Rcc2 (regulator of chromosome condensation 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rcc2 (regulator of chromosome condensation 2) Rattus norvegicus
Analyze
Symbol: Rcc2
Name: regulator of chromosome condensation 2
RGD ID: 1309986
Description: Predicted to enable enzyme binding activity; microtubule binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including chromosome passenger complex localization to kinetochore; negative regulation of cell-substrate adhesion; and positive regulation of cell cycle process. Predicted to be located in several cellular components, including chromosome, centromeric core domain; early endosome membrane; and mitotic spindle midzone. Predicted to be active in membrane. Orthologous to human RCC2 (regulator of chromosome condensation 2); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298594; RGD1309986; similar to CG9135-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,277,476 - 158,300,294 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5158,277,476 - 158,300,294 (+)EnsemblGRCr8
mRatBN7.25152,994,406 - 153,017,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5152,993,665 - 153,017,205 (+)EnsemblmRatBN7.2
Rnor_6.05159,220,531 - 159,236,313 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,220,979 - 159,234,320 (+)Ensemblrn6Rnor6.0
Rnor_5.05162,922,502 - 162,943,021 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45159,526,612 - 159,554,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5151,362,318 - 151,378,100 (+)NCBICelera
RGSC_v3.15159,536,799 - 159,565,596 (+)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methylphenidate  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12919680   PMID:19738201   PMID:22658674   PMID:22681889   PMID:25074804   PMID:31505169  


Genomics

Comparative Map Data
Rcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,277,476 - 158,300,294 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5158,277,476 - 158,300,294 (+)EnsemblGRCr8
mRatBN7.25152,994,406 - 153,017,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5152,993,665 - 153,017,205 (+)EnsemblmRatBN7.2
Rnor_6.05159,220,531 - 159,236,313 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,220,979 - 159,234,320 (+)Ensemblrn6Rnor6.0
Rnor_5.05162,922,502 - 162,943,021 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45159,526,612 - 159,554,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5151,362,318 - 151,378,100 (+)NCBICelera
RGSC_v3.15159,536,799 - 159,565,596 (+)NCBI
Cytogenetic Map5q36NCBI
RCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,406,760 - 17,439,677 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,406,755 - 17,439,772 (-)Ensemblhg38GRCh38
GRCh37117,733,256 - 17,766,173 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,605,866 - 17,638,807 (-)NCBIBuild 36Build 36hg18NCBI36
Celera116,058,375 - 16,091,346 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,979,184 - 16,012,475 (-)NCBIHuRef
CHM1_1117,841,584 - 17,874,664 (-)NCBICHM1_1
T2T-CHM13v2.0117,220,707 - 17,253,705 (-)NCBIT2T-CHM13v2.0
Rcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,427,308 - 140,450,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,427,852 - 140,450,531 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384140,701,473 - 140,723,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4140,700,541 - 140,723,220 (+)Ensemblmm10GRCm38
MGSCv374140,257,388 - 140,279,135 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364139,973,618 - 139,993,551 (+)NCBIMGSCv36mm8
Celera4142,511,445 - 142,534,864 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map472.15NCBI
Rcc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,490,179 - 1,509,926 (+)Ensembl
ChiLan1.0NW_0049555271,490,179 - 1,512,111 (+)NCBIChiLan1.0ChiLan1.0
RCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21209,687,331 - 209,720,367 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11208,806,203 - 208,839,233 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,353,770 - 16,386,810 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1117,409,432 - 17,440,769 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl117,409,432 - 17,432,031 (-)EnsemblpanPan2panpan1.1
RCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1280,865,091 - 80,887,819 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl280,869,369 - 80,885,928 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha277,400,956 - 77,425,467 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0281,511,360 - 81,535,816 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,511,357 - 81,534,452 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,264,165 - 78,288,720 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,279,812 - 79,304,315 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,349,698 - 80,374,263 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505838,440,791 - 38,482,501 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364744,265,578 - 4,281,364 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364744,265,572 - 4,307,283 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,988,272 - 76,014,160 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1675,988,271 - 76,014,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2670,334,873 - 70,354,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,139,279 - 115,171,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666033947,462 - 980,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,924,816 - 2,950,472 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247642,924,924 - 2,950,481 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rcc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1117,425,442 - 17,446,918 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rcc2
106 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:45
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000008940
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat

Markers in Region
RH128135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25153,016,933 - 153,017,148 (+)MAPPERmRatBN7.2
Rnor_6.05159,236,024 - 159,236,238NCBIRnor6.0
Rnor_5.05162,942,732 - 162,942,946UniSTSRnor5.0
RGSC_v3.45159,555,976 - 159,556,190UniSTSRGSC3.4
Celera5151,377,811 - 151,378,025UniSTS
RH 3.4 Map51052.4UniSTS
Cytogenetic Map5q36UniSTS
G48116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25152,956,092 - 152,956,885 (+)MAPPERmRatBN7.2
Rnor_6.05159,175,256 - 159,176,048NCBIRnor6.0
Rnor_5.05162,883,177 - 162,883,969UniSTSRnor5.0
RGSC_v3.45159,493,244 - 159,494,036UniSTSRGSC3.4
Celera5151,317,026 - 151,317,818UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008940   ⟹   ENSRNOP00000008940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5158,277,476 - 158,300,294 (+)Ensembl
mRatBN7.2 Ensembl5152,993,665 - 153,017,205 (+)Ensembl
Rnor_6.0 Ensembl5159,220,979 - 159,234,320 (+)Ensembl
RefSeq Acc Id: NM_001427820   ⟹   NP_001414749
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,277,476 - 158,300,294 (+)NCBI
RefSeq Acc Id: XM_039111332   ⟹   XP_038967260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,277,943 - 158,300,294 (+)NCBI
mRatBN7.25152,994,867 - 153,017,223 (+)NCBI
RefSeq Acc Id: XM_039111333   ⟹   XP_038967261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,278,699 - 158,300,294 (+)NCBI
mRatBN7.25152,995,628 - 153,017,223 (+)NCBI
Ensembl Acc Id: ENSRNOP00000008940   ⟸   ENSRNOT00000008940
RefSeq Acc Id: XP_038967260   ⟸   XM_039111332
- Peptide Label: isoform X1
- UniProtKB: F1LVV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967261   ⟸   XM_039111333
- Peptide Label: isoform X1
- UniProtKB: F1LVV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414749   ⟸   NM_001427820
- UniProtKB: F1LVV4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVV4-F1-model_v2 AlphaFold F1LVV4 1-427 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309986 AgrOrtholog
BioCyc Gene G2FUF-39390 BioCyc
Ensembl Genes ENSRNOG00000006327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008940 ENTREZGENE
  ENSRNOT00000008940.8 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.30 UniProtKB/TrEMBL
InterPro RCC2 UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
  Reg_csome_cond/b-lactamase_inh UniProtKB/TrEMBL
NCBI Gene 298594 ENTREZGENE
PANTHER PROTEIN RCC2 UniProtKB/TrEMBL
  PTHR46207 UniProtKB/TrEMBL
Pfam WD40_RLD UniProtKB/TrEMBL
PhenoGen Rcc2 PhenoGen
PRINTS RCCNDNSATION UniProtKB/TrEMBL
PROSITE RCC1_2 UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006327 RatGTEx
Superfamily-SCOP RCC1/BLIP-II UniProtKB/TrEMBL
UniProt F1LVV4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rcc2  regulator of chromosome condensation 2   Rcc2_predicted  regulator of chromosome condensation 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Rcc2_predicted  regulator of chromosome condensation 2 (predicted)  RGD1309986_predicted  similar to CG9135-PA (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309986_predicted  similar to CG9135-PA (predicted)  LOC298594_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298594_predicted  similar to CG9135-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL