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Gene: Ric1 (RIC1 partner of RAB6A GEF complex) Rattus norvegicus

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Symbol:

Ric1

Name:

RIC1 partner of RAB6A GEF complex (Ensembl:RIC1 homolog, RAB6A GEF complex partner 1)

RGD ID:

1310016

Description:

Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in several processes, including negative regulation of protein catabolic process; regulation of extracellular matrix constituent secretion; and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Predicted to be part of Ric1-Rgp1 guanyl-nucleotide exchange factor complex. Predicted to be active in Golgi membrane and cytosol. Orthologous to human RIC1 (RIC1 homolog, RAB6A GEF complex partner 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

guanine nucleotide exchange factor subunit RIC1; LOC309306; RAB6A GEF complex partner 1; RAB6A-GEF complex partner protein 1; RGD1310016; RIC1 homolog, RAB6A GEF complex partner 1; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RIC1 (RIC1 partner of RAB6A GEF complex)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ric1 (RAB6A GEF complex partner 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ric1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RIC1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RIC1 (RIC1 homolog, RAB6A GEF complex partner 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ric1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RIC1 (RIC1 homolog, RAB6A GEF complex partner 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RIC1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ric1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ric1 (RIC1 partner of RAB6A GEF complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RIC1 (RIC1 partner of RAB6A GEF complex)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ric1 (RAB6A GEF complex partner 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ric1 (RIC1 homolog, RAB6A GEF complex partner 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R06F6.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RIC1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	RIC1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Rich	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ric1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ric1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	236,698,901 - 236,798,099 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	236,698,852 - 236,798,099 (+)	Ensembl				GRCr8
mRatBN7.2	1	227,285,510 - 227,384,553 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	227,285,210 - 227,382,863 (+)	Ensembl				mRatBN7.2
Rnor_6.0	1	247,688,778 - 247,784,219 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	247,688,789 - 247,781,875 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	254,939,213 - 255,038,567 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	233,219,303 - 233,321,540 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	224,435,684 - 224,535,464 (+)	NCBI		Celera
RGSC_v3.1	1	233,383,325 - 233,481,250 (+)	NCBI
Cytogenetic Map	1	q52	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CATIFA Syndrome (ISO)

epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

crotonaldehyde (ISO)

Dibutyl phosphate (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cranial skeletal system development (ISO)

intracellular protein transport (IBA,IEA)

negative regulation of protein catabolic process (ISO)

positive regulation of GTPase activity (ISO)

regulation of extracellular matrix constituent secretion (ISO)

retrograde transport, endosome to Golgi (IBA,ISO)

Cellular Component

cytosol (IBA,ISO)

Golgi membrane (IBA)

membrane (IEA,ISO)

protein-containing complex (ISO)

Ric1-Rgp1 guanyl-nucleotide exchange factor complex (IBA,IEA,ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (ISO)

protein binding (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23091056	PMID:31932796

Genomics

Comparative Map Data

Ric1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	236,698,901 - 236,798,099 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	236,698,852 - 236,798,099 (+)	Ensembl				GRCr8
mRatBN7.2	1	227,285,510 - 227,384,553 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	227,285,210 - 227,382,863 (+)	Ensembl				mRatBN7.2
Rnor_6.0	1	247,688,778 - 247,784,219 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	247,688,789 - 247,781,875 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	254,939,213 - 255,038,567 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	233,219,303 - 233,321,540 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	224,435,684 - 224,535,464 (+)	NCBI		Celera
RGSC_v3.1	1	233,383,325 - 233,481,250 (+)	NCBI
Cytogenetic Map	1	q52	NCBI

RIC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	5,629,107 - 5,778,633 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	5,629,025 - 5,776,557 (+)	Ensembl			hg38	GRCh38
GRCh37	9	5,629,107 - 5,776,557 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	5,646,654 - 5,764,309 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	5,554,974 - 5,714,045 (+)	NCBI		Celera
Cytogenetic Map	9	p24.1	NCBI
HuRef	9	5,584,858 - 5,732,422 (+)	NCBI		HuRef
CHM1_1	9	5,629,314 - 5,777,233 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	5,634,236 - 5,782,557 (+)	NCBI		T2T-CHM13v2.0

Ric1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	29,499,637 - 29,583,909 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	29,499,682 - 29,584,229 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	29,522,216 - 29,605,921 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	29,522,282 - 29,606,829 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	29,596,772 - 29,680,411 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	29,588,279 - 29,671,918 (+)	NCBI		MGSCv36	mm8
Celera	19	30,298,756 - 30,382,415 (+)	NCBI		Celera
Cytogenetic Map	19	C1	NCBI
cM Map	19	24.07	NCBI

Ric1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	9,675,654 - 9,770,174 (+)	Ensembl
ChiLan1.0	NW_004955434	9,675,654 - 9,770,174 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	118,794,754 - 118,942,752 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	118,800,701 - 118,948,719 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	5,449,982 - 5,598,891 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	5,633,779 - 5,779,884 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	5,633,779 - 5,779,884 (+)	Ensembl			panPan2	panpan1.1

RIC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	93,735,158 - 93,843,331 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	93,735,077 - 93,841,401 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	94,142,949 - 94,286,256 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	94,287,792 - 94,435,452 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	94,287,834 - 94,435,402 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	93,921,123 - 94,066,322 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	93,645,906 - 93,791,320 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	94,410,355 - 94,553,959 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ric1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	141,837,760 - 141,952,194 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936539	290,416 - 404,881 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936539	290,429 - 404,928 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	216,382,128 - 216,494,793 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	216,382,179 - 216,494,815 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	242,115,087 - 242,257,751 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	73,738,646 - 73,887,518 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	73,740,954 - 73,886,295 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	62,122,693 - 62,277,102 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ric1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	10,161,772 - 10,337,585 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ric1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	29,617,445 - 29,708,193 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ric1
415 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	55
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000021783, ENSRNOT00000033590
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	243666627	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
6480786	Bw97	Body weight QTL 97	5.03		body mass (VT:0001259)	body weight (CMO:0000012)	1	234540191	237018045	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

D1Got225

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	227,357,370 - 227,357,566 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	247,757,069 - 247,757,264	NCBI	Rnor6.0
Rnor_5.0	1	255,007,547 - 255,007,742	UniSTS	Rnor5.0
RGSC_v3.4	1	233,292,937 - 233,293,131	RGD	RGSC3.4
RGSC_v3.4	1	233,292,938 - 233,293,133	UniSTS	RGSC3.4
RGSC_v3.1	1	233,456,960 - 233,457,154	RGD
RH 3.4 Map	1	1619.0	UniSTS
RH 3.4 Map	1	1619.0	RGD
RH 2.0 Map	1	1182.5	RGD
Cytogenetic Map	1	q52	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001079614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021783 ⟹ ENSRNOP00000021783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,698,852 - 236,798,099 (+)	Ensembl
mRatBN7.2 Ensembl	1	227,285,210 - 227,382,863 (+)	Ensembl
Rnor_6.0 Ensembl	1	247,688,789 - 247,781,875 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121698 ⟹ ENSRNOP00000112318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,698,901 - 236,798,099 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141897 ⟹ ENSRNOP00000098850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	236,698,901 - 236,798,099 (+)	Ensembl

RefSeq Acc Id:

NM_001427735 ⟹ NP_001414664

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,698,901 - 236,798,099 (+)	NCBI

RefSeq Acc Id:

XM_006231255 ⟹ XP_006231317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,699,101 - 236,798,099 (+)	NCBI
mRatBN7.2	1	227,285,510 - 227,384,553 (+)	NCBI
Rnor_6.0	1	247,688,778 - 247,784,219 (+)	NCBI
Rnor_5.0	1	254,939,213 - 255,038,567 (+)	NCBI

Sequence:

show sequence

GGACTGTCGGGGCCGCGCGCGGACCATGTATTTCCTGAGCGGCTGGCCCAAGAGGCTGCTCTGC
GCGCCGCGGAGCCCGGCCGAGGCGCCGCTCCACGTCCAGTCTGACCCTCGGAGAGCGTTCTTCG
CCGTGCTGGCCCCGGCCCGCCTCAGCATCTGGTACAGCCGACCCAGTGTGTTAATTGTAACATA
CAAGGAACCAGCTAAATCGTCTGCTCAGTTTGGATCTTACACACAAGCTGAATGGAGGCCGAAC
AGTACCATGATAGCAGTGTCAACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAA
GAGGGGATAAATACCTTTATGAACCAGTGTATCCCAAAGGAAGTCCACAAATGAAGGGGATACC
TCATTTTAAGGAAGAACATTGCGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTG
CAAGCACCCATCATGAGTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGAC
TTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTCTCTACAGT
ACCCTTTTCAGTAGACCTTCAGTCATCTAGAGTAGGTTCATTCCTCGGCTTTGCAGATGTGCAC
ATTAAAGATATGGAATATTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAG
TTGGATTTATTACACCAGTATCGAGTAGATTTACTGCAGAGCAGCTTCATGGAGTTTGGCCACA
AGATGTTGTTGATGGGACTTGTGTTGCAGTAAATAACAAATACCGACTGATGGCCTTTGGTTGT
GCAAGTGGTTCTGTGCAAGTCTATACGATAGACAACACTACTGGAGCCATGCTGCTGTCTCATA
AACTAGAGCTTACAGCAAAGCAGTATCCTGACATCTGGAACAAAACAGGAGCTGTTAAATTGAT
TAGATGGTCTCCTGACAACAGTGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGG
AGTGTGTTTGGAGCCCAGCTGATTTGTACACTTGGAGGAGACTTTGCTTACAGGTCAGATGGTA
CCAAAAAAGATCCCCTTAAGATCAACTCCATGAGCTGGGGTGCAGAAGGCTATCACCTATGGGT
AATCAGTGAATTTGGTTCTCAGCACACTCAAACTGACACTGACCTCGGGAGTGCAGTTAAAGAG
CCCAGCATTTTGTTATTTCAGTTTATCAAGAGTGTACTCACTGTAAACCCTTGTATGAGTAACC
AAGAACAGGTGTTACTTCAGGGAGAAGATCGCTTATACTTGAACTGTGGAGAAGCCTCACAGAC
CCAAAATCTGAAGTACTCTTCAGCACGTGCTGAGCATATGCCCAGACACGAGAAGAGCCCATTT
GCAGATGGAGGTCTAGAGTCTCCAGGATTAAGCACTTTACTTGGACATCGACATTGGCATGTTG
TACAGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACT
TGGACAAAATATCGCTGTGGCTGGCAAGTTTGGGTTTGCGCATTATTCTTTACTTACCAAGAAA
TGGAAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGT
GGAATGACTTTATGGTCCTTGCCTGTTACAACTTAAGTGACCGCCAAGAAGAGCTCAGAATCTA
CCTACGAACATCAAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATAGAAACATTA
CTGCTTAGTGTCTTCCGGGACATGGTGGTAGTGTTTAGAGCAGACTGTTCAATATGCCTCTACA
GTATTGAAAGAAAATCCGATGGTTCGAGTACGACAGCGAGTGTTCAGGTTCTTCAGGAGGTCTC
CATGTCGAGGTACATTCCTCATCCCTTCCTGGTGGTGTCTGTCACACTGACGTCAGTGAGTACA
GAGAATGGCATCACCTTGAAAATGCCACAACAGGCTCGGGATGCAGAGAGCATAATGCTGAACC
TTGCAGGACAGCTCATCATGATGCAGAGGGACCGGTCAGGCCCTCAGATCCGGGAGAAGGACAG
TAACCCTAGCCAAAGGAAACTCGTGAGTAACGCTCTGCCGTTCTGCCCTCCCGTTGTACTAGCT
CAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGG
CCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCA
CCGAAAGCCCCACTCCTTCTTGTCCCAGCGGATCATGCTGCCTTTCCACATCAACATTTACCCC
CTCGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAATGACACTCTGCTCTATGATT
CTCTGTACACACGGAACAGTGCTAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGCGTTGTGGA
GAGAACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTTGGCGAG
CAAGCCCTCCTTCTGGCTCAGTCGTGCGCTGCGTTAGCTTACTTCCCTCATGTGTTGGAGCTCA
TGCTCCATGAAGTGCTGGAAGAGGAAGCTAGCTCACGGGAGCCCATTCCCGACCCGCTGCTTCC
TACCGTGGCGAAGTTTATCTCCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGCGCCCGG
AAGACTGAGTATGCGCTGTGGAATTACCTTTTTGCAGCTGTTGGGAACCCCAAGGACTTATTCG
AGGAATGTTTGATGGCTCAGGACTTGGACACAGCTGCCTCTTACCTTATTATCCTACAGAATAT
GGAAGTCCCCGCAGTAAGTAGGCAGCATGCCACCCTTCTGTTCAACACAGCACTGGAACAGGGC
AAATGGGACCTGTGTCGACACATGATTAGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGA
CCCCTCCATCCACACCGACATCTCAGGAGCCCAGTTCAAGTGGTGGCTTTGAGTTCTTCAGGAA
TCGCAGCATCAGTTTATCCCAGTCAGCTGAAAATGTTCCTCCTGGTAAATTCGGCTTACAGAAA
ACTCTAAGTATGCCAACTGGTCCTTCTGGGAAAAGGTGGAGCAAAGACAGTGACTGTGCAGAGA
ACATGTACATCGACATGATGCTGTGGCGACACGCTCGGCGTCTCCTAGAAGACGTGCGCCTGAA
GGACCTGGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTCATCAGTTGGCTTTGCAAAGAACGC
ACTCGAGCCGCCCGTGTGGACAACTTTGTAGTAGCCCTGAAGAGACTGCACAAGGATTTCCTGT
GGCCTCTTCCCATTATCCCAGCCTCTTCCATTAGTTCCCCTTTCAAAAATGGGAAATGTCGAGC
AGTGGGAGAGCAGCTGTTGAAGTCTCAGTCAGCTGACCCTTTTCTTACCCCTGAGATGGATGCC
GGCATCTCTACCATCCAACGCAGTCAGAGCTGGCTCAGCAGCATTGGTCCCACCCATCGTGACG
CAGACATAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCCTCTCACCATTATCTAATAG
AGGGGATGAATGCAGCATTGGCTCAGCTACAGACTTGACTGAAAGCAGCTCCATGGTGGATGGA
GACTGGACAATGGTGGACGAAAACTTCTCCACACTCAGCTTGACTCAGTCTGAGCTGGAGCACA
TCTCCATGGAGTTGGCAAGCAAAGGGCCCCACAAATCTCAAGTTCAGCTGCGTTATCTGCTGCA
CATTTTCATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAAAGAATCC
TCCGTGGTCAGTCAGATTCTTGGGATTGCTCAGTCTTCAGAGATAGATGGAGAGATGTTACAGA
ACATAAAAGCAGGGCTGCACGCCGTAGACCGATGGGCCTCTACAGACTGCCCTGGATATAAGCC
ATTTTTAAACATCATTAAGCCACAACTACAGAAGCTCAGTGAGATAACGGAAGAGTTGGTCCAG
CCTGACACCTTCCAGCCAATAACAGTGGGTAAGAGTCCTGAACAGACCAGCCCCCGGGCAGAGG
AGAGCAGGGGCTCTTCTAGCCATGGGAGCATCACTCAGAGTGAGACCGGGAGTAACAACAGCAT
GGTCAGCCGGAAAGAAGAGGACACAACACAAGCAGATGAAGAGGAGCCATTTCAGGATGGGGCT
TATGACTGTTCTGTGTCCTGACAACGAGCAGGCAGTATTAGTCACAGCAGCGTGCACCAGAGCA
CCTTGTGACCTGCTGAGTGACGTAACAGGTAAAAGAGCTTGGGGCGGAACTCTTTCATAAAGTG
TTATAATTTAATGAATTCTTCCTCTAAATCTCTTCGACTCCATTTAAAAAAAGAAGTGTGGTAT
CAAAGCCTCTTTTTAAGCTGCAGTAGAAAGTAATGAGCAGTATATAGATGCACATGCACATATG
ATATTTGATTTTCTTCACAGTTTGTAGTTGTAGGAATTATTCATAACGGATCGTTAGTGTAGGG
ATTACTCTGCCCCAAGTGAGCTTATTTTTTCACTCCTATGGCTTATGTACTTTCTGGTTCAGCA
TGTCTGACTGGTTTGTCCTGTGGGTGGGTTACCTTTCTTTAAATGAGTGCTAAGGCGCTTGCTG
CAGCTCGTCAGCTGCCTGAGCAACTGTCTGCTTCCGTGTGGTGTGGAGTCAGCCGGACCCTTAC
TTGGTCCTTCGAATCCTGCGCTTGTAAGGAAGGCTCAGTGGACAGACACCTTGTGACTTTGGTA
CGTTGTTCACCAGCAGTCCTGGGTTGATGGAAGCCAGTTACCTGTGACTTAATGTGCCTGTTTT
AGCAAGCTTAATTCCTTCTAGATCAGTGTGGGCAGAGGGGGAGGGGTTCTTATCAATTATGCTG
ACACCACTAAATTTTGTATCAAAGAACTGTATCTTTTTGTGAATATTCATGTAAATATACTCAA
AGGCACTGTCCATATTTTTAAGGTGTGTATTATAATCTGTAAGGTTTACGCTGGATTCTGCATG
ACTATACTCACTCTTGGAATAAAGACAAGACTTTCTTCTTTCCAAAATGAGCAGTCATCATAGA
GGAAGACAGGTTTGTTGGCCCAGCTGTAAAGTAGTAGTCATCCCACTGATCATGAGGGGAACAG
GTTTTGTGCAAATTAATGGAGTTTCTTATTTATTGCTTTTGTAAATTGAATAAAAATGGGCTTT
TATGTAAATAGACTGTGGGATCCTGTATTATCAGCTACTAAAAATTACTTTGTAAATTCTTTAT
TATAAAGTTTAAAAATATTTTATGTATTTCTAGATGTGACTTAAATTTTAGTTTTCATACATTA
TGAAAGCAGAACTACATATTCAGTTGCTTCAGACTAAACACATACCTACCACATGTAATTCTAA
TTATTAATAACAGTATTAATTTAGATAGCTTATTTGTACTGTGCAATTTGAACAAGGAATGCAA
TGTTATTTTTTATAAAATCTTGTTTATTTTTATAACAACAATGTATTTGAAGTGGACCAAATTC
GTACCACCGTGTAAAACAGCCTCTCTTATAATGCAGATGTTGCTTAGAAATGGAATTCAGCCCT
CTGTTCCTGCCTTCTAAACTAAAGAGATAGACTGCATCCTCTTAGGCAGTACCTTTAGAGGAAA
CCTCAGAATTATTTTGAAATTATTTCAAATTTCACCACCTAGTAAAAATTATTGAATTTAGTAA
TTACTGTTATTTCCTTTCTACATTAGAAGTGCAATAATTTTATATAATAAAATCCCTGAATGGG
TGAAATATGTTGCTATTGGTACCTGGTCCTTCTGGTGCTACTTTTATTTAAGTCATTGTATCAA
ATCACCACCTTGTTCTGAATTTTAAAATAGAGAATAAAGTTTCCTATGTAAGTAGATGCCGTGC
AGCAAAAAAAACAAAAACTAAGCTGAAATATCTTCTGTCCCATTCCATTAGGGACAAGAGCCAG
CAATTCTTCTGTATCTAGTCAATTTCTAATGTGACTACTCAGTTATTAAAGCAGTGTTACCATC
ATAAGCAGCAGTGGTGTTTCCAGATGTCTTACATGGGTGCTGCTGAGTTCATCTAACTTTGGTG
GTGAGGGCAGTATAAGGACGAGCATACGGCCTCTCATGCTAACCAAGTGTTCCACTACTGAGTT
ATATCCCACAAGCCCCTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAG
CCTTGCCCAAGCTGGACACCAATTTGTAACTCTTCCTTAGCTGCCCCCATAACTGGTTTTTACA
GCCGTGTGCTGCCATACCCAGTCATAGGACTATCACCTCACAATCTTAAAAGCAGAGTCTGGAT
TAGCTAATGTGACTCCTGTGGTTTGAGCTGGGAATGACTCAGATAAAATACATAGTGTGTACTG
AGTAGAACTAGGAAACACCAAAGCAAGAAATTTGGCAAGCTTAATAAAAATTATTCTTTGGTTG
TTGTATACTTTTTAAAAAATTGTGTTTTGCTGCATTGTTTGGTTTAAAACATATCACCTGTAAA
GCCATATCTTTAATGAACTTAAATATTCAGCATAACTATTTGAAAGCTAATATATATGGTTAAA
TTTTTTGCTGATACCAAAACATATCATTTGGAGATACAAACAACTTTTGCTTGTAATTAAAGTT
GCTGCTGCTTCTGTAATGTGTATTCCCACCCGTTGGTAAAGGGTAATAAAACTATTACACAAAC
AAA

hide sequence

RefSeq Acc Id:

XM_006231256 ⟹ XP_006231318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,699,101 - 236,798,099 (+)	NCBI
mRatBN7.2	1	227,285,510 - 227,384,553 (+)	NCBI
Rnor_6.0	1	247,688,778 - 247,784,219 (+)	NCBI
Rnor_5.0	1	254,939,213 - 255,038,567 (+)	NCBI

Sequence:

show sequence

GGACTGTCGGGGCCGCGCGCGGACCATGTATTTCCTGAGCGGCTGGCCCAAGAGGCTGCTCTGC
GCGCCGCGGAGCCCGGCCGAGGCGCCGCTCCACGTCCAGTCTGACCCTCGGAGAGCGTTCTTCG
CCGTGCTGGCCCCGGCCCGCCTCAGCATCTGGTACAGCCGACCCAGTGTGTTAATTGTAACATA
CAAGGAACCAGCTAAATCGTCTGCTCAGTTTGGATCTTACACACAAGCTGAATGGAGGCCGAAC
AGTACCATGATAGCAGTGTCAACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAA
GAGGGGATAAATACCTTTATGAACCAGTGTATCCCAAAGGAAGTCCACAAATGAAGGGGATACC
TCATTTTAAGGAAGAACATTGCGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTG
CAAGCACCCATCATGAGTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGAC
TTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTCTCTACAGT
ACCCTTTTCAGTAGACCTTCAGTCATCTAGAGGTTCATTCCTCGGCTTTGCAGATGTGCACATT
AAAGATATGGAATATTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTG
GATTTATTACACCAGTATCGAGTAGATTTACTGCAGAGCAGCTTCATGGAGTTTGGCCACAAGA
TGTTGTTGATGGGACTTGTGTTGCAGTAAATAACAAATACCGACTGATGGCCTTTGGTTGTGCA
AGTGGTTCTGTGCAAGTCTATACGATAGACAACACTACTGGAGCCATGCTGCTGTCTCATAAAC
TAGAGCTTACAGCAAAGCAGTATCCTGACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAG
ATGGTCTCCTGACAACAGTGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGT
GTGTTTGGAGCCCAGCTGATTTGTACACTTGGAGGAGACTTTGCTTACAGGTCAGATGGTACCA
AAAAAGATCCCCTTAAGATCAACTCCATGAGCTGGGGTGCAGAAGGCTATCACCTATGGGTAAT
CAGTGAATTTGGTTCTCAGCACACTCAAACTGACACTGACCTCGGGAGTGCAGTTAAAGAGCCC
AGCATTTTGTTATTTCAGTTTATCAAGAGTGTACTCACTGTAAACCCTTGTATGAGTAACCAAG
AACAGGTGTTACTTCAGGGAGAAGATCGCTTATACTTGAACTGTGGAGAAGCCTCACAGACCCA
AAATCTGAAGTACTCTTCAGCACGTGCTGAGCATATGCCCAGACACGAGAAGAGCCCATTTGCA
GATGGAGGTCTAGAGTCTCCAGGATTAAGCACTTTACTTGGACATCGACATTGGCATGTTGTAC
AGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGG
ACAAAATATCGCTGTGGCTGGCAAGTTTGGGTTTGCGCATTATTCTTTACTTACCAAGAAATGG
AAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGA
ATGACTTTATGGTCCTTGCCTGTTACAACTTAAGTGACCGCCAAGAAGAGCTCAGAATCTACCT
ACGAACATCAAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATAGAAACATTACTG
CTTAGTGTCTTCCGGGACATGGTGGTAGTGTTTAGAGCAGACTGTTCAATATGCCTCTACAGTA
TTGAAAGAAAATCCGATGGTTCGAGTACGACAGCGAGTGTTCAGGTTCTTCAGGAGGTCTCCAT
GTCGAGGTACATTCCTCATCCCTTCCTGGTGGTGTCTGTCACACTGACGTCAGTGAGTACAGAG
AATGGCATCACCTTGAAAATGCCACAACAGGCTCGGGATGCAGAGAGCATAATGCTGAACCTTG
CAGGACAGCTCATCATGATGCAGAGGGACCGGTCAGGCCCTCAGATCCGGGAGAAGGACAGTAA
CCCTAGCCAAAGGAAACTCGTGAGTAACGCTCTGCCGTTCTGCCCTCCCGTTGTACTAGCTCAG
TCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCC
TCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCACCG
AAAGCCCCACTCCTTCTTGTCCCAGCGGATCATGCTGCCTTTCCACATCAACATTTACCCCCTC
GCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAATGACACTCTGCTCTATGATTCTC
TGTACACACGGAACAGTGCTAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGCGTTGTGGAGAG
AACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTTGGCGAGCAA
GCCCTCCTTCTGGCTCAGTCGTGCGCTGCGTTAGCTTACTTCCCTCATGTGTTGGAGCTCATGC
TCCATGAAGTGCTGGAAGAGGAAGCTAGCTCACGGGAGCCCATTCCCGACCCGCTGCTTCCTAC
CGTGGCGAAGTTTATCTCCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGCGCCCGGAAG
ACTGAGTATGCGCTGTGGAATTACCTTTTTGCAGCTGTTGGGAACCCCAAGGACTTATTCGAGG
AATGTTTGATGGCTCAGGACTTGGACACAGCTGCCTCTTACCTTATTATCCTACAGAATATGGA
AGTCCCCGCAGTAAGTAGGCAGCATGCCACCCTTCTGTTCAACACAGCACTGGAACAGGGCAAA
TGGGACCTGTGTCGACACATGATTAGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCC
CTCCATCCACACCGACATCTCAGGAGCCCAGTTCAAGTGGTGGCTTTGAGTTCTTCAGGAATCG
CAGCATCAGTTTATCCCAGTCAGCTGAAAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACT
CTAAGTATGCCAACTGGTCCTTCTGGGAAAAGGTGGAGCAAAGACAGTGACTGTGCAGAGAACA
TGTACATCGACATGATGCTGTGGCGACACGCTCGGCGTCTCCTAGAAGACGTGCGCCTGAAGGA
CCTGGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTCATCAGTTGGCTTTGCAAAGAACGCACT
CGAGCCGCCCGTGTGGACAACTTTGTAGTAGCCCTGAAGAGACTGCACAAGGATTTCCTGTGGC
CTCTTCCCATTATCCCAGCCTCTTCCATTAGTTCCCCTTTCAAAAATGGGAAATGTCGAGCAGT
GGGAGAGCAGCTGTTGAAGTCTCAGTCAGCTGACCCTTTTCTTACCCCTGAGATGGATGCCGGC
ATCTCTACCATCCAACGCAGTCAGAGCTGGCTCAGCAGCATTGGTCCCACCCATCGTGACGCAG
ACATAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCCTCTCACCATTATCTAATAGAGG
GGATGAATGCAGCATTGGCTCAGCTACAGACTTGACTGAAAGCAGCTCCATGGTGGATGGAGAC
TGGACAATGGTGGACGAAAACTTCTCCACACTCAGCTTGACTCAGTCTGAGCTGGAGCACATCT
CCATGGAGTTGGCAAGCAAAGGGCCCCACAAATCTCAAGTTCAGCTGCGTTATCTGCTGCACAT
TTTCATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAAAGAATCCTCC
GTGGTCAGTCAGATTCTTGGGATTGCTCAGTCTTCAGAGATAGATGGAGAGATGTTACAGAACA
TAAAAGCAGGGCTGCACGCCGTAGACCGATGGGCCTCTACAGACTGCCCTGGATATAAGCCATT
TTTAAACATCATTAAGCCACAACTACAGAAGCTCAGTGAGATAACGGAAGAGTTGGTCCAGCCT
GACACCTTCCAGCCAATAACAGTGGGTAAGAGTCCTGAACAGACCAGCCCCCGGGCAGAGGAGA
GCAGGGGCTCTTCTAGCCATGGGAGCATCACTCAGAGTGAGACCGGGAGTAACAACAGCATGGT
CAGCCGGAAAGAAGAGGACACAACACAAGCAGATGAAGAGGAGCCATTTCAGGATGGGGCTTAT
GACTGTTCTGTGTCCTGACAACGAGCAGGCAGTATTAGTCACAGCAGCGTGCACCAGAGCACCT
TGTGACCTGCTGAGTGACGTAACAGGTAAAAGAGCTTGGGGCGGAACTCTTTCATAAAGTGTTA
TAATTTAATGAATTCTTCCTCTAAATCTCTTCGACTCCATTTAAAAAAAGAAGTGTGGTATCAA
AGCCTCTTTTTAAGCTGCAGTAGAAAGTAATGAGCAGTATATAGATGCACATGCACATATGATA
TTTGATTTTCTTCACAGTTTGTAGTTGTAGGAATTATTCATAACGGATCGTTAGTGTAGGGATT
ACTCTGCCCCAAGTGAGCTTATTTTTTCACTCCTATGGCTTATGTACTTTCTGGTTCAGCATGT
CTGACTGGTTTGTCCTGTGGGTGGGTTACCTTTCTTTAAATGAGTGCTAAGGCGCTTGCTGCAG
CTCGTCAGCTGCCTGAGCAACTGTCTGCTTCCGTGTGGTGTGGAGTCAGCCGGACCCTTACTTG
GTCCTTCGAATCCTGCGCTTGTAAGGAAGGCTCAGTGGACAGACACCTTGTGACTTTGGTACGT
TGTTCACCAGCAGTCCTGGGTTGATGGAAGCCAGTTACCTGTGACTTAATGTGCCTGTTTTAGC
AAGCTTAATTCCTTCTAGATCAGTGTGGGCAGAGGGGGAGGGGTTCTTATCAATTATGCTGACA
CCACTAAATTTTGTATCAAAGAACTGTATCTTTTTGTGAATATTCATGTAAATATACTCAAAGG
CACTGTCCATATTTTTAAGGTGTGTATTATAATCTGTAAGGTTTACGCTGGATTCTGCATGACT
ATACTCACTCTTGGAATAAAGACAAGACTTTCTTCTTTCCAAAATGAGCAGTCATCATAGAGGA
AGACAGGTTTGTTGGCCCAGCTGTAAAGTAGTAGTCATCCCACTGATCATGAGGGGAACAGGTT
TTGTGCAAATTAATGGAGTTTCTTATTTATTGCTTTTGTAAATTGAATAAAAATGGGCTTTTAT
GTAAATAGACTGTGGGATCCTGTATTATCAGCTACTAAAAATTACTTTGTAAATTCTTTATTAT
AAAGTTTAAAAATATTTTATGTATTTCTAGATGTGACTTAAATTTTAGTTTTCATACATTATGA
AAGCAGAACTACATATTCAGTTGCTTCAGACTAAACACATACCTACCACATGTAATTCTAATTA
TTAATAACAGTATTAATTTAGATAGCTTATTTGTACTGTGCAATTTGAACAAGGAATGCAATGT
TATTTTTTATAAAATCTTGTTTATTTTTATAACAACAATGTATTTGAAGTGGACCAAATTCGTA
CCACCGTGTAAAACAGCCTCTCTTATAATGCAGATGTTGCTTAGAAATGGAATTCAGCCCTCTG
TTCCTGCCTTCTAAACTAAAGAGATAGACTGCATCCTCTTAGGCAGTACCTTTAGAGGAAACCT
CAGAATTATTTTGAAATTATTTCAAATTTCACCACCTAGTAAAAATTATTGAATTTAGTAATTA
CTGTTATTTCCTTTCTACATTAGAAGTGCAATAATTTTATATAATAAAATCCCTGAATGGGTGA
AATATGTTGCTATTGGTACCTGGTCCTTCTGGTGCTACTTTTATTTAAGTCATTGTATCAAATC
ACCACCTTGTTCTGAATTTTAAAATAGAGAATAAAGTTTCCTATGTAAGTAGATGCCGTGCAGC
AAAAAAAACAAAAACTAAGCTGAAATATCTTCTGTCCCATTCCATTAGGGACAAGAGCCAGCAA
TTCTTCTGTATCTAGTCAATTTCTAATGTGACTACTCAGTTATTAAAGCAGTGTTACCATCATA
AGCAGCAGTGGTGTTTCCAGATGTCTTACATGGGTGCTGCTGAGTTCATCTAACTTTGGTGGTG
AGGGCAGTATAAGGACGAGCATACGGCCTCTCATGCTAACCAAGTGTTCCACTACTGAGTTATA
TCCCACAAGCCCCTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAGCCT
TGCCCAAGCTGGACACCAATTTGTAACTCTTCCTTAGCTGCCCCCATAACTGGTTTTTACAGCC
GTGTGCTGCCATACCCAGTCATAGGACTATCACCTCACAATCTTAAAAGCAGAGTCTGGATTAG
CTAATGTGACTCCTGTGGTTTGAGCTGGGAATGACTCAGATAAAATACATAGTGTGTACTGAGT
AGAACTAGGAAACACCAAAGCAAGAAATTTGGCAAGCTTAATAAAAATTATTCTTTGGTTGTTG
TATACTTTTTAAAAAATTGTGTTTTGCTGCATTGTTTGGTTTAAAACATATCACCTGTAAAGCC
ATATCTTTAATGAACTTAAATATTCAGCATAACTATTTGAAAGCTAATATATATGGTTAAATTT
TTTGCTGATACCAAAACATATCATTTGGAGATACAAACAACTTTTGCTTGTAATTAAAGTTGCT
GCTGCTTCTGTAATGTGTATTCCCACCCGTTGGTAAAGGGTAATAAAACTATTACACAAACAAA

hide sequence

RefSeq Acc Id:

XM_039101403 ⟹ XP_038957331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	236,726,959 - 236,798,099 (+)	NCBI
mRatBN7.2	1	227,313,397 - 227,384,553 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414664	(Get FASTA)	NCBI Sequence Viewer
	XP_006231317	(Get FASTA)	NCBI Sequence Viewer
	XP_006231318	(Get FASTA)	NCBI Sequence Viewer
	XP_038957331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021783.6
	ENSRNOP00000098850
	ENSRNOP00000098850.1
	ENSRNOP00000112318.1

RefSeq Acc Id:	XP_006231317 ⟸ XM_006231255
- Peptide Label:	isoform X1
- UniProtKB:	A6I0W8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYSRPSVLIVTYKEPAKSSA QFGSYTQAEWRPNSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCA PALNLEMKKILDLQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLSTVPFSVDLQS SRVGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVVDGTCV AVNNKYRLMAFGCASGSVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSA VIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISEFGSQH TQTDTDLGSAVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNLKYSSA RAEHMPRHEKSPFADGGLESPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVAG KFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNLSDRQEELRIYLRTSNLDN AFAHVTKAPIETLLLSVFRDMVVVFRADCSICLYSIERKSDGSSTTASVQVLQEVSMSRYIPHP FLVVSVTLTSVSTENGITLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSNPSQRKLV SNALPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLS QRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRNSAREQLEVLFPFCVVERTSQIYLH HILRQLLVRNLGEQALLLAQSCAALAYFPHVLELMLHEVLEEEASSREPIPDPLLPTVAKFISE FPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQ HATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQS AENVPPGKFGLQKTLSMPTGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQ LGFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQLLKS QSADPFLTPEMDAGISTIQRSQSWLSSIGPTHRDADIASSPGPQMQDAFLSPLSNRGDECSIGS ATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCL DWCVVIGLILKESSVVSQILGIAQSSEIDGEMLQNIKAGLHAVDRWASTDCPGYKPFLNIIKPQ LQKLSEITEELVQPDTFQPITVGKSPEQTSPRAEESRGSSSHGSITQSETGSNNSMVSRKEEDT TQADEEEPFQDGAYDCSVS hide sequence

RefSeq Acc Id:	XP_006231318 ⟸ XM_006231256
- Peptide Label:	isoform X2
- UniProtKB:	A6I0W8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYSRPSVLIVTYKEPAKSSA QFGSYTQAEWRPNSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCA PALNLEMKKILDLQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLSTVPFSVDLQS SRGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVVDGTCVA VNNKYRLMAFGCASGSVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAV IVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISEFGSQHT QTDTDLGSAVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNLKYSSAR AEHMPRHEKSPFADGGLESPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVAGK FGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNLSDRQEELRIYLRTSNLDNA FAHVTKAPIETLLLSVFRDMVVVFRADCSICLYSIERKSDGSSTTASVQVLQEVSMSRYIPHPF LVVSVTLTSVSTENGITLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSNPSQRKLVS NALPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQ RIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRNSAREQLEVLFPFCVVERTSQIYLHH ILRQLLVRNLGEQALLLAQSCAALAYFPHVLELMLHEVLEEEASSREPIPDPLLPTVAKFISEF PLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQH ATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSA ENVPPGKFGLQKTLSMPTGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQL GFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQLLKSQ SADPFLTPEMDAGISTIQRSQSWLSSIGPTHRDADIASSPGPQMQDAFLSPLSNRGDECSIGSA TDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLD WCVVIGLILKESSVVSQILGIAQSSEIDGEMLQNIKAGLHAVDRWASTDCPGYKPFLNIIKPQL QKLSEITEELVQPDTFQPITVGKSPEQTSPRAEESRGSSSHGSITQSETGSNNSMVSRKEEDTT QADEEEPFQDGAYDCSVS hide sequence

Ensembl Acc Id:

ENSRNOP00000021783 ⟸ ENSRNOT00000021783

RefSeq Acc Id:	XP_038957331 ⟸ XM_039101403
- Peptide Label:	isoform X3
- UniProtKB:	A6I0W8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414664 ⟸ NM_001427735
- UniProtKB:	D4A224 (UniProtKB/TrEMBL), A6I0W8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112318 ⟸ ENSRNOT00000121698

Ensembl Acc Id:

ENSRNOP00000098850 ⟸ ENSRNOT00000141897

Protein Domains

RIC1 C-terminal alpha solenoid region

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A224-F1-model_v2	AlphaFold	D4A224	1-1423	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310016	AgrOrtholog
BioCyc Gene	G2FUF-55965	BioCyc
Ensembl Genes	ENSRNOG00000016172	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021783.10	UniProtKB/TrEMBL
	ENSRNOT00000121698.1	UniProtKB/TrEMBL
	ENSRNOT00000141897	ENTREZGENE
	ENSRNOT00000141897.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Quino_amine_DH_bsu	UniProtKB/TrEMBL
	Ribosome_control_1	UniProtKB/TrEMBL
	Ric1	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
NCBI Gene	309306	ENTREZGENE
PANTHER	GUANINE NUCLEOTIDE EXCHANGE FACTOR SUBUNIT RIC1	UniProtKB/TrEMBL
	PTHR22746	UniProtKB/TrEMBL
Pfam	Beta-prop_RIC1_2nd	UniProtKB/TrEMBL
	RIC1	UniProtKB/TrEMBL
PhenoGen	Ric1	PhenoGen
RatGTEx	ENSRNOG00000016172	RatGTEx
Superfamily-SCOP	SSF50969	UniProtKB/TrEMBL
UniProt	A0ABK0L4L7_RAT	UniProtKB/TrEMBL
	A0ABK0M4J9_RAT	UniProtKB/TrEMBL
	A6I0W8	ENTREZGENE, UniProtKB/TrEMBL
	D4A224	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Ric1	RIC1 partner of RAB6A GEF complex	Ric1	RIC1 homolog, RAB6A GEF complex partner 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-30	Ric1	RIC1 homolog, RAB6A GEF complex partner 1	Ric1	RAB6A GEF complex partner 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-06	Ric1	RAB6A GEF complex partner 1	RGD1310016	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310016	similar to hypothetical protein	RGD1310016_predicted	similar to hypothetical protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310016_predicted	similar to hypothetical protein (predicted)	LOC309306_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC309306_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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