Ahdc1 (AT hook, DNA binding motif, containing 1) - Rat Genome Database

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Gene: Ahdc1 (AT hook, DNA binding motif, containing 1) Rattus norvegicus
Analyze
Symbol: Ahdc1
Name: AT hook, DNA binding motif, containing 1
RGD ID: 1310031
Description: Predicted to enable DNA-binding transcription factor activity and promoter-enhancer loop anchoring activity. Predicted to be involved in mesoderm formation and skin morphogenesis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Xia-Gibbs Syndrome. Orthologous to human AHDC1 (AT-hook DNA binding motif containing 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A.T hook DNA-binding motif-containing protein 1; AT-hook DNA-binding motif-containing protein 1; LOC362617; RGD1310031; similar to hypothetical protein MGC29331; transcription factor Gibbin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,512,182 - 150,578,804 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5150,512,037 - 150,583,144 (+)EnsemblGRCr8
mRatBN7.25145,228,228 - 145,294,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5147,928,942 - 147,994,279 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,698,538 - 149,763,881 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,686,904 - 149,752,122 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,209,894 - 151,277,192 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)Ensemblrn6Rnor6.0
Rnor_5.05154,878,231 - 154,944,337 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45152,034,725 - 152,101,966 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5143,693,243 - 143,715,931 (+)NCBICelera
RGSC_v3.15152,045,178 - 152,060,307 (-)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090  


Genomics

Comparative Map Data
Ahdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,512,182 - 150,578,804 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5150,512,037 - 150,583,144 (+)EnsemblGRCr8
mRatBN7.25145,228,228 - 145,294,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5147,928,942 - 147,994,279 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,698,538 - 149,763,881 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,686,904 - 149,752,122 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,209,894 - 151,277,192 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)Ensemblrn6Rnor6.0
Rnor_5.05154,878,231 - 154,944,337 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45152,034,725 - 152,101,966 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5143,693,243 - 143,715,931 (+)NCBICelera
RGSC_v3.15152,045,178 - 152,060,307 (-)NCBI
Cytogenetic Map5q36NCBI
AHDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,534,245 - 27,604,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,534,035 - 27,604,431 (-)Ensemblhg38GRCh38
GRCh37127,860,756 - 27,930,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,343 - 27,802,730 (-)NCBIBuild 36Build 36hg18NCBI36
Celera126,256,416 - 26,325,804 (-)NCBICelera
Cytogenetic Map1p36.11-p35.3NCBI
HuRef126,116,832 - 26,186,603 (-)NCBIHuRef
CHM1_1127,976,151 - 28,045,538 (-)NCBICHM1_1
T2T-CHM13v2.0127,375,551 - 27,445,533 (-)NCBIT2T-CHM13v2.0
Ahdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,738,797 - 132,805,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,738,571 - 132,805,421 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384133,011,265 - 133,078,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,011,260 - 133,078,110 (+)Ensemblmm10GRCm38
MGSCv374132,567,421 - 132,634,025 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364132,283,582 - 132,349,318 (+)NCBIMGSCv36mm8
Celera4131,174,218 - 131,241,080 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.18NCBI
Ahdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)Ensembl
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBIChiLan1.0ChiLan1.0
AHDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,249,065 - 199,318,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,365,500 - 198,435,147 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,794,800 - 26,864,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,840,765 - 27,910,728 (-)NCBIPanPan1.1PanPan1.1panPan2
AHDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,711,626 - 72,762,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,747,701 - 72,752,605 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha269,303,131 - 69,340,344 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0273,287,205 - 73,324,243 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1270,113,571 - 70,150,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,124,865 - 71,162,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,132,417 - 72,158,579 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ahdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,999,853 - 46,052,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,824,697 - 11,876,817 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,824,692 - 11,846,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,735,253 - 84,802,456 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1684,735,253 - 84,774,554 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,330,133 - 78,339,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AHDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,187,943 - 105,257,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,416,674 - 11,482,601 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476411,416,674 - 11,482,622 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ahdc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1125,159,000 - 25,223,927 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ahdc1
337 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:153
Interacting mature miRNAs:169
Transcripts:ENSRNOT00000067939
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
BE120316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25145,257,969 - 145,258,152 (+)MAPPERmRatBN7.2
Rnor_6.05151,241,004 - 151,241,186NCBIRnor6.0
Rnor_5.05154,908,149 - 154,908,331UniSTSRnor5.0
RGSC_v3.45152,070,757 - 152,070,939UniSTSRGSC3.4
Celera5143,679,742 - 143,679,924UniSTS
RH 3.4 Map5987.5UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 166 91 90 59 92 59 6 362 192 11 145 87 92 31 21 21

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067939   ⟹   ENSRNOP00000059351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,164 - 150,580,406 (+)Ensembl
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)Ensembl
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096702   ⟹   ENSRNOP00000091641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,539,968 - 150,581,424 (+)Ensembl
mRatBN7.2 Ensembl5145,256,165 - 145,284,214 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097308   ⟹   ENSRNOP00000084516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,037 - 150,583,144 (+)Ensembl
mRatBN7.2 Ensembl5145,256,165 - 145,294,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100034   ⟹   ENSRNOP00000096957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,216 - 150,578,069 (+)Ensembl
mRatBN7.2 Ensembl5145,228,259 - 145,294,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111674   ⟹   ENSRNOP00000092875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,526,612 - 150,578,604 (+)Ensembl
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000123873   ⟹   ENSRNOP00000100587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,538,159 - 150,578,588 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127652   ⟹   ENSRNOP00000103567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,037 - 150,583,144 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000143813   ⟹   ENSRNOP00000111693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,177 - 150,580,921 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157643   ⟹   ENSRNOP00000109214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,512,230 - 150,581,396 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161039   ⟹   ENSRNOP00000102855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5150,557,378 - 150,580,921 (+)Ensembl
RefSeq Acc Id: NM_001134956   ⟹   NP_001128428
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,878 - 150,578,094 (+)NCBI
mRatBN7.25145,228,925 - 145,294,170 (+)NCBI
Rnor_6.05151,211,342 - 151,277,189 (+)NCBI
Rnor_5.05154,878,231 - 154,944,337 (+)NCBI
RGSC_v3.45152,034,725 - 152,101,966 (-)RGD
Celera5143,693,243 - 143,715,931 (+)RGD
Sequence:
RefSeq Acc Id: XM_008764151   ⟹   XP_008762373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,501 - 150,578,804 (+)NCBI
mRatBN7.25145,228,388 - 145,294,050 (+)NCBI
Rnor_6.05151,210,927 - 151,277,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764152   ⟹   XP_008762374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,501 - 150,578,804 (+)NCBI
mRatBN7.25145,228,388 - 145,294,050 (+)NCBI
Rnor_6.05151,210,927 - 151,277,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593517   ⟹   XP_017449006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,501 - 150,578,804 (+)NCBI
mRatBN7.25145,228,388 - 145,294,050 (+)NCBI
Rnor_6.05151,210,927 - 151,277,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110397   ⟹   XP_038966325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,501 - 150,578,804 (+)NCBI
mRatBN7.25145,228,388 - 145,294,050 (+)NCBI
RefSeq Acc Id: XM_039110398   ⟹   XP_038966326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,512,182 - 150,578,804 (+)NCBI
mRatBN7.25145,228,230 - 145,294,050 (+)NCBI
RefSeq Acc Id: XM_063288060   ⟹   XP_063144130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,540,476 - 150,578,804 (+)NCBI
RefSeq Acc Id: XM_063288061   ⟹   XP_063144131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85150,540,275 - 150,569,376 (+)NCBI
RefSeq Acc Id: NP_001128428   ⟸   NM_001134956
- UniProtKB: D4A5R3 (UniProtKB/TrEMBL),   A6ISV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762373   ⟸   XM_008764151
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762374   ⟸   XM_008764152
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449006   ⟸   XM_017593517
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000059351   ⟸   ENSRNOT00000067939
RefSeq Acc Id: XP_038966326   ⟸   XM_039110398
- Peptide Label: isoform X1
- UniProtKB: D4A5R3 (UniProtKB/TrEMBL),   A6ISV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966325   ⟸   XM_039110397
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000084516   ⟸   ENSRNOT00000097308
Ensembl Acc Id: ENSRNOP00000092875   ⟸   ENSRNOT00000111674
Ensembl Acc Id: ENSRNOP00000091641   ⟸   ENSRNOT00000096702
Ensembl Acc Id: ENSRNOP00000096957   ⟸   ENSRNOT00000100034
RefSeq Acc Id: XP_063144131   ⟸   XM_063288061
- Peptide Label: isoform X1
- UniProtKB: D4A5R3 (UniProtKB/TrEMBL),   A6ISV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144130   ⟸   XM_063288060
- Peptide Label: isoform X1
- UniProtKB: D4A5R3 (UniProtKB/TrEMBL),   A6ISV7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102855   ⟸   ENSRNOT00000161039
Ensembl Acc Id: ENSRNOP00000100587   ⟸   ENSRNOT00000123873
Ensembl Acc Id: ENSRNOP00000103567   ⟸   ENSRNOT00000127652
Ensembl Acc Id: ENSRNOP00000111693   ⟸   ENSRNOT00000143813
Ensembl Acc Id: ENSRNOP00000109214   ⟸   ENSRNOT00000157643
Protein Domains
DUF4683

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5R3-F1-model_v2 AlphaFold D4A5R3 1-1592 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310031 AgrOrtholog
BioCyc Gene G2FUF-39647 BioCyc
Ensembl Genes ENSRNOG00000042855 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067939.3 UniProtKB/TrEMBL
  ENSRNOT00000096702 ENTREZGENE
  ENSRNOT00000096702.2 UniProtKB/TrEMBL
  ENSRNOT00000097308 ENTREZGENE
  ENSRNOT00000097308.2 UniProtKB/TrEMBL
  ENSRNOT00000100034 ENTREZGENE
  ENSRNOT00000100034.2 UniProtKB/TrEMBL
  ENSRNOT00000111674.2 UniProtKB/TrEMBL
  ENSRNOT00000123873 ENTREZGENE
  ENSRNOT00000123873.1 UniProtKB/TrEMBL
  ENSRNOT00000127652 ENTREZGENE
  ENSRNOT00000127652.1 UniProtKB/TrEMBL
  ENSRNOT00000143813.1 UniProtKB/TrEMBL
  ENSRNOT00000157643.1 UniProtKB/TrEMBL
  ENSRNOT00000161039.1 UniProtKB/TrEMBL
InterPro AHDC1 UniProtKB/TrEMBL
  DUF4683 UniProtKB/TrEMBL
KEGG Report rno:362617 UniProtKB/TrEMBL
NCBI Gene 362617 ENTREZGENE
PANTHER AT-HOOK DNA-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15617 UniProtKB/TrEMBL
Pfam DUF4683 UniProtKB/TrEMBL
PhenoGen Ahdc1 PhenoGen
RatGTEx ENSRNOG00000042855 RatGTEx
UniProt A6ISV7 ENTREZGENE, UniProtKB/TrEMBL
  D4A5R3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ahdc1  AT hook, DNA binding motif, containing 1   Ahdc1_predicted  AT hook, DNA binding motif, containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ahdc1_predicted  AT hook, DNA binding motif, containing 1 (predicted)  RGD1310031_predicted  similar to hypothetical protein MGC29331 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310031_predicted  similar to hypothetical protein MGC29331 (predicted)  LOC362617_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362617_predicted  similar to hypothetical protein MGC29331 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL