProt	A0A0G2K4Y9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LVM0_RAT	UniProtKB/TrEMBL
	A6J9L1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZP73	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-16	Rinl	Ras and Rab interactor-like	RGD1310133	similar to RIKEN cDNA 5830482F20 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310133	similar to RIKEN cDNA 5830482F20 gene	RGD1310133_predicted	similar to RIKEN cDNA 5830482F20 gene (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310133_predicted	similar to RIKEN cDNA 5830482F20 gene (predicted)	LOC292760_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC292760_predicted	similar to RIKEN cDNA 5830482F20 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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