Iqcb1 (IQ motif containing B1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Iqcb1 (IQ motif containing B1) Rattus norvegicus
Analyze
Symbol: Iqcb1
Name: IQ motif containing B1
RGD ID: 1310069
Description: Predicted to enable several functions, including BBSome binding activity; calmodulin binding activity; and enzyme binding activity. Predicted to be involved in cilium assembly; maintenance of animal organ identity; and photoreceptor cell maintenance. Predicted to act upstream of or within cytosolic ciliogenesis. Predicted to be located in photoreceptor connecting cilium and photoreceptor outer segment. Predicted to be active in centrosome and cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Senior-Loken syndrome; nephronophthisis; and retinitis pigmentosa 3. Orthologous to human IQCB1 (IQ motif containing B1); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: IQ calmodulin-binding motif containing 1; IQ calmodulin-binding motif-containing protein 1; LOC303915; nephrocystin 5; NPHP5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,410,986 - 77,465,540 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1177,410,314 - 77,465,478 (-)EnsemblGRCr8
mRatBN7.21163,905,595 - 63,960,141 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,905,590 - 63,960,093 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1172,718,005 - 72,772,493 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,380,229 - 65,434,717 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,414,526 - 64,469,006 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,824,059 - 66,878,585 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,824,065 - 66,878,551 (-)Ensemblrn6Rnor6.0
Rnor_5.01169,914,664 - 69,969,813 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41165,708,818 - 65,763,303 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1163,378,195 - 63,432,314 (-)NCBICelera
RGSC_v3.11165,766,406 - 65,820,891 (-)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Polymorphic variation of RPGRIP1L and IQCB1 as modifiers of X-linked retinitis pigmentosa caused by mutations in RPGR. Fahim AT, etal., Adv Exp Med Biol. 2012;723:313-20. doi: 10.1007/978-1-4614-0631-0_41.
2. Allelic heterogeneity and genetic modifier loci contribute to clinical variation in males with X-linked retinitis pigmentosa due to RPGR mutations. Fahim AT, etal., PLoS One. 2011;6(8):e23021. doi: 10.1371/journal.pone.0023021. Epub 2011 Aug 12.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mutation analysis in nephronophthisis using a combined approach of homozygosity mapping, CEL I endonuclease cleavage, and direct sequencing. Otto EA, etal., Hum Mutat. 2008 Mar;29(3):418-26.
6. Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulin. Otto EA, etal., Nat Genet. 2005 Mar;37(3):282-8. Epub 2005 Feb 20.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Variations in NPHP5 in patients with nonsyndromic leber congenital amaurosis and Senior-Loken syndrome. Stone EM, etal., Arch Ophthalmol. 2011 Jan;129(1):81-7. doi: 10.1001/archophthalmol.2010.330.
11. Whole-exome sequencing identifies ALMS1, IQCB1, CNGA3, and MYO7A mutations in patients with Leber congenital amaurosis. Wang X, etal., Hum Mutat. 2011 Dec;32(12):1450-9. doi: 10.1002/humu.21587. Epub 2011 Sep 23.
Additional References at PubMed
PMID:18570454   PMID:21399614   PMID:21565611   PMID:23382074  


Genomics

Comparative Map Data
Iqcb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,410,986 - 77,465,540 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1177,410,314 - 77,465,478 (-)EnsemblGRCr8
mRatBN7.21163,905,595 - 63,960,141 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,905,590 - 63,960,093 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1172,718,005 - 72,772,493 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,380,229 - 65,434,717 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,414,526 - 64,469,006 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,824,059 - 66,878,585 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,824,065 - 66,878,551 (-)Ensemblrn6Rnor6.0
Rnor_5.01169,914,664 - 69,969,813 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41165,708,818 - 65,763,303 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1163,378,195 - 63,432,314 (-)NCBICelera
RGSC_v3.11165,766,406 - 65,820,891 (-)NCBI
Cytogenetic Map11q21NCBI
IQCB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383121,769,761 - 121,835,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3121,769,399 - 121,835,093 (-)Ensemblhg38GRCh38
GRCh373121,488,608 - 121,553,907 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363122,971,531 - 123,036,616 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343122,971,533 - 123,036,616NCBI
Celera3119,898,471 - 119,963,801 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3118,862,589 - 118,928,009 (-)NCBIHuRef
CHM1_13121,452,078 - 121,517,407 (-)NCBICHM1_1
T2T-CHM13v2.03124,489,717 - 124,555,054 (-)NCBIT2T-CHM13v2.0
Iqcb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,648,722 - 36,694,044 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,648,747 - 36,693,083 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381636,828,360 - 36,872,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,828,385 - 36,872,721 (+)Ensemblmm10GRCm38
MGSCv371636,828,486 - 36,872,805 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361636,747,647 - 36,791,952 (+)NCBIMGSCv36mm8
Celera1637,239,431 - 37,283,593 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.11NCBI
Iqcb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,118,703 - 21,171,683 (-)Ensembl
ChiLan1.0NW_00495542721,120,012 - 21,171,838 (-)NCBIChiLan1.0ChiLan1.0
IQCB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,726,633 - 119,791,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13119,731,421 - 119,796,212 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03118,871,589 - 118,936,591 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13125,779,453 - 125,844,242 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3125,779,453 - 125,844,242 (-)EnsemblpanPan2panpan1.1
IQCB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,046,975 - 25,113,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,047,172 - 25,112,652 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3325,073,613 - 25,137,949 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03325,282,284 - 25,348,614 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,282,286 - 25,348,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,081,152 - 25,146,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,123,230 - 25,188,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03325,680,892 - 25,746,638 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Iqcb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,308,278 - 129,357,886 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,163,554 - 8,213,708 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,164,120 - 8,213,690 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQCB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,681,740 - 138,741,367 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113138,689,544 - 138,741,228 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213148,308,753 - 148,368,283 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IQCB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12259,025,265 - 59,097,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2259,025,261 - 59,098,138 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041107,222,762 - 107,296,530 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iqcb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462491256,946 - 113,438 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462491256,209 - 112,766 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Iqcb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1421,694,613 - 21,741,633 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Iqcb1
377 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:96
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000066616
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat

Markers in Region
RH130971  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21163,905,688 - 63,905,870 (+)MAPPERmRatBN7.2
Rnor_6.01166,824,151 - 66,824,332NCBIRnor6.0
Rnor_5.01169,914,756 - 69,914,937UniSTSRnor5.0
RGSC_v3.41165,708,904 - 65,709,085UniSTSRGSC3.4
Celera1163,378,281 - 63,378,462UniSTS
RH 3.4 Map11485.4UniSTS
Cytogenetic Map11q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066616   ⟹   ENSRNOP00000061216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1177,411,938 - 77,465,478 (-)Ensembl
mRatBN7.2 Ensembl1163,905,603 - 63,960,093 (-)Ensembl
Rnor_6.0 Ensembl1166,824,065 - 66,878,551 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100750   ⟹   ENSRNOP00000078884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1177,410,314 - 77,465,478 (-)Ensembl
mRatBN7.2 Ensembl1163,905,590 - 63,960,093 (-)Ensembl
RefSeq Acc Id: NM_001107092   ⟹   NP_001100562
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,410,992 - 77,465,478 (-)NCBI
mRatBN7.21163,905,603 - 63,960,093 (-)NCBI
Rnor_6.01166,824,065 - 66,878,551 (-)NCBI
Rnor_5.01169,914,664 - 69,969,813 (-)NCBI
RGSC_v3.41165,708,818 - 65,763,303 (-)RGD
Celera1163,378,195 - 63,432,314 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248395   ⟹   XP_006248457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,410,986 - 77,465,540 (-)NCBI
mRatBN7.21163,905,595 - 63,960,141 (-)NCBI
Rnor_6.01166,824,059 - 66,878,566 (-)NCBI
Rnor_5.01169,914,664 - 69,969,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248396   ⟹   XP_006248458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,410,986 - 77,465,534 (-)NCBI
mRatBN7.21163,905,595 - 63,960,141 (-)NCBI
Rnor_6.01166,824,059 - 66,878,566 (-)NCBI
Rnor_5.01169,914,664 - 69,969,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248397   ⟹   XP_006248459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,410,986 - 77,465,531 (-)NCBI
mRatBN7.21163,905,595 - 63,960,131 (-)NCBI
Rnor_6.01166,824,059 - 66,878,585 (-)NCBI
Rnor_5.01169,914,664 - 69,969,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768730   ⟹   XP_008766952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,410,986 - 77,465,521 (-)NCBI
mRatBN7.21163,905,595 - 63,960,079 (-)NCBI
Rnor_6.01166,824,059 - 66,878,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088353   ⟹   XP_038944281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,432,471 - 77,465,535 (-)NCBI
mRatBN7.21163,927,086 - 63,960,141 (-)NCBI
RefSeq Acc Id: XM_063270524   ⟹   XP_063126594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,432,471 - 77,465,517 (-)NCBI
RefSeq Acc Id: XM_063270525   ⟹   XP_063126595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,432,471 - 77,465,534 (-)NCBI
RefSeq Acc Id: XM_063270526   ⟹   XP_063126596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,432,471 - 77,465,521 (-)NCBI
RefSeq Acc Id: XR_010055955
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,412,263 - 77,465,535 (-)NCBI
RefSeq Acc Id: NP_001100562   ⟸   NM_001107092
- UniProtKB: D4A6J0 (UniProtKB/TrEMBL),   A6IRA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248457   ⟸   XM_006248395
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248458   ⟸   XM_006248396
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248459   ⟸   XM_006248397
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008766952   ⟸   XM_008768730
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000061216   ⟸   ENSRNOT00000066616
RefSeq Acc Id: XP_038944281   ⟸   XM_039088353
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000078884   ⟸   ENSRNOT00000100750
RefSeq Acc Id: XP_063126595   ⟸   XM_063270525
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126596   ⟸   XM_063270526
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126594   ⟸   XM_063270524
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6J0-F1-model_v2 AlphaFold D4A6J0 1-557 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698180
Promoter ID:EPDNEW_R8704
Type:multiple initiation site
Name:Iqcb1_1
Description:IQ motif containing B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01166,878,558 - 66,878,618EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310069 AgrOrtholog
BioCyc Gene G2FUF-21242 BioCyc
Ensembl Genes ENSRNOG00000038868 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066616 ENTREZGENE
  ENSRNOT00000066616.3 UniProtKB/TrEMBL
  ENSRNOT00000100750 ENTREZGENE
  ENSRNOT00000100750.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
InterPro IQ_CaM-bd_region UniProtKB/TrEMBL
  IQCB1 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:303915 UniProtKB/TrEMBL
NCBI Gene 303915 ENTREZGENE
PANTHER IQ CALMODULIN-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15673 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PhenoGen Iqcb1 PhenoGen
PROSITE PS50096 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038868 RatGTEx
SMART SM00015 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZLP5 ENTREZGENE, UniProtKB/TrEMBL
  A6IRA5 ENTREZGENE, UniProtKB/TrEMBL
  A6IRA9 ENTREZGENE, UniProtKB/TrEMBL
  D4A6J0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Iqcb1  IQ motif containing B1  Iqcb1  IQ calmodulin-binding motif containing 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Iqcb1  IQ calmodulin-binding motif containing 1   Iqcb1_predicted  IQ calmodulin-binding motif containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Iqcb1_predicted  IQ calmodulin-binding motif containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED