Hnrnpdl (heterogeneous nuclear ribonucleoprotein D-like) - Rat Genome Database

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Gene: Hnrnpdl (heterogeneous nuclear ribonucleoprotein D-like) Rattus norvegicus
Analyze
Symbol: Hnrnpdl
Name: heterogeneous nuclear ribonucleoprotein D-like
RGD ID: 1309950
Description: Predicted to enable DNA binding activity and poly-purine tract binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in nucleus. Predicted to be active in chromatin; nucleoplasm; and synapse. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hnRNP D-like; hnRNP DL; hnRNP-DL; hnRPD-like protein; Hnrpdl; LOC305178; MGC125262
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,861,716 - 9,867,945 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,861,716 - 9,867,945 (+)EnsemblGRCr8
mRatBN7.2149,557,430 - 9,563,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,557,425 - 9,562,506 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx149,529,706 - 9,535,937 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,829,545 - 10,835,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,526,156 - 9,532,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01411,199,114 - 11,204,670 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1411,198,896 - 11,202,669 (+)Ensemblrn6Rnor6.0
Rnor_5.01411,142,952 - 11,148,504 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41410,861,054 - 10,864,322 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera149,659,535 - 9,662,803 (+)NCBICelera
RGSC_v3.11410,860,747 - 10,865,255 (+)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diallyl trisulfide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diquat  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
lovastatin  (ISO)
Mesaconitine  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nitroprusside  (ISO)
ouabain  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
cytoplasm  (IEA)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9538234   PMID:10717477   PMID:12477932   PMID:22658674   PMID:22681889   PMID:23376485   PMID:25931508   PMID:26316108   PMID:28131823   PMID:29476059   PMID:35352799  


Genomics

Comparative Map Data
Hnrnpdl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,861,716 - 9,867,945 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,861,716 - 9,867,945 (+)EnsemblGRCr8
mRatBN7.2149,557,430 - 9,563,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,557,425 - 9,562,506 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx149,529,706 - 9,535,937 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,829,545 - 10,835,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,526,156 - 9,532,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01411,199,114 - 11,204,670 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1411,198,896 - 11,202,669 (+)Ensemblrn6Rnor6.0
Rnor_5.01411,142,952 - 11,148,504 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41410,861,054 - 10,864,322 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera149,659,535 - 9,662,803 (+)NCBICelera
RGSC_v3.11410,860,747 - 10,865,255 (+)NCBI
Cytogenetic Map14p22NCBI
HNRNPDL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38482,422,564 - 82,430,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl482,422,565 - 82,430,471 (-)Ensemblhg38GRCh38
GRCh37483,343,717 - 83,351,615 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36483,563,371 - 83,570,402 (-)NCBIBuild 36Build 36hg18NCBI36
Celera480,635,634 - 80,642,665 (-)NCBICelera
Cytogenetic Map4q21.22NCBI
HuRef479,085,093 - 79,092,735 (-)NCBIHuRef
CHM1_1483,320,226 - 83,327,863 (-)NCBICHM1_1
T2T-CHM13v2.0485,752,194 - 85,760,070 (-)NCBIT2T-CHM13v2.0
Hnrnpdl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,181,436 - 100,187,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,181,436 - 100,187,523 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385100,033,577 - 100,039,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,033,577 - 100,039,664 (-)Ensemblmm10GRCm38
MGSCv375100,462,596 - 100,468,241 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365100,275,023 - 100,279,179 (-)NCBIMGSCv36mm8
Celera597,347,081 - 97,352,727 (-)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.46NCBI
Hnrnpdl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554336,512,399 - 6,522,377 (-)Ensembl
ChiLan1.0NW_0049554336,515,509 - 6,522,081 (-)NCBIChiLan1.0ChiLan1.0
HNRNPDL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2347,639,267 - 47,644,974 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1447,828,297 - 47,834,148 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0441,771,512 - 41,777,135 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1447,621,973 - 47,628,893 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl447,621,973 - 47,628,885 (+)EnsemblpanPan2panpan1.1
HNRNPDL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,401,266 - 6,408,006 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,402,762 - 6,407,845 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3235,473,221 - 35,479,998 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0326,424,627 - 6,431,432 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl326,424,627 - 6,432,733 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1326,496,916 - 6,503,771 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0326,361,500 - 6,368,282 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03233,594,663 - 33,601,440 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hnrnpdl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,901,016 - 5,906,269 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367382,062,902 - 2,114,052 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367382,063,109 - 2,068,099 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPDL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,802,896 - 135,809,862 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18135,802,530 - 135,809,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28145,172,725 - 145,177,162 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPDL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1730,804,807 - 30,810,539 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl730,805,749 - 30,810,720 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660379,364,619 - 9,371,333 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpdl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247578,488,365 - 8,495,822 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247578,488,619 - 8,495,498 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hnrnpdl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11110,280,500 - 10,286,035 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hnrnpdl
63 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:34
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000003106
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14111334906Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat

Markers in Region
RH143237  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr899,040,517 - 9,040,766 (+)Marker Load Pipeline
mRatBN7.298,713,319 - 8,713,568 (+)MAPPERmRatBN7.2
Rnor_6.096,475,551 - 6,475,799NCBIRnor6.0
Rnor_5.095,522,043 - 5,522,291UniSTSRnor5.0
Celera94,513,889 - 4,514,137UniSTS
Cytogenetic Map14p22UniSTS
HNRPDL  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2149,559,632 - 9,561,097 (+)MAPPERmRatBN7.2
Rnor_6.01411,200,654 - 11,202,118NCBIRnor6.0
Rnor_5.01411,144,489 - 11,145,953UniSTSRnor5.0
RGSC_v3.41410,862,304 - 10,863,768UniSTSRGSC3.4
Celera149,660,785 - 9,662,249UniSTS
Cytogenetic Map14p22UniSTS
HNRPDL  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2149,558,467 - 9,559,570 (+)MAPPERmRatBN7.2
Rnor_6.01411,199,489 - 11,200,591NCBIRnor6.0
Rnor_5.01411,143,324 - 11,144,426UniSTSRnor5.0
RGSC_v3.41410,861,139 - 10,862,241UniSTSRGSC3.4
Celera149,659,620 - 9,660,722UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_174877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_359349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003106   ⟹   ENSRNOP00000003106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,862,654 - 9,866,791 (+)Ensembl
mRatBN7.2 Ensembl149,558,368 - 9,562,506 (+)Ensembl
Rnor_6.0 Ensembl1411,199,404 - 11,202,669 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079767   ⟹   ENSRNOP00000075589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,861,716 - 9,867,945 (+)Ensembl
mRatBN7.2 Ensembl149,557,425 - 9,562,501 (+)Ensembl
Rnor_6.0 Ensembl1411,198,896 - 11,202,325 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107079   ⟹   ENSRNOP00000079740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,862,654 - 9,866,791 (+)Ensembl
mRatBN7.2 Ensembl149,557,425 - 9,562,501 (+)Ensembl
RefSeq Acc Id: NM_001033696   ⟹   NP_001028868
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,654 - 9,865,937 (+)NCBI
mRatBN7.2149,558,368 - 9,561,651 (+)NCBI
Rnor_6.01411,199,404 - 11,202,672 (+)NCBI
Rnor_5.01411,142,952 - 11,148,504 (+)NCBI
RGSC_v3.41410,861,054 - 10,864,322 (+)RGD
Celera149,659,535 - 9,662,803 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401448   ⟹   NP_001388377
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,654 - 9,867,945 (+)NCBI
mRatBN7.2149,558,368 - 9,563,659 (+)NCBI
RefSeq Acc Id: NM_001401449   ⟹   NP_001388378
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,861,716 - 9,867,945 (+)NCBI
mRatBN7.2149,557,430 - 9,563,659 (+)NCBI
RefSeq Acc Id: NM_001401450   ⟹   NP_001388379
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,861,716 - 9,867,945 (+)NCBI
mRatBN7.2149,557,430 - 9,563,659 (+)NCBI
RefSeq Acc Id: NM_001401451   ⟹   NP_001388380
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,861,716 - 9,867,945 (+)NCBI
mRatBN7.2149,557,430 - 9,563,659 (+)NCBI
RefSeq Acc Id: NR_174877
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,861,716 - 9,867,945 (+)NCBI
mRatBN7.2149,557,430 - 9,563,659 (+)NCBI
RefSeq Acc Id: XM_063273051   ⟹   XP_063129121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,402 - 9,867,940 (+)NCBI
RefSeq Acc Id: XM_063273052   ⟹   XP_063129122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,653 - 9,867,940 (+)NCBI
RefSeq Acc Id: XR_005492930
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,402 - 9,867,940 (+)NCBI
mRatBN7.2149,558,079 - 9,563,654 (+)NCBI
RefSeq Acc Id: XR_010057363
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,639 - 9,867,940 (+)NCBI
RefSeq Acc Id: XR_359349
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,862,402 - 9,867,940 (+)NCBI
mRatBN7.2149,558,079 - 9,563,654 (+)NCBI
Rnor_6.01411,199,114 - 11,204,670 (+)NCBI
Rnor_5.01411,142,952 - 11,148,504 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001028868   ⟸   NM_001033696
- Peptide Label: isoform 1
- UniProtKB: Q3SWU3 (UniProtKB/Swiss-Prot),   A6K617 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075589   ⟸   ENSRNOT00000079767
Ensembl Acc Id: ENSRNOP00000003106   ⟸   ENSRNOT00000003106
Ensembl Acc Id: ENSRNOP00000079740   ⟸   ENSRNOT00000107079
RefSeq Acc Id: NP_001388380   ⟸   NM_001401451
- Peptide Label: isoform 2
- UniProtKB: A0A0G2KAZ7 (UniProtKB/TrEMBL),   A0A8I6G5P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388379   ⟸   NM_001401450
- Peptide Label: isoform 2
- UniProtKB: A0A0G2KAZ7 (UniProtKB/TrEMBL),   A0A8I6G5P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388378   ⟸   NM_001401449
- Peptide Label: isoform 2
- UniProtKB: A0A0G2KAZ7 (UniProtKB/TrEMBL),   A0A8I6G5P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388377   ⟸   NM_001401448
- Peptide Label: isoform 1
- UniProtKB: Q3SWU3 (UniProtKB/Swiss-Prot),   A6K617 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129121   ⟸   XM_063273051
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129122   ⟸   XM_063273052
- Peptide Label: isoform X2
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3SWU3-F1-model_v2 AlphaFold Q3SWU3 1-322 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699198
Promoter ID:EPDNEW_R9722
Type:single initiation site
Name:Hnrnpdl_1
Description:heterogeneous nuclear ribonucleoprotein D-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01411,199,389 - 11,199,449EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309950 AgrOrtholog
BioCyc Gene G2FUF-16389 BioCyc
Ensembl Genes ENSRNOG00000002270 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003106 ENTREZGENE
  ENSRNOT00000003106.7 UniProtKB/Swiss-Prot
  ENSRNOT00000079767 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7461444 IMAGE-MGC_LOAD
InterPro hnRPDL_RRM1 UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:305178 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125262 IMAGE-MGC_LOAD
NCBI Gene 305178 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D-LIKE UniProtKB/Swiss-Prot
  RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Hnrnpdl PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002270 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A0G2KAZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5P1 ENTREZGENE, UniProtKB/TrEMBL
  A6K617 ENTREZGENE, UniProtKB/TrEMBL
  HNRDL_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-01 Hnrnpdl  heterogeneous nuclear ribonucleoprotein D-like  Hnrpdl  heterogeneous nuclear ribonucleoprotein D-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Hnrpdl  heterogeneous nuclear ribonucleoprotein D-like  Hnrpdl_predicted  heterogeneous nuclear ribonucleoprotein D-like (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Hnrpdl_predicted  heterogeneous nuclear ribonucleoprotein D-like (predicted)      Symbol and Name status set to approved 70820 APPROVED