Sbno1 (strawberry notch homolog 1) - Rat Genome Database

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Gene: Sbno1 (strawberry notch homolog 1) Rattus norvegicus
Analyze
Symbol: Sbno1
Name: strawberry notch homolog 1
RGD ID: 1310005
Description: Predicted to enable chromatin DNA binding activity and histone binding activity. Predicted to be involved in several processes, including negative regulation of neuroinflammatory response; positive regulation of neural precursor cell proliferation; and regulation of signal transduction. Predicted to be active in nucleus. Orthologous to human SBNO1 (strawberry notch homolog 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304470; protein strawberry notch homolog 1; sno, strawberry notch homolog 1; sno, strawberry notch homolog 1 (Drosophila); strawberry notch homolog 1 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,835,306 - 37,895,861 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1237,846,514 - 37,891,231 (+)EnsemblGRCr8
mRatBN7.21232,175,176 - 32,234,200 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,185,485 - 32,230,158 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,354,678 - 33,409,651 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,966,008 - 34,020,981 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,017,876 - 33,072,852 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,593,692 - 37,650,761 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,593,874 - 37,649,036 (+)Ensemblrn6Rnor6.0
Rnor_5.01239,464,590 - 39,524,761 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,289,890 - 33,345,306 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1233,863,575 - 33,918,125 (+)NCBICelera
RGSC_v3.11233,153,264 - 33,207,431 (+)NCBI
Cytogenetic Map12q15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amitrole  (EXP)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
ketoconazole  (EXP)
leflunomide  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25931508  


Genomics

Comparative Map Data
Sbno1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,835,306 - 37,895,861 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1237,846,514 - 37,891,231 (+)EnsemblGRCr8
mRatBN7.21232,175,176 - 32,234,200 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,185,485 - 32,230,158 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,354,678 - 33,409,651 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,966,008 - 34,020,981 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,017,876 - 33,072,852 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,593,692 - 37,650,761 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,593,874 - 37,649,036 (+)Ensemblrn6Rnor6.0
Rnor_5.01239,464,590 - 39,524,761 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,289,890 - 33,345,306 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1233,863,575 - 33,918,125 (+)NCBICelera
RGSC_v3.11233,153,264 - 33,207,431 (+)NCBI
Cytogenetic Map12q15NCBI
SBNO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,289,109 - 123,364,847 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,289,109 - 123,365,184 (-)Ensemblhg38GRCh38
GRCh3712123,773,656 - 123,849,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,346,408 - 122,400,941 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412122,305,334 - 122,359,868NCBI
Celera12123,365,858 - 123,427,151 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,734,825 - 120,795,939 (-)NCBIHuRef
CHM1_112123,741,939 - 123,803,261 (-)NCBICHM1_1
T2T-CHM13v2.012123,285,663 - 123,361,354 (-)NCBIT2T-CHM13v2.0
Sbno1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,506,765 - 124,564,059 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,506,765 - 124,564,064 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385124,368,702 - 124,426,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,368,702 - 124,426,001 (-)Ensemblmm10GRCm38
MGSCv375124,818,711 - 124,875,923 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365124,629,320 - 124,686,532 (-)NCBIMGSCv36mm8
Celera5121,443,785 - 121,498,991 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.54NCBI
Sbno1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,528,652 - 5,576,234 (+)Ensembl
ChiLan1.0NW_0049554825,519,165 - 5,571,416 (+)NCBIChiLan1.0ChiLan1.0
SBNO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,376,546 - 131,452,143 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,372,922 - 131,448,524 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,892,270 - 120,962,576 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,118,553 - 125,192,870 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,121,471 - 125,179,151 (-)EnsemblpanPan2panpan1.1
SBNO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,207,420 - 6,269,406 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,216,435 - 6,263,098 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha266,369,602 - 6,431,588 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0266,457,309 - 6,519,302 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,457,316 - 6,514,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,390,694 - 6,452,673 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,482,557 - 6,544,556 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,436,119 - 6,498,102 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sbno1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,032,197 - 158,095,772 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,393,799 - 1,442,298 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,383,652 - 1,442,298 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SBNO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,571,125 - 29,620,090 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11429,559,103 - 29,622,221 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,250,739 - 31,312,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SBNO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,633,151 - 118,702,472 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,634,332 - 118,677,415 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037126,584,244 - 126,679,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sbno1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474723,214,619 - 23,275,928 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sbno1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11629,446,595 - 29,500,429 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sbno1
308 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:142
Interacting mature miRNAs:153
Transcripts:ENSRNOT00000057902
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
BI275304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,229,695 - 32,229,861 (+)MAPPERmRatBN7.2
mRatBN7.2162,441,525 - 2,441,691 (-)MAPPERmRatBN7.2
mRatBN7.21232,229,695 - 32,229,861 (-)MAPPERmRatBN7.2
mRatBN7.2162,441,525 - 2,441,691 (+)MAPPERmRatBN7.2
Rnor_6.01237,648,574 - 37,648,739NCBIRnor6.0
Rnor_6.0162,884,301 - 2,884,466NCBIRnor6.0
Rnor_5.0162,855,294 - 2,855,459UniSTSRnor5.0
Rnor_5.01239,519,562 - 39,519,727UniSTSRnor5.0
RGSC_v3.4162,525,046 - 2,525,211UniSTSRGSC3.4
RGSC_v3.41233,344,844 - 33,345,009UniSTSRGSC3.4
Celera1233,917,663 - 33,917,828UniSTS
Celera162,406,487 - 2,406,652UniSTS
Cytogenetic Map12q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000057902   ⟹   ENSRNOP00000054711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,846,514 - 37,891,231 (+)Ensembl
mRatBN7.2 Ensembl1232,185,485 - 32,230,158 (+)Ensembl
Rnor_6.0 Ensembl1237,593,874 - 37,649,036 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088006   ⟹   ENSRNOP00000072577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,846,514 - 37,891,231 (+)Ensembl
mRatBN7.2 Ensembl1232,185,538 - 32,230,158 (+)Ensembl
Rnor_6.0 Ensembl1237,603,986 - 37,647,773 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088787   ⟹   ENSRNOP00000073430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,846,514 - 37,884,796 (+)Ensembl
mRatBN7.2 Ensembl1232,185,485 - 32,223,828 (+)Ensembl
Rnor_6.0 Ensembl1237,594,185 - 37,647,971 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102429   ⟹   ENSRNOP00000097893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,846,514 - 37,891,231 (+)Ensembl
mRatBN7.2 Ensembl1232,185,538 - 32,230,158 (+)Ensembl
RefSeq Acc Id: NM_001389247   ⟹   NP_001376176
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,836,284 - 37,891,231 (+)NCBI
mRatBN7.21232,175,308 - 32,230,264 (+)NCBI
RefSeq Acc Id: NM_001389248   ⟹   NP_001376177
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,836,284 - 37,891,231 (+)NCBI
mRatBN7.21232,175,308 - 32,230,264 (+)NCBI
RefSeq Acc Id: XM_006249301   ⟹   XP_006249363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,835,306 - 37,895,861 (+)NCBI
mRatBN7.21232,175,176 - 32,234,200 (+)NCBI
Rnor_6.01237,593,692 - 37,650,761 (+)NCBI
Rnor_5.01239,464,590 - 39,524,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089440   ⟹   XP_038945368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,835,306 - 37,895,861 (+)NCBI
mRatBN7.21232,175,176 - 32,234,200 (+)NCBI
RefSeq Acc Id: XM_039089441   ⟹   XP_038945369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,835,306 - 37,895,861 (+)NCBI
mRatBN7.21232,175,176 - 32,234,200 (+)NCBI
RefSeq Acc Id: XM_039089442   ⟹   XP_038945370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,835,306 - 37,895,861 (+)NCBI
mRatBN7.21232,175,176 - 32,234,200 (+)NCBI
RefSeq Acc Id: XM_039089443   ⟹   XP_038945371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,835,306 - 37,895,861 (+)NCBI
mRatBN7.21232,175,176 - 32,234,200 (+)NCBI
RefSeq Acc Id: XM_039089444   ⟹   XP_038945372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,846,514 - 37,895,861 (+)NCBI
mRatBN7.21232,185,535 - 32,234,200 (+)NCBI
RefSeq Acc Id: XM_063271301   ⟹   XP_063127371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,841,982 - 37,895,861 (+)NCBI
RefSeq Acc Id: XM_063271302   ⟹   XP_063127372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,841,982 - 37,895,861 (+)NCBI
RefSeq Acc Id: XP_006249363   ⟸   XM_006249301
- Peptide Label: isoform X3
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054711   ⟸   ENSRNOT00000057902
Ensembl Acc Id: ENSRNOP00000072577   ⟸   ENSRNOT00000088006
Ensembl Acc Id: ENSRNOP00000073430   ⟸   ENSRNOT00000088787
RefSeq Acc Id: XP_038945368   ⟸   XM_039089440
- Peptide Label: isoform X1
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945369   ⟸   XM_039089441
- Peptide Label: isoform X2
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945370   ⟸   XM_039089442
- Peptide Label: isoform X4
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945371   ⟸   XM_039089443
- Peptide Label: isoform X5
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376176   ⟸   NM_001389247
- Peptide Label: isoform 1
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   F1LS26 (UniProtKB/TrEMBL),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376177   ⟸   NM_001389248
- Peptide Label: isoform 2
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A8I6ATT9 (UniProtKB/TrEMBL),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945372   ⟸   XM_039089444
- Peptide Label: isoform X6
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000097893   ⟸   ENSRNOT00000102429
RefSeq Acc Id: XP_063127371   ⟸   XM_063271301
- Peptide Label: isoform X1
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127372   ⟸   XM_063271302
- Peptide Label: isoform X2
- UniProtKB: Q5BJL5 (UniProtKB/Swiss-Prot),   A0A0G2K3C0 (UniProtKB/TrEMBL)
Protein Domains
SBNO alpha/beta   Strawberry notch AAA   Strawberry notch helicase C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJL5-F1-model_v2 AlphaFold Q5BJL5 1-1269 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698616
Promoter ID:EPDNEW_R9138
Type:multiple initiation site
Name:Sbno1_1
Description:strawberry notch homolog 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01237,594,180 - 37,594,240EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310005 AgrOrtholog
BioCyc Gene G2FUF-19353 BioCyc
Ensembl Genes ENSRNOG00000001064 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000057902 ENTREZGENE
  ENSRNOT00000102429 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7368012 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  SBNO_Helicase_C_dom UniProtKB/Swiss-Prot
  SNO UniProtKB/Swiss-Prot
  SNO_AAA UniProtKB/Swiss-Prot
MGC_CLONE MGC:109641 IMAGE-MGC_LOAD
NCBI Gene 304470 ENTREZGENE
PANTHER PROTEIN STRAWBERRY NOTCH HOMOLOG 1 UniProtKB/Swiss-Prot
  PTHR12706 UniProtKB/Swiss-Prot
Pfam AAA_34 UniProtKB/Swiss-Prot
  Helicase_C_4 UniProtKB/Swiss-Prot
  SBNO UniProtKB/Swiss-Prot
PhenoGen Sbno1 PhenoGen
RatGTEx ENSRNOG00000001064 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2K3C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K5H7_RAT UniProtKB/TrEMBL
  A0A8I6ATT9 ENTREZGENE, UniProtKB/TrEMBL
  A6J100_RAT UniProtKB/TrEMBL
  A6J101_RAT UniProtKB/TrEMBL
  F1LS26 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJL5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-21 Sbno1  strawberry notch homolog 1  Sbno1  strawberry notch homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Sbno1  strawberry notch homolog 1 (Drosophila)  Sbno1  sno, strawberry notch homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sbno1  sno, strawberry notch homolog 1 (Drosophila)  Sbno1_predicted  sno, strawberry notch homolog 1 (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sbno1_predicted  sno, strawberry notch homolog 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED