B3gnt2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: B3gnt2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2) Rattus norvegicus
Analyze
Symbol: B3gnt2
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
RGD ID: 1310077
Description: Predicted to enable N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process and protein O-linked glycosylation. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; protein glycosylation; and sensory perception of smell. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2); PARTICIPATES IN keratan sulfate biosynthetic pathway; lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B3gnt1; LOC305571; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,009,682 - 101,034,507 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14100,967,131 - 101,043,412 (-)EnsemblGRCr8
mRatBN7.21496,808,473 - 96,833,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,806,664 - 96,835,273 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14101,147,734 - 101,172,683 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,390,022 - 102,414,973 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,861,634 - 98,886,586 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,592,336 - 107,617,189 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,592,336 - 107,617,161 (-)Ensemblrn6Rnor6.0
Rnor_5.014107,652,782 - 107,677,930 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414103,499,471 - 103,524,296 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1495,796,439 - 95,821,264 (-)NCBICelera
RGSC_v3.114103,519,717 - 103,542,783 (-)NCBI
Cytogenetic Map14q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bortezomib  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
keratan sulfate  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
melphalan  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ochratoxin A  (EXP,ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IBA,IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9892646   PMID:11042166   PMID:15728829   PMID:20439489   PMID:23006775   PMID:23376485   PMID:25279697  


Genomics

Comparative Map Data
B3gnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,009,682 - 101,034,507 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14100,967,131 - 101,043,412 (-)EnsemblGRCr8
mRatBN7.21496,808,473 - 96,833,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,806,664 - 96,835,273 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14101,147,734 - 101,172,683 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,390,022 - 102,414,973 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,861,634 - 98,886,586 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,592,336 - 107,617,189 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,592,336 - 107,617,161 (-)Ensemblrn6Rnor6.0
Rnor_5.014107,652,782 - 107,677,930 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414103,499,471 - 103,524,296 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1495,796,439 - 95,821,264 (-)NCBICelera
RGSC_v3.114103,519,717 - 103,542,783 (-)NCBI
Cytogenetic Map14q22NCBI
B3GNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38262,196,115 - 62,224,731 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl262,195,485 - 62,224,731 (+)Ensemblhg38GRCh38
GRCh37262,423,250 - 62,451,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36262,276,766 - 62,305,370 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34262,334,924 - 62,363,515NCBI
Celera262,267,974 - 62,296,577 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef262,161,876 - 62,190,478 (+)NCBIHuRef
CHM1_1262,353,514 - 62,382,109 (+)NCBICHM1_1
T2T-CHM13v2.0262,202,342 - 62,230,957 (+)NCBIT2T-CHM13v2.0
B3gnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,784,739 - 22,810,336 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1122,709,738 - 22,810,961 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381122,834,739 - 22,860,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,759,738 - 22,860,961 (-)Ensemblmm10GRCm38
MGSCv371122,734,739 - 22,760,336 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361122,734,747 - 22,765,435 (-)NCBIMGSCv36mm8
Celera1124,970,900 - 24,996,043 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
B3gnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,859,901 - 21,888,722 (-)Ensembl
ChiLan1.0NW_00495542421,859,901 - 21,888,722 (-)NCBIChiLan1.0ChiLan1.0
B3GNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21264,159,753 - 64,188,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A64,163,703 - 64,192,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A62,276,662 - 62,305,286 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A63,409,166 - 63,437,801 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,435,289 - 63,436,482 (+)EnsemblpanPan2panpan1.1
B3GNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,170,262 - 62,239,010 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,145,117 - 62,146,310 (+)EnsemblcanFam3CanFam3.1
CanFam3.1 Ensembl1062,145,117 - 62,146,310 (+)NCBIcanFam3CanFam3.1
Dog10K_Boxer_Tasha1062,006,771 - 62,127,039 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01063,126,016 - 63,246,466 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,894,295 - 63,154,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11062,809,530 - 62,929,648 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01063,112,620 - 63,232,848 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01063,409,638 - 63,529,912 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B3gnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,059,873 - 21,089,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364917,482,239 - 7,510,762 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364917,482,226 - 7,511,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,670,748 - 79,704,000 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1379,671,393 - 79,704,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,442,753 - 83,475,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11444,748,997 - 44,776,815 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1444,750,308 - 44,751,501 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 Ensembl1444,750,308 - 44,751,501 (-)NCBIChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604567,161,807 - 67,312,818 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,202,143 - 11,403,617 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
B3gnt2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11194,050,354 - 94,074,639 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in B3gnt2
239 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:374
Count of miRNA genes:215
Interacting mature miRNAs:264
Transcripts:ENSRNOT00000012286
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat

Markers in Region
RH130434  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr814101,009,779 - 101,009,971 (+)Marker Load Pipeline
mRatBN7.21496,808,570 - 96,808,762 (+)MAPPERmRatBN7.2
Rnor_6.014107,592,434 - 107,592,625NCBIRnor6.0
Rnor_5.014107,652,880 - 107,653,071UniSTSRnor5.0
RGSC_v3.414103,499,569 - 103,499,760UniSTSRGSC3.4
Celera1495,796,537 - 95,796,728UniSTS
RH 3.4 Map14765.1UniSTS
Cytogenetic Map14q22UniSTS
RH143416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,810,689 - 96,810,986 (+)MAPPERmRatBN7.2
Rnor_6.014107,594,553 - 107,594,849NCBIRnor6.0
Rnor_5.014107,654,999 - 107,655,295UniSTSRnor5.0
RGSC_v3.414103,501,688 - 103,501,984UniSTSRGSC3.4
Celera1495,798,656 - 95,798,952UniSTS
RH 3.4 Map14764.3UniSTS
Cytogenetic Map14q22UniSTS
BE105706  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,834,854 - 96,835,048 (+)MAPPERmRatBN7.2
Rnor_6.014107,618,718 - 107,618,911NCBIRnor6.0
Rnor_5.014107,679,366 - 107,679,559UniSTSRnor5.0
RGSC_v3.414103,525,853 - 103,526,046UniSTSRGSC3.4
Celera1495,822,821 - 95,823,014UniSTS
RH 3.4 Map14772.5UniSTS
Cytogenetic Map14q22UniSTS
AU049826  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,823,084 - 96,823,230 (+)MAPPERmRatBN7.2
Rnor_6.014107,606,948 - 107,607,093NCBIRnor6.0
Rnor_5.014107,667,394 - 107,667,539UniSTSRnor5.0
RGSC_v3.414103,514,083 - 103,514,228UniSTSRGSC3.4
Celera1495,811,051 - 95,811,196UniSTS
Cytogenetic Map14q22UniSTS
UniSTS:495936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,810,473 - 96,810,627 (+)MAPPERmRatBN7.2
Rnor_6.014107,594,337 - 107,594,490NCBIRnor6.0
Rnor_5.014107,654,783 - 107,654,936UniSTSRnor5.0
RGSC_v3.414103,501,472 - 103,501,625UniSTSRGSC3.4
Celera1495,798,440 - 95,798,593UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012286   ⟹   ENSRNOP00000012286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,009,682 - 101,034,507 (-)Ensembl
mRatBN7.2 Ensembl1496,808,473 - 96,833,298 (-)Ensembl
Rnor_6.0 Ensembl14107,592,336 - 107,617,161 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097052   ⟹   ENSRNOP00000088451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14100,979,197 - 101,036,372 (-)Ensembl
mRatBN7.2 Ensembl1496,806,664 - 96,835,273 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101143   ⟹   ENSRNOP00000094034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,001,730 - 101,034,236 (-)Ensembl
mRatBN7.2 Ensembl1496,808,230 - 96,827,700 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118515   ⟹   ENSRNOP00000084684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,005,176 - 101,034,236 (-)Ensembl
mRatBN7.2 Ensembl1496,807,064 - 96,831,954 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120300   ⟹   ENSRNOP00000089888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,008,652 - 101,043,412 (-)Ensembl
mRatBN7.2 Ensembl1496,807,064 - 96,832,924 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122256   ⟹   ENSRNOP00000100239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,009,671 - 101,036,372 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133832   ⟹   ENSRNOP00000103600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14100,975,582 - 101,034,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135825   ⟹   ENSRNOP00000102032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,009,296 - 101,021,961 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145461   ⟹   ENSRNOP00000105103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14100,967,131 - 101,034,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156937   ⟹   ENSRNOP00000108904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,001,712 - 101,036,372 (-)Ensembl
RefSeq Acc Id: NM_001107240   ⟹   NP_001100710
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,009,682 - 101,034,507 (-)NCBI
mRatBN7.21496,808,473 - 96,833,298 (-)NCBI
Rnor_6.014107,592,336 - 107,617,161 (-)NCBI
Rnor_5.014107,652,782 - 107,677,930 (-)NCBI
RGSC_v3.414103,499,471 - 103,524,296 (-)RGD
Celera1495,796,439 - 95,821,264 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251555   ⟹   XP_006251617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,009,684 - 101,034,269 (-)NCBI
mRatBN7.21496,808,475 - 96,833,055 (-)NCBI
Rnor_6.014107,592,338 - 107,616,870 (-)NCBI
Rnor_5.014107,652,782 - 107,677,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251556   ⟹   XP_006251618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,009,684 - 101,034,483 (-)NCBI
mRatBN7.21496,808,475 - 96,833,266 (-)NCBI
Rnor_6.014107,592,338 - 107,617,189 (-)NCBI
Rnor_5.014107,652,782 - 107,677,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770427   ⟹   XP_008768649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,009,684 - 101,029,042 (-)NCBI
mRatBN7.21496,808,475 - 96,827,664 (-)NCBI
Rnor_6.014107,592,338 - 107,612,894 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063273266   ⟹   XP_063129336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,009,684 - 101,021,615 (-)NCBI
RefSeq Acc Id: NP_001100710   ⟸   NM_001107240
- UniProtKB: D3ZEF9 (UniProtKB/TrEMBL),   A6JQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251618   ⟸   XM_006251556
- Peptide Label: isoform X1
- UniProtKB: D3ZEF9 (UniProtKB/TrEMBL),   A6JQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251617   ⟸   XM_006251555
- Peptide Label: isoform X1
- UniProtKB: D3ZEF9 (UniProtKB/TrEMBL),   A6JQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768649   ⟸   XM_008770427
- Peptide Label: isoform X1
- UniProtKB: D3ZEF9 (UniProtKB/TrEMBL),   A6JQ57 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012286   ⟸   ENSRNOT00000012286
Ensembl Acc Id: ENSRNOP00000094034   ⟸   ENSRNOT00000101143
Ensembl Acc Id: ENSRNOP00000084684   ⟸   ENSRNOT00000118515
Ensembl Acc Id: ENSRNOP00000089888   ⟸   ENSRNOT00000120300
Ensembl Acc Id: ENSRNOP00000088451   ⟸   ENSRNOT00000097052
RefSeq Acc Id: XP_063129336   ⟸   XM_063273266
- Peptide Label: isoform X1
- UniProtKB: A6JQ57 (UniProtKB/TrEMBL),   D3ZEF9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108904   ⟸   ENSRNOT00000156937
Ensembl Acc Id: ENSRNOP00000105103   ⟸   ENSRNOT00000145461
Ensembl Acc Id: ENSRNOP00000102032   ⟸   ENSRNOT00000135825
Ensembl Acc Id: ENSRNOP00000103600   ⟸   ENSRNOT00000133832
Ensembl Acc Id: ENSRNOP00000100239   ⟸   ENSRNOT00000122256

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEF9-F1-model_v2 AlphaFold D3ZEF9 1-397 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310077 AgrOrtholog
BioCyc Gene G2FUF-14800 BioCyc
BioCyc Pathway PWY-7837 [i antigen and I antigen biosynthesis] BioCyc
  PWY-7841 [neolacto-series glycosphingolipids biosynthesis] BioCyc
BioCyc Pathway Image PWY-7837 BioCyc
  PWY-7841 BioCyc
Ensembl Genes ENSRNOG00000009267 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012286 ENTREZGENE
  ENSRNOT00000012286.6 UniProtKB/TrEMBL
  ENSRNOT00000097052 ENTREZGENE
  ENSRNOT00000097052.2 UniProtKB/TrEMBL
  ENSRNOT00000101143.2 UniProtKB/TrEMBL
  ENSRNOT00000118515.2 UniProtKB/TrEMBL
  ENSRNOT00000120300 ENTREZGENE
  ENSRNOT00000120300.2 UniProtKB/TrEMBL
  ENSRNOT00000122256 ENTREZGENE
  ENSRNOT00000122256.1 UniProtKB/TrEMBL
  ENSRNOT00000133832.1 UniProtKB/TrEMBL
  ENSRNOT00000135825 ENTREZGENE
  ENSRNOT00000135825.1 UniProtKB/TrEMBL
  ENSRNOT00000145461.1 UniProtKB/TrEMBL
  ENSRNOT00000156937.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
KEGG Report rno:305571 UniProtKB/TrEMBL
NCBI Gene 305571 ENTREZGENE
PANTHER Glyco_trans_31 UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
PhenoGen B3gnt2 PhenoGen
RatGTEx ENSRNOG00000009267 RatGTEx
UniProt A6JQ57 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEF9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 B3gnt2  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2  B3gnt1_predicted  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 B3gnt1_predicted  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED