Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) Rattus norvegicus
Analyze
Symbol: Cplane1
Name: ciliogenesis and planar polarity effector complex subunit 1
RGD ID: 1310081
Description: Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; heart development; and protein localization to ciliary transition zone. Predicted to be active in ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome 17 and Joubert syndrome with orofaciodigital defect. Orthologous to human CPLANE1 (ciliogenesis and planar polarity effector complex subunit 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ciliogenesis and planar polarity effector 1; hypothetical protein LOC679830; hypothetical protein LOC679859; LOC294784; LOC679830; LOC679859; RGD1310081; RGD1310081_predicted; similar to hypothetical protein FLJ13231; similar to hypothetical protein FLJ13231 (predicted); uncharacterized protein C5orf42 homolog; uncharacterized protein LOC310137
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8258,996,119 - 59,096,817 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl258,996,130 - 59,096,817 (+)EnsemblGRCr8
mRatBN7.2257,269,195 - 57,369,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd259,197,499 - 59,298,186 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive259,251,797 - 59,352,484 (+)NCBILyon_Normotensive
Lyon_Hypertensive259,103,240 - 59,203,187 (+)NCBILyon_Hypertensive
F344_StmMcwi258,916,010 - 59,016,697 (+)NCBIF344_StmMcwi
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)Ensemblrn6Rnor6.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera252,883,480 - 52,984,165 (+)NCBICelera
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Cytogenetic Map2q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies. Damerla RR, etal., Hum Mol Genet. 2015 Jul 15;24(14):3994-4005. doi: 10.1093/hmg/ddv137. Epub 2015 Apr 15.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:25807483  


Genomics

Comparative Map Data
Cplane1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8258,996,119 - 59,096,817 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl258,996,130 - 59,096,817 (+)EnsemblGRCr8
mRatBN7.2257,269,195 - 57,369,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd259,197,499 - 59,298,186 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive259,251,797 - 59,352,484 (+)NCBILyon_Normotensive
Lyon_Hypertensive259,103,240 - 59,203,187 (+)NCBILyon_Hypertensive
F344_StmMcwi258,916,010 - 59,016,697 (+)NCBIF344_StmMcwi
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)Ensemblrn6Rnor6.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera252,883,480 - 52,984,165 (+)NCBICelera
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Cytogenetic Map2q16NCBI
CPLANE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38537,075,669 - 37,249,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl537,106,228 - 37,249,400 (-)Ensemblhg38GRCh38
GRCh37537,106,337 - 37,249,478 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36537,142,087 - 37,249,612 (-)NCBIBuild 36Build 36hg18NCBI36
Celera536,993,297 - 37,136,467 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef537,059,009 - 37,201,999 (-)NCBIHuRef
CHM1_1537,109,131 - 37,252,316 (-)NCBICHM1_1
T2T-CHM13v2.0537,319,464 - 37,499,342 (-)NCBIT2T-CHM13v2.0
Cplane1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,198,509 - 8,300,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,198,590 - 8,300,642 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38158,169,025 - 8,271,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,169,106 - 8,271,158 (+)Ensemblmm10GRCm38
MGSCv37158,119,106 - 8,221,158 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36158,116,266 - 8,218,373 (+)NCBIMGSCv36mm8
Celera158,013,530 - 8,115,870 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Cplane1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,868,017 - 21,983,747 (-)Ensembl
ChiLan1.0NW_00495542621,867,876 - 21,991,889 (-)NCBIChiLan1.0ChiLan1.0
CPLANE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2473,086,158 - 73,229,014 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1571,239,850 - 71,382,655 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0573,122,305 - 73,265,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1578,402,466 - 78,544,807 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl578,402,466 - 78,544,807 (+)EnsemblpanPan2panpan1.1
CPLANE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1471,435,994 - 71,567,567 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl471,430,575 - 71,567,267 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha471,040,347 - 71,177,378 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0471,939,865 - 72,077,171 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl471,939,851 - 72,077,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1471,687,689 - 71,824,420 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0471,808,054 - 71,946,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0472,340,676 - 72,477,998 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cplane1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365184,706,500 - 4,847,316 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPLANE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1622,380,326 - 22,500,998 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11622,381,001 - 22,501,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21623,534,129 - 23,653,296 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPLANE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,981,299 - 36,131,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,979,110 - 36,130,565 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607126,323,302 - 26,479,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cplane1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475917,763,585 - 17,855,954 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475917,763,200 - 17,879,603 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cplane1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13172,236,903 - 172,334,107 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cplane1
527 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:65
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000063899
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25838820177302351Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
RH143089  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,301,723 - 57,301,988 (+)MAPPERmRatBN7.2
Rnor_6.0257,306,849 - 57,307,113NCBIRnor6.0
Rnor_5.0277,314,151 - 77,314,415UniSTSRnor5.0
RGSC_v3.4257,811,779 - 57,812,043UniSTSRGSC3.4
Celera252,916,304 - 52,916,568UniSTS
RH 3.4 Map2331.9UniSTS
Cytogenetic Map2q16UniSTS
RH143471  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,310,492 - 57,310,668 (+)MAPPERmRatBN7.2
Rnor_6.0257,315,687 - 57,315,862NCBIRnor6.0
Rnor_5.0277,322,657 - 77,322,832UniSTSRnor5.0
RGSC_v3.4257,820,331 - 57,820,506UniSTSRGSC3.4
Celera252,925,105 - 52,925,280UniSTS
RH 3.4 Map2283.7UniSTS
Cytogenetic Map2q16UniSTS
RH138393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,369,322 - 57,369,447 (+)MAPPERmRatBN7.2
Rnor_6.0257,472,204 - 57,472,328NCBIRnor6.0
Rnor_5.0278,957,102 - 78,957,226UniSTSRnor5.0
RGSC_v3.4257,879,238 - 57,879,362UniSTSRGSC3.4
Celera252,983,904 - 52,984,028UniSTS
RH 3.4 Map2331.7UniSTS
Cytogenetic Map2q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 90 89 58 87 58 6 349 187 11 140 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000063899   ⟹   ENSRNOP00000060886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl258,996,130 - 59,096,817 (+)Ensembl
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)Ensembl
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159645   ⟹   ENSRNOP00000110500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl258,996,130 - 59,096,817 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161521   ⟹   ENSRNOP00000099282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl258,996,130 - 59,096,817 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173401   ⟹   ENSRNOP00000099291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl258,996,130 - 59,096,817 (+)Ensembl
RefSeq Acc Id: NM_001427186   ⟹   NP_001414115
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,130 - 59,096,817 (+)NCBI
Dahl_SR_JrHsd259,197,499 - 59,298,186 (+)NCBI
Lyon_Normotensive259,251,797 - 59,352,484 (+)NCBI
Lyon_Hypertensive259,103,240 - 59,203,187 (+)NCBI
F344_StmMcwi258,916,010 - 59,016,697 (+)NCBI
RefSeq Acc Id: XM_039103529   ⟹   XP_038959457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103531   ⟹   XP_038959459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103535   ⟹   XP_038959463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,030,246 - 59,096,817 (+)NCBI
mRatBN7.2257,303,005 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_063281736   ⟹   XP_063137806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281737   ⟹   XP_063137807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281738   ⟹   XP_063137808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281739   ⟹   XP_063137809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281740   ⟹   XP_063137810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281741   ⟹   XP_063137811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,096,817 (+)NCBI
RefSeq Acc Id: XM_063281742   ⟹   XP_063137812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,119 - 59,086,819 (+)NCBI
RefSeq Acc Id: XM_063281743   ⟹   XP_063137813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8258,996,438 - 59,058,683 (+)NCBI
Ensembl Acc Id: ENSRNOP00000060886   ⟸   ENSRNOT00000063899
RefSeq Acc Id: XP_038959457   ⟸   XM_039103529
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959459   ⟸   XM_039103531
- Peptide Label: isoform X11
- UniProtKB: D3ZK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959463   ⟸   XM_039103535
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063137806   ⟸   XM_063281736
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137811   ⟸   XM_063281741
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063137808   ⟸   XM_063281738
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063137807   ⟸   XM_063281737
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063137809   ⟸   XM_063281739
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063137810   ⟸   XM_063281740
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063137812   ⟸   XM_063281742
- Peptide Label: isoform X8
RefSeq Acc Id: NP_001414115   ⟸   NM_001427186
RefSeq Acc Id: XP_063137813   ⟸   XM_063281743
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000099282   ⟸   ENSRNOT00000161521
Ensembl Acc Id: ENSRNOP00000110500   ⟸   ENSRNOT00000159645
Ensembl Acc Id: ENSRNOP00000099291   ⟸   ENSRNOT00000173401

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZK35-F1-model_v2 AlphaFold D3ZK35 1-2628 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310081 AgrOrtholog
BioCyc Gene G2FUF-54123 BioCyc
Ensembl Genes ENSRNOG00000042118 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063899 ENTREZGENE
  ENSRNOT00000063899.5 UniProtKB/TrEMBL
  ENSRNOT00000159645 ENTREZGENE
  ENSRNOT00000159645.1 UniProtKB/TrEMBL
  ENSRNOT00000161521 ENTREZGENE
  ENSRNOT00000161521.1 UniProtKB/TrEMBL
  ENSRNOT00000173401.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134040 IMAGE-MGC_LOAD
InterPro Joubert UniProtKB/TrEMBL
MGC_CLONE MGC:95272 IMAGE-MGC_LOAD
NCBI Gene Cplane1 ENTREZGENE
PANTHER CILIOGENESIS AND PLANAR POLARITY EFFECTOR 1 UniProtKB/TrEMBL
  PTHR14492 UniProtKB/TrEMBL
Pfam Joubert UniProtKB/TrEMBL
PhenoGen Cplane1 PhenoGen
RatGTEx ENSRNOG00000042118 RatGTEx
UniProt A0ABK0L4M2_RAT UniProtKB/TrEMBL
  A0ABK0LDY5_RAT UniProtKB/TrEMBL
  A0ABK0M4Z7_RAT UniProtKB/TrEMBL
  D3ZK35 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-09 Cplane1  ciliogenesis and planar polarity effector complex subunit 1  Cplane1  ciliogenesis and planar polarity effector 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-22 Cplane1  ciliogenesis and planar polarity effector 1  RGD1310081  similar to hypothetical protein FLJ13231  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 RGD1310081  similar to hypothetical protein FLJ13231  LOC679830  hypothetical protein LOC679830  Data merged from RGD:1583658 737654 PROVISIONAL
2015-07-29 RGD1310081  similar to hypothetical protein FLJ13231  LOC679859  hypothetical protein LOC679859  Data merged from RGD:1583630 737654 PROVISIONAL
2008-04-30 RGD1310081  similar to hypothetical protein FLJ13231   RGD1310081_predicted  similar to hypothetical protein FLJ13231 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 LOC679859  hypothetical protein LOC679859  LOC679460  hypothetical protein LOC679460  Data merged from RGD:1588306 1643240 APPROVED
2008-01-09 LOC679830  hypothetical protein LOC679830  LOC679442  hypothetical protein LOC679442  Data merged from RGD:1588321 1643240 APPROVED
2006-11-19 LOC679830  hypothetical protein LOC679830      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679859  hypothetical protein LOC679859      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679442  hypothetical protein LOC679442      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679460  hypothetical protein LOC679460      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310081_predicted  similar to hypothetical protein FLJ13231 (predicted)  LOC294784_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294784_predicted  similar to hypothetical protein FLJ13231 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL