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Gene: Spata6l (spermatogenesis associated 6-like) Rattus norvegicus

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Symbol:

Spata6l

Name:

spermatogenesis associated 6-like

RGD ID:

1310039

Description:

Predicted to enable myosin light chain binding activity. Predicted to be involved in spermatogenesis. Predicted to be located in sperm head-tail coupling apparatus. Orthologous to human SPATA6L (spermatogenesis associated 6 like); INTERACTS WITH bisphenol A; C60 fullerene; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC361747; LOC361747; RGD1310039; similar to hypothetical protein FLJ10058; spermatogenesis associated 6-like protein; uncharacterized protein C9orf68 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPATA6L (spermatogenesis associated 6 like)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Spata6l (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spata6l (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPATA6L (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPATA6L (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spata6l (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPATA6L (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPATA6L (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spata6l (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Spata6l (spermatogenesis associated 6 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RAB34 (RAB34, member RAS oncogene family)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SPATA6L (spermatogenesis associated 6 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPATA6L (spermatogenesis associated 6 like)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Spata6l (spermatogenesis associated 6 like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spata6l (spermatogenesis associated 6-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	spata6l (spermatogenesis associated 6-like)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14079	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14079	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	spata6l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	236,042,960 - 236,096,530 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	236,033,147 - 236,096,730 (-)	Ensembl				GRCr8
mRatBN7.2	1	226,630,470 - 226,682,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	226,641,518 - 226,682,884 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	235,044,984 - 235,086,340 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	241,974,647 - 242,016,004 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	234,799,801 - 234,841,372 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	247,037,004 - 247,088,124 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	247,046,650 - 247,088,012 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	254,286,409 - 254,327,826 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	232,561,074 - 232,602,405 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	223,794,385 - 223,835,716 (-)	NCBI		Celera
RGSC_v3.1	1	232,725,097 - 232,766,428 (-)	NCBI
Cytogenetic Map	1	q52	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dichloride (ISO)

methamphetamine (EXP)

methylarsonic acid (ISO)

nickel atom (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cholesterol homeostasis (IEA)

farnesyl diphosphate catabolic process (IEA)

geranyl diphosphate metabolic process (IEA)

geranylgeranyl diphosphate catabolic process (IEA)

isoprenoid metabolic process (IEA)

phospholipid dephosphorylation (IEA)

positive regulation of neutrophil activation (IEA)

spermatogenesis (IEA)

Cellular Component

endoplasmic reticulum membrane (IEA)

nuclear membrane (IEA)

sperm head-tail coupling apparatus (IEA)

Molecular Function

hydrolase activity (IEA)

isoprenoid diphosphate phosphatase activity (IEA)

lipid phosphatase activity (IEA)

lysophosphatidic acid phosphatase activity (IEA)

myosin light chain binding (IEA)

phosphatidate phosphatase activity (IEA)

sphingosine-1-phosphate phosphatase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Spata6l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	236,042,960 - 236,096,530 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	236,033,147 - 236,096,730 (-)	Ensembl				GRCr8
mRatBN7.2	1	226,630,470 - 226,682,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	226,641,518 - 226,682,884 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	235,044,984 - 235,086,340 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	241,974,647 - 242,016,004 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	234,799,801 - 234,841,372 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	247,037,004 - 247,088,124 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	247,046,650 - 247,088,012 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	254,286,409 - 254,327,826 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	232,561,074 - 232,602,405 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	223,794,385 - 223,835,716 (-)	NCBI		Celera
RGSC_v3.1	1	232,725,097 - 232,766,428 (-)	NCBI
Cytogenetic Map	1	q52	NCBI

SPATA6L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	4,588,821 - 4,666,480 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	4,553,386 - 4,666,674 (-)	Ensembl			hg38	GRCh38
GRCh37	9	4,588,821 - 4,666,480 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	4,588,316 - 4,656,464 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	4,578,826 - 4,656,423	NCBI
Celera	9	4,520,019 - 4,589,180 (-)	NCBI		Celera
Cytogenetic Map	9	p24.2-p24.1	NCBI
HuRef	9	4,553,435 - 4,622,008 (-)	NCBI		HuRef
CHM1_1	9	4,598,289 - 4,666,754 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	4,592,492 - 4,670,154 (-)	NCBI		T2T-CHM13v2.0

Spata6l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	28,899,836 - 28,945,289 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	28,878,668 - 28,945,200 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	28,917,638 - 28,967,832 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	28,893,042 - 28,967,800 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	28,997,554 - 29,038,644 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	28,989,061 - 29,030,151 (-)	NCBI		MGSCv36	mm8
Celera	19	29,698,280 - 29,739,392 (-)	NCBI		Celera
Cytogenetic Map	19	C1	NCBI
cM Map	19	23.57	NCBI

Spata6l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	8,893,964 - 8,956,844 (-)	Ensembl
ChiLan1.0	NW_004955434	8,893,132 - 8,956,994 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATA6L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	119,889,581 - 120,059,802 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	119,897,034 - 120,061,726 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	4,373,755 - 4,500,502 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	4,621,562 - 4,686,940 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	4,625,140 - 4,686,478 (-)	Ensembl			panPan2	panpan1.1

SPATA6L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	92,994,949 - 93,041,135 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	92,994,946 - 93,041,135 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	93,465,186 - 93,513,938 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	93,546,787 - 93,595,571 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	93,548,940 - 93,595,879 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	93,178,661 - 93,227,455 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	92,901,922 - 92,950,638 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	93,666,960 - 93,715,712 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spata6l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	140,572,457 - 140,617,779 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	555,106 - 603,136 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	555,168 - 600,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA6L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	217,300,959 - 217,352,573 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	217,287,961 - 217,353,093 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	243,186,476 - 243,214,855 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA6L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	74,874,307 - 74,936,574 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	74,877,129 - 74,932,890 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	63,204,525 - 63,267,832 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata6l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	9,337,024 - 9,416,684 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624736	9,340,041 - 9,416,725 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spata6l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	28,987,470 - 29,029,236 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spata6l
106 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	27
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000020464
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	243666627	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
634340	Hcar5	Hepatocarcinoma resistance QTL 5	8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	223964326	236074012	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
6480786	Bw97	Body weight QTL 97	5.03		body mass (VT:0001259)	body weight (CMO:0000012)	1	234540191	237018045	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

D1Rat302

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	236,073,851 - 236,074,012 (+)	Marker Load Pipeline
mRatBN7.2	1	226,660,307 - 226,660,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	247,065,439 - 247,065,599	NCBI	Rnor6.0
Rnor_5.0	1	254,305,181 - 254,305,341	UniSTS	Rnor5.0
RGSC_v3.4	1	232,579,832 - 232,579,992	UniSTS	RGSC3.4
RGSC_v3.4	1	232,579,831 - 232,579,992	RGD	RGSC3.4
Celera	1	223,813,143 - 223,813,303	UniSTS
RGSC_v3.1	1	232,743,855 - 232,744,015	RGD
RH 3.4 Map	1	1608.6	UniSTS
RH 3.4 Map	1	1608.6	RGD
SHRSP x BN Map	1	126.57	RGD
SHRSP x BN Map	1	126.57	UniSTS
Cytogenetic Map	1	q52	UniSTS

RH128654

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	226,681,606 - 226,681,799 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	247,086,735 - 247,086,927	NCBI	Rnor6.0
Rnor_5.0	1	254,326,477 - 254,326,669	UniSTS	Rnor5.0
RGSC_v3.4	1	232,601,128 - 232,601,320	UniSTS	RGSC3.4
Celera	1	223,834,439 - 223,834,631	UniSTS
RH 3.4 Map	1	1616.8	UniSTS
Cytogenetic Map	1	q52	UniSTS

RH137780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	1	1616.3	UniSTS
Cytogenetic Map	1	q52	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	164	81	80	49	78	49	6	331	177	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001835436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020464 ⟹ ENSRNOP00000020464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,055,099 - 236,096,426 (-)	Ensembl
mRatBN7.2 Ensembl	1	226,641,518 - 226,682,884 (-)	Ensembl
Rnor_6.0 Ensembl	1	247,046,650 - 247,088,012 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094772 ⟹ ENSRNOP00000090234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,055,063 - 236,096,426 (-)	Ensembl
mRatBN7.2 Ensembl	1	226,641,518 - 226,682,884 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113241 ⟹ ENSRNOP00000095820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	226,641,518 - 226,681,956 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147413 ⟹ ENSRNOP00000099663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,059,074 - 236,092,709 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152996 ⟹ ENSRNOP00000107129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,033,147 - 236,096,426 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161610 ⟹ ENSRNOP00000102083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,055,063 - 236,092,717 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173823 ⟹ ENSRNOP00000104812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,055,063 - 236,096,730 (-)	Ensembl

RefSeq Acc Id:

NM_001014165 ⟹ NP_001014187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,062 - 236,096,426 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,682,884 (-)	NCBI
Rnor_6.0	1	247,046,649 - 247,088,012 (-)	NCBI
Rnor_5.0	1	254,286,409 - 254,327,826 (-)	NCBI
RGSC_v3.4	1	232,561,074 - 232,602,405 (-)	RGD
Celera	1	223,794,385 - 223,835,716 (-)	RGD

Sequence:

show sequence

CGAAGGGGAGGGGGTGGGGGTCAGGGAAGCTTCTGGAAAAACACTTGCCTTGATGTAAACTAAG
AAATAATTGGTTCAAGGCTCAGCACAAAGGGATCTTTGCGGTGCACAGGGAAGGAAGGATGCCT
CTGGAGGTGGTGGTGGAGCTCCAAATCCGGGCGATTTCTTGCCCAGGAGTGTTCCTGCCGGACA
AGGAAGTTGTGTACCTTGGAGTCTACCTTCTGAATCAGTACCTGGAGACAGACTGCTTTCCCTC
TGTGTTCCCTATTGTGATTCAACAGAGCATGAGGTTTGAAAAGGTCTTTGAAGAGGCAATGGAT
CCTGGAGCTGTTGCAGAACTTTTAGAAAGCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGT
CTCCAGCATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGACTTCCTATTCCCTGAGCC
CAAGCTGACATCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACGGCTATTTGGTTT
CCCGGCATTGCTCCCAAACTAGAGTTTTCTACAAGGACAGCCATCCTAGAGTGTGTGTTCCCGT
GTAAAAACAGATTTCTTTGGGAAGAAAGGTGTAAATTGCAACAGTCTTTCTCAAAACTGAACGG
ACCGGCAAACAACAGGAAAAAGAAGCCAAAGGAGAAAAATTCTGACCAGCTCTCCAAAGGCACA
CCATTTTGGGGACCCTCCCCACAACGACTCCATCTCCACCGGCCCACACAGAGGAACCCTGGAA
AGAGCTTCCGGTTTCTGGGAGAAAGGAAGCCTCCATTTGTGGTTAGACATGTGGACAGTGGAAA
CCCCTTTGGTGAAAATAATTTGGAGCACCATTCACAGAAGTCCAGAAGAAAACCTAAGTTTATA
AACTTTGATCTTGCAAAGAAAAGAGCGTTTTCTCTTGACAGTCTCGAGGCAAACATAAAGGTTG
TCAGAGAGCCGGACGAGCGGATTGTCTTAAGGAGTCAGTCACCGCCACCTCTAAATTCAGGCCA
TTTCAGAAAGCCCTTGCTCAATCACCAAGGGGATGTCGATTTCCACCCGGAAACTACAGTTACC
ACCTCTCAGCTTTCCAGCCCTCCCAGCCCTCTGGATCACTCTCTTCTCCAAGAAAGGTTCCAGC
CTTGTTCTGCATCCATGTGGCAGAAGATCCAGGAGAGGGCATGCAGTCTTCTGACACCCAACAG
AGCTCACCCAAAGGAAGATTCTATCTCTGAAACAAATTCCATCCATGAAAGACCAAGCTACCTT
CTGAGGAAACACTTGCTGCGAGAGCACAGATATTTTTAACTACTACCTCATGGGAACATGACTG
AAGGATGCAGAGCTCGCTCATGGAGACACTGACACACGAACAGCATCTGCTGTTGTCTGGGTTG
ACTTACTGGTGCCTAGCCCTTGTTAATTCAAATCTTATACTCGGTCTTTTGTGCCCAAGGTAAG
AATTATTGATTAAATTCTGTCTGGGACTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231237 ⟹ XP_006231299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,092,578 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,679,036 (-)	NCBI
Rnor_6.0	1	247,045,668 - 247,084,153 (-)	NCBI
Rnor_5.0	1	254,286,409 - 254,327,826 (-)	NCBI

Sequence:

show sequence

ACACCTGGCGGAGACGTGGGAGGGAACCCGGAGAGCCAGCTTGAGAGAGGTGGGAGGATGGAGA
AGCTGGGAAGTGCAGGTGAAGGACACAGTGATGGCGTCATTTCAGAGCTATGGGAGATTTCTTG
CCCAGGAGTGTTCCTGCCGGACAAGGAAGTTGTGTACCTTGGAGTCTACCTTCTGAATCAGTAC
CTGGAGACAGACTGCTTTCCCTCTGTGTTCCCTATTGTGATTCAACAGAGCATGAGGTTTGAAA
AGGTCTTTGAAGAGGCAATGGATCCTGGAGCTGTTGCAGAACTTTTAGAAAGCTTCCTAACCAG
GTTTGAATTAGTACAGCTAGTGTCTCCAGCATGGGAAGAGTTGGCCTACTATGAAAAAAACACC
CGAGACTTCCTATTCCCTGAGCCCAAGCTGACATCCTCACACCTTGGCATGCAGAGGGAGGTGC
TCATGAAGACGGCTATTTGGTTTCCCGGCATTGCTCCCAAACTAGAGTTTTCTACAAGGACAGC
CATCCTAGAGTGTGTGTTCCCGTGTAAAAACAGATTTCTTTGGGAAGAAAGGTGTAAATTGCAA
CAGTCTTTCTCAAAACTGAACGGACCGGCAAACAACAGGAAAAAGAAGCCAAAGGAGAAAAATT
CTGACCAGCTCTCCAAAGGCACACCATTTTGGGGACCCTCCCCACAACGACTCCATCTCCACCG
GCCCACACAGAGGAACCCTGGAAAGAGCTTCCGGTTTCTGGGAGAAAGGAAGCCTCCATTTGTG
GTTAGACATGTGGACAGTGGAAACCCCTTTGGTGAAAATAATTTGGAGCACCATTCACAGAAGT
CCAGAAGAAAACCTAAGTTTATAAACTTTGATCTTGCAAAGAAAAGAGCGTTTTCTCTTGACAG
TCTCGAGGCAAACATAAAGGTTGTCAGAGAGCCGGACGAGCGGATTGTCTTAAGGAGTCAGTCA
CCGCCACCTCTAAATTCAGGCCATTTCAGAAAGCCCTTGCTCAATCACCAAGGGGATGTCGATT
TCCACCCGGAAACTACAGTTACCACCTCTCAGCTTTCCAGCCCTCCCAGCCCTCTGGATCACTC
TCTTCTCCAAGAAAGGTTCCAGCCTTGTTCTGCATCCATGTGGCAGAAGATCCAGGAGAGGGCA
TGCAGTCTTCTGACACCCAACAGAGCTCACCCAAAGGAAGATTCTATCTCTGAAACAAATTCCA
TCCATGAAAGACCAAGCTACCTTCTGAGGAAACACTTGCTGCGAGAGCACAGATATTTTTAACT
ACTACCTCATGGGAACATGACTGAAGGATGCAGAGCTCGCTCATGGAGACACTGACACACGAAC
AGCATCTGCTGTTGTCTGGGTTGACTTACTGGTGCCTAGCCCTTGTTAATTCAAATCTTATACT
CGGTCTTTTGTGCCCAAGGTAAGAATTATTGATTAAATTCTGTCTGGGACTCTCATTCACTTGT
CGCCTGGAGAATTTGTGTCTTCCACTGTGTTTATTTTGAGCATGAAAAGTAGAAAACATAATAG
AAGTCTACCAGAGGCTTTTCCATTTGCAAATCATTTTTAAAAATTGTAACAAACACATTAAAAA
TAAAAAATATTGTAACAAATATGTCTTCCGTGAGGCAGGGAGTTGATTATTTTGGGAGATAACC
TGATAAGTCAACTGGGAAAAGACCATCAGCTTGGCTTTCTCTTTTTGATAAATCTGAGTTTGTG
TTTCATTTTCTCGTGTTAAGCTCGAATAGCATCAAGTCCTTTATTAGAGCCCAAGAAAAAGAGT
ATTAACATCTCAAGAGTTCAGATCTCATTTTATCATTGAATTTTCTGAGATGAATTTGCAGGAG
GGATTAATTTCTGCAGTTTAAATCATTCCCTCTCCCTGTCTCCCCTTGATAAATTCTTAATAAA
TATAGATCAGAAACAAAATCTTCTTGCAAGCATTTTTTTTTCTAAGAGAACTGCCTTTAAGTAA
ATAGATTCCACAGAGAGTGCCACCCAGGCAGGCTGCAGGAGCTTTAGGAAATGCTTAGGCAATC
TGAGGGAGCAAGAAGAGGAAGGAAGGAGCTGGGAGGGGCTGTGGGCGTGTTGTCTTCCTTCCAT
CCCATCATGATTTTTGCCTCCTCCTCTGCCTCGTTTGCTGCAGTTTGAATGTTTGTGTCCCCTT
GAATTCCTAACTTGAAAGGCGATAGCATTAGATGGAGCTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGATAGAGCCCTATGGACAAAACTGTAAAAA
AGGTCCTGGGAGCTTGGTCCTTCCTAACACACATGAGGGTACACTCAGTGAGGGGAACCAAGCA
GAGGCCTTTAACAGATTACAAATTTGCCATCACCTTAACTTTGGACTCTCCTGTGAGAGACAAA
TTTCTTTTCTTC

hide sequence

RefSeq Acc Id:

XM_008760342 ⟹ XP_008758564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,682,972 (-)	NCBI
Rnor_6.0	1	247,045,860 - 247,088,120 (-)	NCBI

Sequence:

show sequence

TCCATGGCAACCAGACGCATCCGCCTTCTGAAAGCTTACACTCCAAAGCTTGTTGCTCAGCACA
AAGGGATCTTTGCGGTGCACAGGGAAGGAAGGATGCCTCTGGAGGTGGTGGTGGAGCTCCAAAT
CCGGGCGATTTCTTGCCCAGGAGTGTTCCTGCCGGACAAGGAAGTTGTGTACCTTGGAGTCTAC
CTTCTGAATCAGTACCTGGAGACAGACTGCTTTCCCTCTGTGTTCCCTATTGTGATTCAACAGA
GCATGAGGTTTGAAAAGGTCTTTGAAGAGGCAATGGATCCTGGAGCTGTTGCAGAACTTTTAGA
AAGCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAGCATGGGAAGAGTTGGCCTAC
TATGAAAAAAACACCCGAGACTTCCTATTCCCTGAGCCCAAGCTGACATCCTCACACCTTGGCA
TGCAGAGGGAGGTGCTCATGAAGACGGCTATTTGGTTTCCCGGCATTGCTCCCAAACTAGAGTT
TTCTACAAGGACAGCCATCCTAGAGTGTGTGTTCCCGTGTAAAAACAGATTTCTTTGGGAAGAA
AGGTGTAAATTGCAACAGTCTTTCTCAAAACTGAACGGACCGGCAAACAACAGGAAAAAGAAGC
CAAAGGAGAAAAATTCTGACCAGCTCTCCAAAGGCACACCATTTTGGGGACCCTCCCCACAACG
ACTCCATCTCCACCGGCCCACACAGAGGAACCCTGGAAAGAGCTTCCGGTTTCTGGGAGAAAGG
AAGCCTCCATTTGTGGTTAGACATGTGGACAGTGGAAACCCCTTTGGTGAAAATAATTTGGAGC
ACCATTCACAGAAGTCCAGAAGAAAACCTAAGTTTATAAACTTTGATCTTGCAAAGAAAAGAGC
GTTTTCTCTTGACAGTCTCGAGGCAAACATAAAGGTTGTCAGAGAGCCGGACGAGCGGATTGTC
TTAAGGAGTCAGTCACCGCCACCTCTAAATTCAGGCCATTTCAGAAAGCCCTTGCTCAATCACC
AAGGGGATGTCGATTTCCACCCGGAAACTACAGTTACCACCTCTCAGCTTTCCAGCCCTCCCAG
CCCTCTGGATCACTCTCTTCTCCAAGAAAGGTTCCAGCCTTGTTCTGCATCCATGTGGCAGAAG
ATCCAGGAGAGGGCATGCAGTCTTCTGACACCCAACAGAGCTCACCCAAAGGAAGATTCTATCT
CTGAAACAAATTCCATCCATGAAAGACCAAGCTACCTTCTGAGGAAACACTTGCTGCGAGAGCA
CAGATATTTTTAACTACTACCTCATGGGAACATGACTGAAGGATGCAGAGCTCGCTCATGGAGA
CACTGACACACGAACAGCATCTGCTGTTGTCTGGGTTGACTTACTGGTGCCTAGCCCTTGTTAA
TTCAAATCTTATACTCGGTCTTTTGTGCCCAAGGTAAGAATTATTGATTAAATTCTGTCTGGGA
CTCTCATTCACTTGTCGCCTGGAGAATTTGTGTCTTCCACTGTGTTTATTTTGAGCATGAAAAG
TAGAAAACATAATAGAAGTCTACCAGAGGCTTTTCCATTTGCAAATCATTTTTAAAAATTGTAA
CAAACACATTAAAAATAAAAAATATTGTAACAAATATGTCTTCCGTGAGGCAGGGAGTTGATTA
TTTTGGGAGATAACCTGATAAGTCAACTGGGAAAAGACCATCAGCTTGGCTTTCTCTTTTTGAT
AAATCTGAGTTTGTGTTTCATTTTCTCGTGTTAAGCTCGAATAGCATCAAGTCCTTTATTAGAG
CCCAAGAAAAAGAGTATTAACATCTCAAGAGTTCAGATCTCATTTTATCATTGAATTTTCTGAG
ATGAATTTGCAGGAGGGATTAATTTCTGCAGTTTAAATCATTCCCTCTCCCTGTCTCCCCTTGA
TAAATTCTTAATAAATATAGATCAGAAACAAAATCTTCTTGCAAGCATTTTTTTTTCTAAGAGA
ACTGCCTTTAAGTAAATAGATTCCACAGAGAGTGCCACCCAGGCAGGCTGCAGGAGCTTTAGGA
AATGCTTAGGCAATCTGAGGGAGCAAGAAGAGGAAGGAAGGAGCTGGGAGGGGCTGTGGGCGTG
TTGTCTTCCTTCCATCCCATCATGATTTTTGCCTCCTCCTCTGCCTCGTTTGCTGCAGTTTGAA
TGTTTGTGTCCCCTTGAATTCCTAACTTGAAAGGCGATAGCATTAGATGGAGCTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGT

hide sequence

RefSeq Acc Id:

XM_039084395 ⟹ XP_038940323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,682,976 (-)	NCBI

RefSeq Acc Id:

XM_039084401 ⟹ XP_038940329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,682,979 (-)	NCBI

RefSeq Acc Id:

XM_039084414 ⟹ XP_038940342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,092,581 (-)	NCBI
mRatBN7.2	1	226,641,517 - 226,679,036 (-)	NCBI

RefSeq Acc Id:

XM_063268600 ⟹ XP_063124670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI

RefSeq Acc Id:

XM_063268606 ⟹ XP_063124676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI

RefSeq Acc Id:

XR_005489004

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,042,960 - 236,096,530 (-)	NCBI
mRatBN7.2	1	226,630,470 - 226,682,976 (-)	NCBI

RefSeq Acc Id:

XR_010055142

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,042,960 - 236,096,505 (-)	NCBI

RefSeq Acc Id:

XR_010055143

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,530 (-)	NCBI

RefSeq Acc Id:

XR_010055144

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,055,055 - 236,096,517 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014187	(Get FASTA)	NCBI Sequence Viewer
	XP_006231299	(Get FASTA)	NCBI Sequence Viewer
	XP_008758564	(Get FASTA)	NCBI Sequence Viewer
	XP_038940323	(Get FASTA)	NCBI Sequence Viewer
	XP_038940329	(Get FASTA)	NCBI Sequence Viewer
	XP_038940342	(Get FASTA)	NCBI Sequence Viewer
	XP_063124670	(Get FASTA)	NCBI Sequence Viewer
	XP_063124676	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79024	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020464
	ENSRNOP00000090234
	ENSRNOP00000102083
	ENSRNOP00000104812
GenBank Protein	Q6AYJ3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014187 ⟸ NM_001014165

- UniProtKB:

Q6AYJ3 (UniProtKB/Swiss-Prot), A0A8L2QBD4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLEVVVELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMRFEKVFEEA
MDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQREVLMKTAI
WFPGIAPKLEFSTRTAILECVFPCKNRFLWEERCKLQQSFSKLNGPANNRKKKPKEKNSDQLSK
GTPFWGPSPQRLHLHRPTQRNPGKSFRFLGERKPPFVVRHVDSGNPFGENNLEHHSQKSRRKPK
FINFDLAKKRAFSLDSLEANIKVVREPDERIVLRSQSPPPLNSGHFRKPLLNHQGDVDFHPETT
VTTSQLSSPPSPLDHSLLQERFQPCSASMWQKIQERACSLLTPNRAHPKEDSISETNSIHERPS
YLLRKHLLREHRYF

hide sequence

RefSeq Acc Id:	XP_006231299 ⟸ XM_006231237
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AS81 (UniProtKB/TrEMBL), A0A8L2QBD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKLGSAGEGHSDGVISELWEISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMR FEKVFEEAMDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQR EVLMKTAIWFPGIAPKLEFSTRTAILECVFPCKNRFLWEERCKLQQSFSKLNGPANNRKKKPKE KNSDQLSKGTPFWGPSPQRLHLHRPTQRNPGKSFRFLGERKPPFVVRHVDSGNPFGENNLEHHS QKSRRKPKFINFDLAKKRAFSLDSLEANIKVVREPDERIVLRSQSPPPLNSGHFRKPLLNHQGD VDFHPETTVTTSQLSSPPSPLDHSLLQERFQPCSASMWQKIQERACSLLTPNRAHPKEDSISET NSIHERPSYLLRKHLLREHRYF hide sequence

RefSeq Acc Id:	XP_008758564 ⟸ XM_008760342
- Peptide Label:	isoform X3
- UniProtKB:	Q6AYJ3 (UniProtKB/Swiss-Prot), A0A8L2QBD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATRRIRLLKAYTPKLVAQHKGIFAVHREGRMPLEVVVELQIRAISCPGVFLPDKEVVYLGVYL LNQYLETDCFPSVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQLVSPAWEELAYY EKNTRDFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAILECVFPCKNRFLWEER CKLQQSFSKLNGPANNRKKKPKEKNSDQLSKGTPFWGPSPQRLHLHRPTQRNPGKSFRFLGERK PPFVVRHVDSGNPFGENNLEHHSQKSRRKPKFINFDLAKKRAFSLDSLEANIKVVREPDERIVL RSQSPPPLNSGHFRKPLLNHQGDVDFHPETTVTTSQLSSPPSPLDHSLLQERFQPCSASMWQKI QERACSLLTPNRAHPKEDSISETNSIHERPSYLLRKHLLREHRYF hide sequence

Ensembl Acc Id:

ENSRNOP00000020464 ⟸ ENSRNOT00000020464

RefSeq Acc Id:	XP_038940329 ⟸ XM_039084401
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038940323 ⟸ XM_039084395
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AE03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940342 ⟸ XM_039084414
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000090234 ⟸ ENSRNOT00000094772

Ensembl Acc Id:

ENSRNOP00000095820 ⟸ ENSRNOT00000113241

RefSeq Acc Id:	XP_063124670 ⟸ XM_063268600
- Peptide Label:	isoform X4
- UniProtKB:	A0A8L2QBD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124676 ⟸ XM_063268606
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000104812 ⟸ ENSRNOT00000173823

Ensembl Acc Id:

ENSRNOP00000102083 ⟸ ENSRNOT00000161610

Ensembl Acc Id:

ENSRNOP00000099663 ⟸ ENSRNOT00000147413

Ensembl Acc Id:

ENSRNOP00000107129 ⟸ ENSRNOT00000152996

Protein Domains

Spermatogenesis-associated protein 6 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYJ3-F1-model_v2	AlphaFold	Q6AYJ3	1-398	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690841

Promoter ID:

EPDNEW_R1365

Type:

initiation region

Name:

Spata6l_1

Description:

spermatogenesis associated 6-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	247,088,083 - 247,088,143	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310039	AgrOrtholog
BioCyc Gene	G2FUF-55987	BioCyc
Ensembl Genes	ENSRNOG00000015137	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000020464	ENTREZGENE
	ENSRNOT00000094772	ENTREZGENE
	ENSRNOT00000161610	ENTREZGENE
	ENSRNOT00000173823	ENTREZGENE
IMAGE_CLONE	IMAGE:7113918	IMAGE-MGC_LOAD
InterPro	SPATA6_fam	UniProtKB/Swiss-Prot
	SPATA6_N	UniProtKB/Swiss-Prot
KEGG Report	rno:361747	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93949	IMAGE-MGC_LOAD
NCBI Gene	361747	ENTREZGENE
PANTHER	PTHR16435	UniProtKB/Swiss-Prot
	PTHR16435:SF5	UniProtKB/Swiss-Prot
Pfam	SPATA6	UniProtKB/Swiss-Prot
PhenoGen	Spata6l	PhenoGen
RatGTEx	ENSRNOG00000015137	RatGTEx
UniProt	A0A8I6AE03	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QBD4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LAM6_RAT	UniProtKB/TrEMBL
	A0ABK0LEV4_RAT	UniProtKB/TrEMBL
	A0ABK0LPX0_RAT	UniProtKB/TrEMBL
	A0ABK0LS57_RAT	UniProtKB/TrEMBL
	Q6AYJ3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-22	Spata6l	spermatogenesis associated 6-like	RGD1310039	similar to hypothetical protein FLJ10058	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310039	similar to hypothetical protein FLJ10058	RGD1310039_predicted	similar to hypothetical protein FLJ10058 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310039_predicted	similar to hypothetical protein FLJ10058 (predicted)	LOC361747_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361747_predicted	similar to hypothetical protein FLJ10058 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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