Ptgr3 (prostaglandin reductase 3) - Rat Genome Database

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Gene: Ptgr3 (prostaglandin reductase 3) Rattus norvegicus
Analyze
Symbol: Ptgr3
Name: prostaglandin reductase 3
RGD ID: 1309999
Description: Predicted to enable 15-oxoprostaglandin 13-reductase [NAD(P)+] activity. Predicted to be involved in negative regulation of fat cell differentiation. Predicted to be located in peroxisome. Orthologous to human PTGR3 (prostaglandin reductase 3); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291403; Zadh2; zinc binding alcohol dehydrogenase, domain containing 2; zinc-binding alcohol dehydrogenase domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81879,729,282 - 79,738,632 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1879,729,282 - 79,738,632 (+)EnsemblGRCr8
mRatBN7.21877,454,435 - 77,463,785 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1877,454,435 - 77,463,785 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1879,561,463 - 79,570,827 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,233,544 - 80,242,902 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01878,069,184 - 78,078,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01880,939,875 - 80,949,226 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1880,939,875 - 80,949,226 (+)Ensemblrn6Rnor6.0
Rnor_5.01879,987,672 - 79,997,023 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41880,613,957 - 80,623,307 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1876,077,940 - 76,087,290 (+)NCBICelera
RGSC_v3.11880,687,407 - 80,695,298 (+)NCBI
Cytogenetic Map18q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (ISO)
peroxisome  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:19091015   PMID:23821743   PMID:34800366  


Genomics

Comparative Map Data
Ptgr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81879,729,282 - 79,738,632 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1879,729,282 - 79,738,632 (+)EnsemblGRCr8
mRatBN7.21877,454,435 - 77,463,785 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1877,454,435 - 77,463,785 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1879,561,463 - 79,570,827 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,233,544 - 80,242,902 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01878,069,184 - 78,078,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01880,939,875 - 80,949,226 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1880,939,875 - 80,949,226 (+)Ensemblrn6Rnor6.0
Rnor_5.01879,987,672 - 79,997,023 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41880,613,957 - 80,623,307 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1876,077,940 - 76,087,290 (+)NCBICelera
RGSC_v3.11880,687,407 - 80,695,298 (+)NCBI
Cytogenetic Map18q12.3NCBI
PTGR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381875,195,108 - 75,209,139 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1875,195,113 - 75,209,139 (-)Ensemblhg38GRCh38
GRCh371872,907,063 - 72,921,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361871,039,464 - 71,050,105 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341871,039,470 - 71,050,105NCBI
Celera1869,727,946 - 69,739,950 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1869,594,140 - 69,606,087 (-)NCBIHuRef
CHM1_11872,903,933 - 72,915,937 (-)NCBICHM1_1
T2T-CHM13v2.01875,424,502 - 75,438,532 (-)NCBIT2T-CHM13v2.0
Ptgr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,106,250 - 84,115,579 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,106,188 - 84,115,653 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381884,088,126 - 84,097,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,088,063 - 84,097,528 (+)Ensemblmm10GRCm38
MGSCv371884,257,550 - 84,266,906 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361884,222,351 - 84,231,707 (+)NCBIMGSCv36mm8
Celera1885,156,040 - 85,165,162 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
Ptgr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540258,632,530 - 58,642,007 (-)Ensembl
ChiLan1.0NW_00495540258,634,433 - 58,642,498 (-)NCBIChiLan1.0ChiLan1.0
PTGR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21792,740,841 - 92,752,265 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11878,433,095 - 78,444,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01868,584,392 - 68,596,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11871,859,470 - 71,870,915 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1871,859,470 - 71,870,919 (-)EnsemblpanPan2panpan1.1
PTGR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114,303,933 - 4,311,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14,303,922 - 4,311,455 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha15,311,503 - 5,319,250 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.014,115,309 - 4,123,058 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14,115,391 - 4,123,070 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114,153,583 - 4,161,328 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014,106,751 - 4,114,493 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014,277,984 - 4,285,626 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptgr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,106,915 - 18,116,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366163,428,045 - 3,439,945 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366163,428,045 - 3,438,092 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1148,987,518 - 148,997,954 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11148,987,197 - 148,995,138 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21164,776,841 - 164,784,056 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTGR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1184,702,671 - 4,712,792 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl184,702,617 - 4,714,272 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606021,158,258 - 21,170,082 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248065,465,370 - 5,476,260 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248065,465,755 - 5,476,891 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ptgr3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11548,270,956 - 48,278,452 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ptgr3
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:174
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000021729
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185449080186134022Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185782524385493247Rat
634333Pia19Pristane induced arthritis QTL 193.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)187627210481806852Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
70172Eae15Experimental allergic encephalomyelitis QTL 150.001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)187948431184129249Rat
7794793Mcs34Mammary carcinoma susceptibility QTL 341.54mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)186563556785897775Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)186584644786134022Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)186144685386134022Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat

Markers in Region
RH139406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,455,976 - 77,456,127 (+)MAPPERmRatBN7.2
Rnor_6.01880,941,418 - 80,941,568NCBIRnor6.0
Rnor_5.01879,989,215 - 79,989,365UniSTSRnor5.0
RGSC_v3.41880,615,499 - 80,615,649UniSTSRGSC3.4
Celera1876,079,482 - 76,079,632UniSTS
RH 3.4 Map18771.5UniSTS
Cytogenetic Map18q12.3UniSTS
RH128293  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,460,957 - 77,461,175 (+)MAPPERmRatBN7.2
Rnor_6.01880,946,399 - 80,946,616NCBIRnor6.0
Rnor_5.01879,994,196 - 79,994,413UniSTSRnor5.0
RGSC_v3.41880,620,480 - 80,620,697UniSTSRGSC3.4
Celera1876,084,463 - 76,084,680UniSTS
RH 3.4 Map18771.4UniSTS
Cytogenetic Map18q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021729   ⟹   ENSRNOP00000021729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1879,729,282 - 79,738,632 (+)Ensembl
mRatBN7.2 Ensembl1877,454,435 - 77,463,785 (+)Ensembl
Rnor_6.0 Ensembl1880,939,875 - 80,949,226 (+)Ensembl
RefSeq Acc Id: NM_001106129   ⟹   NP_001099599
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81879,729,282 - 79,738,632 (+)NCBI
mRatBN7.21877,454,435 - 77,463,785 (+)NCBI
Rnor_6.01880,939,875 - 80,949,226 (+)NCBI
Rnor_5.01879,987,672 - 79,997,023 (+)NCBI
RGSC_v3.41880,613,957 - 80,623,307 (+)RGD
Celera1876,077,940 - 76,087,290 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099599 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75192 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021729
  ENSRNOP00000021729.7
RefSeq Acc Id: NP_001099599   ⟸   NM_001106129
- UniProtKB: D4A264 (UniProtKB/TrEMBL),   A6K5K8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021729   ⟸   ENSRNOT00000021729
Protein Domains
Enoyl reductase (ER)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A264-F1-model_v2 AlphaFold D4A264 1-377 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309999 AgrOrtholog
BioCyc Gene G2FUF-6752 BioCyc
Ensembl Genes ENSRNOG00000016239 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021729 ENTREZGENE
  ENSRNOT00000021729.8 UniProtKB/TrEMBL
Gene3D-CATH Medium-chain alcohol dehydrogenases, catalytic domain UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro ADH_C UniProtKB/TrEMBL
  ADH_N UniProtKB/TrEMBL
  GroES-like UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  PKS_ER UniProtKB/TrEMBL
  Quin_OxRdtase/zeta-crystal_CS UniProtKB/TrEMBL
  Zn-ADH-like_protein UniProtKB/TrEMBL
KEGG Report rno:291403 UniProtKB/TrEMBL
NCBI Gene 291403 ENTREZGENE
PANTHER PROSTAGLANDIN REDUCTASE 3 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE UniProtKB/TrEMBL
Pfam ADH_N UniProtKB/TrEMBL
  ADH_zinc_N UniProtKB/TrEMBL
PhenoGen Ptgr3 PhenoGen
PROSITE QOR_ZETA_CRYSTAL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016239 RatGTEx
SMART PKS_ER UniProtKB/TrEMBL
Superfamily-SCOP GroES_like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A6K5K8 ENTREZGENE, UniProtKB/TrEMBL
  D4A264 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-10 Ptgr3  prostaglandin reductase 3  Zadh2  zinc binding alcohol dehydrogenase, domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zadh2  zinc binding alcohol dehydrogenase, domain containing 2   Zadh2_predicted  zinc binding alcohol dehydrogenase, domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zadh2_predicted  zinc binding alcohol dehydrogenase, domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED