Spata6l (spermatogenesis associated 6-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Spata6l (spermatogenesis associated 6-like) Rattus norvegicus
Analyze
Symbol: Spata6l
Name: spermatogenesis associated 6-like
RGD ID: 1310039
Description: Predicted to enable myosin light chain binding activity. Predicted to be involved in spermatogenesis. Predicted to be located in sperm connecting piece. Orthologous to human SPATA6L (spermatogenesis associated 6 like); INTERACTS WITH bisphenol A; C60 fullerene; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC361747; LOC361747; RGD1310039; similar to hypothetical protein FLJ10058; spermatogenesis associated 6-like protein; uncharacterized protein C9orf68 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,042,960 - 236,096,530 (-)NCBIGRCr8
mRatBN7.21226,630,470 - 226,682,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,641,518 - 226,682,884 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,044,984 - 235,086,340 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01241,974,647 - 242,016,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01234,799,801 - 234,841,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,037,004 - 247,088,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,046,650 - 247,088,012 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,286,409 - 254,327,826 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,561,074 - 232,602,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,725,097 - 232,766,428 (-)NCBI
Celera1223,794,385 - 223,835,716 (-)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Spata6l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,042,960 - 236,096,530 (-)NCBIGRCr8
mRatBN7.21226,630,470 - 226,682,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,641,518 - 226,682,884 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,044,984 - 235,086,340 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01241,974,647 - 242,016,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01234,799,801 - 234,841,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,037,004 - 247,088,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,046,650 - 247,088,012 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,286,409 - 254,327,826 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,561,074 - 232,602,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,725,097 - 232,766,428 (-)NCBI
Celera1223,794,385 - 223,835,716 (-)NCBICelera
Cytogenetic Map1q52NCBI
SPATA6L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3894,588,821 - 4,666,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl94,553,386 - 4,666,674 (-)EnsemblGRCh38hg38GRCh38
GRCh3794,588,821 - 4,666,480 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3694,588,316 - 4,656,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 3494,578,826 - 4,656,423NCBI
Celera94,520,019 - 4,589,180 (-)NCBICelera
Cytogenetic Map9p24.2-p24.1NCBI
HuRef94,553,435 - 4,622,008 (-)NCBIHuRef
CHM1_194,598,289 - 4,666,754 (-)NCBICHM1_1
T2T-CHM13v2.094,592,492 - 4,670,154 (-)NCBIT2T-CHM13v2.0
Spata6l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391928,899,836 - 28,945,289 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1928,878,668 - 28,945,200 (-)EnsemblGRCm39 Ensembl
GRCm381928,917,638 - 28,967,832 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1928,893,042 - 28,967,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv371928,997,554 - 29,038,644 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361928,989,061 - 29,030,151 (-)NCBIMGSCv36mm8
Celera1929,698,280 - 29,739,392 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1923.57NCBI
Spata6l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554348,893,964 - 8,956,844 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554348,893,132 - 8,956,994 (-)NCBIChiLan1.0ChiLan1.0
SPATA6L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211119,889,581 - 120,059,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19119,897,034 - 120,061,726 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v094,373,755 - 4,500,502 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.194,621,562 - 4,686,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl94,625,140 - 4,686,478 (-)Ensemblpanpan1.1panPan2
SPATA6L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,994,949 - 93,041,135 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,994,946 - 93,041,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha193,465,186 - 93,513,938 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0193,546,787 - 93,595,571 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl193,548,940 - 93,595,879 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1193,178,661 - 93,227,455 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,901,922 - 92,950,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,666,960 - 93,715,712 (-)NCBIUU_Cfam_GSD_1.0
Spata6l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947140,572,457 - 140,617,779 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936503555,106 - 603,136 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936503555,168 - 600,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA6L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,300,959 - 217,352,573 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,287,961 - 217,353,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,186,476 - 243,214,855 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA6L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11274,874,307 - 74,936,574 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1274,877,129 - 74,932,890 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603863,204,525 - 63,267,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata6l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247369,337,024 - 9,416,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247369,340,041 - 9,416,725 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata6l
352 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:27
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000020464
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1214537555226660468Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
6480786Bw97Body weight QTL 975.03body mass (VT:0001259)body weight (CMO:0000012)1225126575227604520Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat

Markers in Region
D1Rat302  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,660,307 - 226,660,468 (+)MAPPERmRatBN7.2
Rnor_6.01247,065,439 - 247,065,599NCBIRnor6.0
Rnor_5.01254,305,181 - 254,305,341UniSTSRnor5.0
RGSC_v3.41232,579,831 - 232,579,992RGDRGSC3.4
RGSC_v3.41232,579,832 - 232,579,992UniSTSRGSC3.4
RGSC_v3.11232,743,855 - 232,744,015RGD
Celera1223,813,143 - 223,813,303UniSTS
RH 3.4 Map11608.6UniSTS
RH 3.4 Map11608.6RGD
SHRSP x BN Map1126.57UniSTS
SHRSP x BN Map1126.57RGD
Cytogenetic Map1q52UniSTS
RH128654  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,681,606 - 226,681,799 (+)MAPPERmRatBN7.2
Rnor_6.01247,086,735 - 247,086,927NCBIRnor6.0
Rnor_5.01254,326,477 - 254,326,669UniSTSRnor5.0
RGSC_v3.41232,601,128 - 232,601,320UniSTSRGSC3.4
Celera1223,834,439 - 223,834,631UniSTS
RH 3.4 Map11616.8UniSTS
Cytogenetic Map1q52UniSTS
RH137780  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map11616.3UniSTS
Cytogenetic Map1q52UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 41 17 1 19 1 8 8 68 33 30 11 8
Below cutoff 2 32 32 32 3 6 2 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020464   ⟹   ENSRNOP00000020464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,641,518 - 226,682,884 (-)Ensembl
Rnor_6.0 Ensembl1247,046,650 - 247,088,012 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094772   ⟹   ENSRNOP00000090234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,641,518 - 226,682,884 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113241   ⟹   ENSRNOP00000095820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,641,518 - 226,681,956 (-)Ensembl
RefSeq Acc Id: NM_001014165   ⟹   NP_001014187
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,062 - 236,096,426 (-)NCBI
mRatBN7.21226,641,517 - 226,682,884 (-)NCBI
Rnor_6.01247,046,649 - 247,088,012 (-)NCBI
Rnor_5.01254,286,409 - 254,327,826 (-)NCBI
RGSC_v3.41232,561,074 - 232,602,405 (-)RGD
Celera1223,794,385 - 223,835,716 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231237   ⟹   XP_006231299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,092,578 (-)NCBI
mRatBN7.21226,641,517 - 226,679,036 (-)NCBI
Rnor_6.01247,045,668 - 247,084,153 (-)NCBI
Rnor_5.01254,286,409 - 254,327,826 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760342   ⟹   XP_008758564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
mRatBN7.21226,641,517 - 226,682,972 (-)NCBI
Rnor_6.01247,045,860 - 247,088,120 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084395   ⟹   XP_038940323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
mRatBN7.21226,641,517 - 226,682,976 (-)NCBI
RefSeq Acc Id: XM_039084401   ⟹   XP_038940329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
mRatBN7.21226,641,517 - 226,682,979 (-)NCBI
RefSeq Acc Id: XM_039084414   ⟹   XP_038940342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,092,581 (-)NCBI
mRatBN7.21226,641,517 - 226,679,036 (-)NCBI
RefSeq Acc Id: XM_063268600   ⟹   XP_063124670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
RefSeq Acc Id: XM_063268606   ⟹   XP_063124676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
RefSeq Acc Id: XR_005489004
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,042,960 - 236,096,530 (-)NCBI
mRatBN7.21226,630,470 - 226,682,976 (-)NCBI
RefSeq Acc Id: XR_010055142
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,042,960 - 236,096,505 (-)NCBI
RefSeq Acc Id: XR_010055143
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,530 (-)NCBI
RefSeq Acc Id: XR_010055144
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,055,055 - 236,096,517 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001014187   ⟸   NM_001014165
- UniProtKB: Q6AYJ3 (UniProtKB/Swiss-Prot),   A0A8L2QBD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231299   ⟸   XM_006231237
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS81 (UniProtKB/TrEMBL),   A0A8L2QBD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758564   ⟸   XM_008760342
- Peptide Label: isoform X3
- UniProtKB: Q6AYJ3 (UniProtKB/Swiss-Prot),   A0A8L2QBD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020464   ⟸   ENSRNOT00000020464
RefSeq Acc Id: XP_038940329   ⟸   XM_039084401
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038940323   ⟸   XM_039084395
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AE03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940342   ⟸   XM_039084414
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000090234   ⟸   ENSRNOT00000094772
RefSeq Acc Id: ENSRNOP00000095820   ⟸   ENSRNOT00000113241
RefSeq Acc Id: XP_063124670   ⟸   XM_063268600
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063124676   ⟸   XM_063268606
- Peptide Label: isoform X6
Protein Domains
Spermatogenesis-associated protein 6 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYJ3-F1-model_v2 AlphaFold Q6AYJ3 1-398 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690841
Promoter ID:EPDNEW_R1365
Type:initiation region
Name:Spata6l_1
Description:spermatogenesis associated 6-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01247,088,083 - 247,088,143EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310039 AgrOrtholog
BioCyc Gene G2FUF-55987 BioCyc
Ensembl Genes ENSRNOG00000015137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020464 ENTREZGENE
  ENSRNOT00000020464.5 UniProtKB/TrEMBL
  ENSRNOT00000094772.1 UniProtKB/TrEMBL
  ENSRNOT00000113241.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113918 IMAGE-MGC_LOAD
InterPro SPATA6_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPATA6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361747 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93949 IMAGE-MGC_LOAD
NCBI Gene 361747 ENTREZGENE
PANTHER PTHR16435 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16435:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SPATA6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spata6l PhenoGen
RatGTEx ENSRNOG00000015137 RatGTEx
UniProt A0A8I6AE03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QBD4 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYJ3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Spata6l  spermatogenesis associated 6-like  RGD1310039  similar to hypothetical protein FLJ10058  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310039  similar to hypothetical protein FLJ10058  RGD1310039_predicted  similar to hypothetical protein FLJ10058 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310039_predicted  similar to hypothetical protein FLJ10058 (predicted)  LOC361747_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361747_predicted  similar to hypothetical protein FLJ10058 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL