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Gene: Spats2l (spermatogenesis associated, serine-rich 2-like) Rattus norvegicus

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Symbol:

Spats2l

Name:

spermatogenesis associated, serine-rich 2-like

RGD ID:

1309930

Description:

Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Orthologous to human SPATS2L (spermatogenesis associated serine rich 2 like); INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC316426; RGD1309930; similar to 2810022L02Rik protein; SPATS2-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	66,814,217 - 66,988,084 (+)	NCBI		GRCr8
mRatBN7.2	9	59,319,949 - 59,493,864 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	59,320,276 - 59,493,967 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	67,895,228 - 67,993,937 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,011,133 - 73,109,850 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	71,329,242 - 71,427,953 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	64,643,223 - 64,843,963 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	64,643,281 - 64,843,960 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	64,442,918 - 64,641,803 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	56,584,578 - 56,607,773 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	56,841,343 - 56,939,933 (+)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spats2l	Rat	COVID-19		ISO	SPATS2L (Homo sapiens)	9068941	mRNA:increased expression:peripheral blood mononuclear cell (human)	RGD	PMID:32228226 and REF_RGD_ID:28912744

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spats2l	Rat	Neurodevelopmental Disorders		ISO	SPATS2L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Spats2l	Rat	Pulmonary Arterial Hypertension		ISO	SPATS2L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pulmonary arterial hypertension	ClinVar	PMID:32581362

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spats2l	Rat	atrial fibrillation		ISO	SPATS2L (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:29892015 and PMID:30061737

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spats2l	Rat	1,1-dichloroethene	decreases expression	ISO	Spats2l (Mus musculus)	6480464	vinylidene chloride results in decreased expression of SPATS2L mRNA	CTD	PMID:26682919
Spats2l	Rat	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in increased expression of SPATS2L mRNA	CTD	PMID:27840820
Spats2l	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SPATS2L mRNA	CTD	PMID:22206623
Spats2l	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Spats2l (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of SPATS2L mRNA	CTD	PMID:22206623
Spats2l	Rat	17beta-estradiol	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Estradiol results in increased expression of SPATS2L mRNA	CTD	PMID:18556351 more ...
Spats2l	Rat	17beta-estradiol	decreases expression	ISO	Spats2l (Mus musculus)	6480464	Estradiol results in decreased expression of SPATS2L mRNA	CTD	PMID:39298647
Spats2l	Rat	17beta-estradiol	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	[Estradiol co-treated with Progesterone] results in increased expression of SPATS2L mRNA	CTD	PMID:18556351
Spats2l	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to SPATS2L promoter]	CTD	PMID:19654925
Spats2l	Rat	2,6-dimethoxyphenol	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[Sodium Chloride co-treated with pyrogallol 1 more ...	CTD	PMID:38598786
Spats2l	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Spats2l (Mus musculus)	6480464	bisphenol S results in decreased expression of SPATS2L mRNA	CTD	PMID:39298647
Spats2l	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Spats2l (Mus musculus)	6480464	bisphenol S results in increased expression of SPATS2L mRNA	CTD	PMID:33297965
Spats2l	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of SPATS2L mRNA	CTD	PMID:24780913
Spats2l	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of SPATS2L mRNA	CTD	PMID:31881176
Spats2l	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of SPATS2L mRNA	CTD	PMID:28959563
Spats2l	Rat	acrylamide	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Acrylamide results in increased expression of SPATS2L mRNA	CTD	PMID:32763439
Spats2l	Rat	aflatoxin B1	decreases methylation	ISO	SPATS2L (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of SPATS2L gene	CTD	PMID:27153756
Spats2l	Rat	all-trans-retinoic acid	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Tretinoin results in increased expression of SPATS2L mRNA	CTD	PMID:21934132 more ...
Spats2l	Rat	antirheumatic drug	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of SPATS2L mRNA	CTD	PMID:24449571
Spats2l	Rat	aristolochic acid A	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of SPATS2L mRNA and aristolochic acid I results in decreased expression of SPATS2L protein	CTD	PMID:33212167
Spats2l	Rat	benzo[a]pyrene	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of SPATS2L protein	CTD	PMID:32717239
Spats2l	Rat	benzo[a]pyrene	affects methylation	ISO	SPATS2L (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SPATS2L 5' UTR	CTD	PMID:27901495
Spats2l	Rat	benzo[a]pyrene	increases methylation	ISO	SPATS2L (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of SPATS2L 3' UTR	CTD	PMID:27901495
Spats2l	Rat	beta-lapachone	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	beta-lapachone results in increased expression of SPATS2L mRNA	CTD	PMID:38218311
Spats2l	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of SPATS2L mRNA	CTD	PMID:25181051
Spats2l	Rat	bisphenol A	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	bisphenol A results in decreased expression of SPATS2L protein	CTD	PMID:37567409
Spats2l	Rat	bisphenol A	decreases methylation	ISO	SPATS2L (Homo sapiens)	6480464	bisphenol A results in decreased methylation of SPATS2L gene	CTD	PMID:31601247
Spats2l	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SPATS2L mRNA	CTD	PMID:30816183 and PMID:32528016
Spats2l	Rat	bisphenol AF	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	bisphenol AF results in increased expression of SPATS2L protein	CTD	PMID:34186270
Spats2l	Rat	cadmium atom	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SPATS2L mRNA	CTD	PMID:35301059
Spats2l	Rat	cadmium dichloride	increases methylation	EXP		6480464	Cadmium Chloride results in increased methylation of SPATS2L promoter	CTD	PMID:22457795
Spats2l	Rat	cadmium dichloride	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SPATS2L mRNA	CTD	PMID:35301059
Spats2l	Rat	caffeine	affects phosphorylation	ISO	SPATS2L (Homo sapiens)	6480464	Caffeine affects the phosphorylation of SPATS2L protein	CTD	PMID:35688186
Spats2l	Rat	carbamazepine	affects expression	ISO	SPATS2L (Homo sapiens)	6480464	Carbamazepine affects the expression of SPATS2L mRNA	CTD	PMID:25979313
Spats2l	Rat	carbon nanotube	affects expression	ISO	Spats2l (Mus musculus)	6480464	Nanotubes and Carbon affects the expression of SPATS2L mRNA	CTD	PMID:25554681
Spats2l	Rat	CGP 52608	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to SPATS2L gene]	CTD	PMID:28238834
Spats2l	Rat	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of SPATS2L mRNA	CTD	PMID:24386269
Spats2l	Rat	cobalt dichloride	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of SPATS2L mRNA	CTD	PMID:19320972
Spats2l	Rat	cocaine	increases expression	EXP		6480464	Cocaine results in increased expression of SPATS2L mRNA	CTD	PMID:17898221
Spats2l	Rat	copper(II) sulfate	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Copper Sulfate results in increased expression of SPATS2L mRNA	CTD	PMID:19549813
Spats2l	Rat	cyclosporin A	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Cyclosporine results in decreased expression of SPATS2L mRNA	CTD	PMID:27989131
Spats2l	Rat	dibutyl phthalate	decreases expression	ISO	Spats2l (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of SPATS2L mRNA	CTD	PMID:21266533
Spats2l	Rat	dibutyl phthalate	decreases expression	EXP		6480464	Dibutyl Phthalate results in decreased expression of SPATS2L mRNA	CTD	PMID:21266533
Spats2l	Rat	dioxygen	multiple interactions	EXP		6480464	[Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression of SPATS2L mRNA	CTD	PMID:33729688
Spats2l	Rat	diquat	decreases expression	ISO	Spats2l (Mus musculus)	6480464	Diquat results in decreased expression of SPATS2L mRNA	CTD	PMID:36851058
Spats2l	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of SPATS2L mRNA	CTD	PMID:25152437
Spats2l	Rat	dorsomorphin	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of SPATS2L mRNA	CTD	PMID:27188386
Spats2l	Rat	doxorubicin	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Doxorubicin results in decreased expression of SPATS2L mRNA	CTD	PMID:29803840
Spats2l	Rat	ethyl methanesulfonate	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Ethyl Methanesulfonate results in decreased expression of SPATS2L mRNA	CTD	PMID:23649840
Spats2l	Rat	folic acid	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SPATS2L mRNA	CTD	PMID:22206623
Spats2l	Rat	formaldehyde	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Formaldehyde results in decreased expression of SPATS2L mRNA	CTD	PMID:23649840
Spats2l	Rat	furfural	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[Sodium Chloride co-treated with Furaldehyde] results in increased expression of and affects the localization of SPATS2L protein	CTD	PMID:38598786
Spats2l	Rat	gallic acid	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Gallic Acid results in decreased expression of SPATS2L mRNA	CTD	PMID:34408198
Spats2l	Rat	genistein	increases expression	EXP		6480464	Genistein results in increased expression of SPATS2L protein	CTD	PMID:24552547
Spats2l	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of SPATS2L mRNA	CTD	PMID:33387578
Spats2l	Rat	isobutanol	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[[Gasoline co-treated with isobutyl alcohol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in increased expression of SPATS2L mRNA	CTD	PMID:29432896
Spats2l	Rat	ivermectin	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Ivermectin results in decreased expression of SPATS2L protein	CTD	PMID:32959892
Spats2l	Rat	lead(0)	affects splicing	ISO	SPATS2L (Homo sapiens)	6480464	Lead affects the splicing of SPATS2L mRNA	CTD	PMID:28903495
Spats2l	Rat	leflunomide	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	leflunomide results in increased expression of SPATS2L mRNA	CTD	PMID:28988120
Spats2l	Rat	methotrexate	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Methotrexate results in increased expression of SPATS2L mRNA	CTD	PMID:24449571
Spats2l	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of SPATS2L gene	CTD	PMID:35440735
Spats2l	Rat	methyl methanesulfonate	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of SPATS2L mRNA	CTD	PMID:23649840
Spats2l	Rat	ochratoxin A	increases expression	EXP		6480464	ochratoxin A results in increased expression of SPATS2L mRNA	CTD	PMID:22124623
Spats2l	Rat	ochratoxin A	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	ochratoxin A results in increased expression of SPATS2L mRNA	CTD	PMID:22124623
Spats2l	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of SPATS2L mRNA	CTD	PMID:25729387
Spats2l	Rat	paracetamol	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Acetaminophen results in increased expression of SPATS2L mRNA	CTD	PMID:21420995 and PMID:26690555
Spats2l	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of SPATS2L mRNA	CTD	PMID:33387578
Spats2l	Rat	phenylmercury acetate	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Phenylmercuric Acetate results in increased expression of SPATS2L mRNA	CTD	PMID:26272509
Spats2l	Rat	phenylmercury acetate	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of SPATS2L mRNA	CTD	PMID:27188386
Spats2l	Rat	pirinixic acid	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of SPATS2L mRNA	CTD	PMID:19710929
Spats2l	Rat	pirinixic acid	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of SPATS2L mRNA	CTD	PMID:19710929
Spats2l	Rat	potassium dichromate	decreases expression	ISO	Spats2l (Mus musculus)	6480464	Potassium Dichromate results in decreased expression of SPATS2L mRNA	CTD	PMID:23608068
Spats2l	Rat	progesterone	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	[Estradiol co-treated with Progesterone] results in increased expression of SPATS2L mRNA	CTD	PMID:18556351
Spats2l	Rat	Salinomycin	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	salinomycin results in decreased expression of SPATS2L mRNA	CTD	PMID:19682730
Spats2l	Rat	SB 431542	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[LDN 193189 co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386 and PMID:37664457
Spats2l	Rat	sodium arsenite	affects localization	ISO	SPATS2L (Homo sapiens)	6480464	sodium arsenite affects the localization of SPATS2L protein	CTD	PMID:19005571
Spats2l	Rat	sodium arsenite	decreases expression	ISO	Spats2l (Mus musculus)	6480464	sodium arsenite results in decreased expression of SPATS2L mRNA	CTD	PMID:37682722
Spats2l	Rat	sodium arsenite	increases activity	ISO	SPATS2L (Homo sapiens)	6480464	sodium arsenite results in increased activity of SPATS2L protein	CTD	PMID:30528433
Spats2l	Rat	sodium arsenite	affects response to substance	ISO	SPATS2L (Homo sapiens)	6480464	SPATS2L protein affects the susceptibility to sodium arsenite	CTD	PMID:19005571
Spats2l	Rat	sodium arsenite	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	sodium arsenite results in increased expression of SPATS2L mRNA	CTD	PMID:20020861
Spats2l	Rat	sodium chloride	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[Sodium Chloride co-treated with Furaldehyde] results in increased expression of and affects the localization of SPATS2L protein more ...	CTD	PMID:38598786
Spats2l	Rat	sodium dichromate	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	sodium bichromate results in decreased expression of SPATS2L mRNA	CTD	PMID:17685462
Spats2l	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of SPATS2L mRNA	CTD	PMID:19281266
Spats2l	Rat	sotorasib	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of SPATS2L mRNA	CTD	PMID:36139627
Spats2l	Rat	sunitinib	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Sunitinib results in increased expression of SPATS2L mRNA	CTD	PMID:31533062
Spats2l	Rat	theophylline	decreases expression	ISO	SPATS2L (Homo sapiens)	6480464	Theophylline results in decreased expression of SPATS2L mRNA	CTD	PMID:18951874
Spats2l	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of SPATS2L mRNA	CTD	PMID:34492290
Spats2l	Rat	thiram	increases expression	ISO	SPATS2L (Homo sapiens)	6480464	Thiram results in increased expression of SPATS2L mRNA	CTD	PMID:38568856
Spats2l	Rat	titanium dioxide	increases expression	ISO	Spats2l (Mus musculus)	6480464	titanium dioxide results in increased expression of SPATS2L mRNA	CTD	PMID:23557971
Spats2l	Rat	titanium dioxide	decreases methylation	ISO	Spats2l (Mus musculus)	6480464	titanium dioxide results in decreased methylation of SPATS2L promoter	CTD	PMID:35295148
Spats2l	Rat	toluene	decreases expression	EXP		6480464	Toluene results in decreased expression of SPATS2L mRNA	CTD	PMID:22967744
Spats2l	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of SPATS2L mRNA	CTD	PMID:25729387
Spats2l	Rat	topotecan	increases expression	EXP		6480464	Topotecan results in increased expression of SPATS2L mRNA	CTD	PMID:25729387
Spats2l	Rat	trametinib	multiple interactions	ISO	SPATS2L (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of SPATS2L mRNA	CTD	PMID:36139627
Spats2l	Rat	trimellitic anhydride	decreases expression	ISO	Spats2l (Mus musculus)	6480464	trimellitic anhydride results in decreased expression of SPATS2L mRNA	CTD	PMID:19042947
Spats2l	Rat	valproic acid	decreases methylation	ISO	SPATS2L (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of SPATS2L gene	CTD	PMID:29154799
Spats2l	Rat	valproic acid	affects expression	ISO	SPATS2L (Homo sapiens)	6480464	Valproic Acid affects the expression of SPATS2L mRNA	CTD	PMID:25979313
Spats2l	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of SPATS2L mRNA	CTD	PMID:23034163
Spats2l	Rat	XL147	multiple interactions	ISO	Spats2l (Mus musculus)	6480464	XL147 inhibits the reaction [N-nitroso-tris-chloroethylurea results in increased expression of SPATS2L mRNA]	CTD	PMID:29891994

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spats2l	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Spats2l	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Spats2l	Rat	cytoplasm	is_active_in	IBA	MGI:1919822 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Spats2l	Rat	cytosol	located_in	ISO	SPATS2L (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Spats2l	Rat	cytosol	located_in	IEA	UniProtKB:Q9NUQ6 and ensembl:ENSP00000386730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Spats2l	Rat	nucleolus	located_in	IEA	UniProtKB:Q9NUQ6 and ensembl:ENSP00000386730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Spats2l	Rat	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Spats2l	Rat	nucleolus	located_in	ISO	SPATS2L (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Spats2l	Rat	nucleoplasm	located_in	ISO	SPATS2L (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Spats2l	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q9NUQ6 and ensembl:ENSP00000386730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Spats2l	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Spats2l	Rat	protein-containing complex	part_of	IEA	UniProtKB:Q9NUQ6 and ensembl:ENSP00000386730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Spats2l	Rat	protein-containing complex	part_of	ISO	SPATS2L (Homo sapiens)	1624291		RGD	GO_REF:0000054

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:22658674	PMID:22681889	PMID:30361391

Spats2l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	66,814,217 - 66,988,084 (+)	NCBI		GRCr8
mRatBN7.2	9	59,319,949 - 59,493,864 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	59,320,276 - 59,493,967 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	67,895,228 - 67,993,937 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,011,133 - 73,109,850 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	71,329,242 - 71,427,953 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	64,643,223 - 64,843,963 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	64,643,281 - 64,843,960 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	64,442,918 - 64,641,803 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	56,584,578 - 56,607,773 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	56,841,343 - 56,939,933 (+)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

SPATS2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	200,305,879 - 200,482,264 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	200,305,881 - 200,482,264 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	201,170,602 - 201,346,987 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	200,878,849 - 201,055,231 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	194,925,314 - 195,101,826 (+)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	193,023,113 - 193,199,377 (+)	NCBI		HuRef
CHM1_1	2	201,176,660 - 201,352,970 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	200,789,476 - 200,965,756 (+)	NCBI		T2T-CHM13v2.0

Spats2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	57,813,261 - 57,987,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	57,813,321 - 57,987,553 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	57,774,102 - 57,948,398 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	57,774,162 - 57,948,394 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	57,831,705 - 58,005,241 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	57,719,474 - 57,892,940 (+)	NCBI		MGSCv36	mm8
Celera	1	58,288,869 - 58,462,213 (+)	NCBI		Celera
Cytogenetic Map	1	C1.3	NCBI
cM Map	1	28.85	NCBI

Spats2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	930,622 - 1,013,777 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	930,622 - 1,085,906 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATS2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	102,927,981 - 103,101,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	102,943,003 - 103,116,292 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	87,558,298 - 87,735,646 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	205,717,033 - 205,889,626 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	205,800,294 - 205,889,626 (+)	Ensembl	panpan1.1		panPan2

SPATS2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	9,403,557 - 9,564,466 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	9,407,101 - 9,586,913 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	10,290,333 - 10,451,092 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	9,302,927 - 9,463,742 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	9,302,462 - 9,463,742 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	9,291,451 - 9,451,900 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	9,263,345 - 9,424,308 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	9,261,759 - 9,422,544 (+)	NCBI		UU_Cfam_GSD_1.0

Spats2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	157,436,486 - 157,603,590 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936825	423,984 - 591,495 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936825	423,986 - 591,062 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATS2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	103,879,356 - 104,060,524 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	103,879,416 - 104,060,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	115,151,331 - 115,332,519 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATS2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	85,804,609 - 85,975,998 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	85,807,818 - 85,976,099 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	113,463,647 - 113,635,234 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spats2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624889	596,024 - 716,310 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624889	596,019 - 737,072 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Spats2l
978 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	192
Count of miRNA genes:	116
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000021527
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021527 ⟹ ENSRNOP00000021527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	59,320,276 - 59,493,967 (+)	Ensembl
Rnor_6.0 Ensembl	9	64,745,051 - 64,843,960 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081497 ⟹ ENSRNOP00000069610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	59,426,375 - 59,493,863 (+)	Ensembl
Rnor_6.0 Ensembl	9	64,643,281 - 64,843,928 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100381 ⟹ ENSRNOP00000077000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	59,320,276 - 59,493,967 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103936 ⟹ ENSRNOP00000077858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	59,320,276 - 59,493,863 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104709 ⟹ ENSRNOP00000081101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	59,322,674 - 59,493,861 (+)	Ensembl

RefSeq Acc Id:

NM_001014102 ⟹ NP_001014124

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,889,148 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,394,928 - 59,493,864 (+)	NCBI
Rnor_6.0	9	64,745,051 - 64,843,961 (+)	NCBI
Rnor_5.0	9	64,442,918 - 64,641,803 (+)	NCBI
RGSC_v3.4	9	56,584,578 - 56,607,773 (+)	RGD
Celera	9	56,841,343 - 56,939,933 (+)	RGD

Sequence:

show sequence

CATCCCTTTCAGTAGAGGAGGCCCTCTCAGGTCTGCGTGTCTGAGGCCACTAGTCCAGTGCTGATTATTCAGACACACCCAAGATCCTACCACTACTCCAGTTCCTGGCTCCACCTCGTCAGTACTGC
GGTGACTTACTGGTCACAGTCAACAAAAGTTGATAAAGGTGGCCCTTGGGAGATTGGAATTGACTGTTGGGCTGCTGAGGAGGAAGCAAGTAGCTGGAACAGTCTATGCCTGACAGCCCGAAGCGGAA
CACCAAGAGACCTTGAGAGGCTTATACCCCTAGAAGGAAGATGGCTGAACTCAACACTCATGTGAATGTCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACAAAAGCAATAATGAAATTG
TCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTTTGTGGACGGCAGTGCTATTCAGGTTCTTAAAGAATGGAGCATGACGGGGAAAAAGAAGAATAACAAAAGAAAAAGA
AGCAAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGGGGAGAGGCCGGAGGTGGGGCCCCTGCAGCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCTGTGAAAAGGACAG
CTCATCCCCTGACTCTGCCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCAATACTGGAGGAACCACCAAGGGCTCAGCGTGGGATCACAGAAGGCAGCAGACTACTGCAGCAGAAAA
TGTCCTTAGATGGGAACCCCAAAGCTATTCATGGACCATCAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGGGCAGCCTTGTAACCCAAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAAT
GCCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGGCAAAGAAAAGAGGTCCAAATATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTTCTCTGACGAGATACCGAGTCATGATCAA
GGAAGAGGTGGACAGTTCTGTGAAGAAGATCAAAGCAGCTTTTGCTGAGCTACACAACTGCATCATTGACAAAGAAGTTTCACTGATGGCAGAGATGGATAAAGTTAAAGAAGAAGCCATGGACATCC
TGACTGCCCGTCAGAAGAAGGCAGAGGAGCTGAAGCGACTGACTGATCTAGCCAGTCAAATGGCAGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAATATGAT
GAAGAGCTAGGGAAAGCCGCCCGCTTCTCCTGCGACATTGAACAGCTGAAAGCCCAAATCCTGATCTGCGGAGAAATCACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGTT
GCCTCTGCTGAACACTCATGCGGTAGCTTCCGGGAAGCAGGGGAATTTTTCCCGGAAGTCATCCGGTCACAACAAGCCCAATGAGGGGAAAGCAGCGAACCCCAAAATGGTGAGCGGTCTTCCCAGCA
CTGCCGATGCATGTCAGCAGACCATGCCTACTAACAAGCAGCAGAATGGACCTTCCAACCAAAGACGAAGATTTAATCCACAGTATCACAACAGGCTAAATGGTCCAGCCAAGTCACAGGGCAGTGGT
AATGAAGCTGATCCCATGGTGAAGAGCAACAACCGACATGAACACAGAAGACAGCCACATAATGGTTTTCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAGGCCCCCTTGGGGACAAAGGCCCC
AGAGGCCCCACCACATTCTGAAAAGGCCCGTCGAAGGCAGCACGCTGCAGACAACTTAGAGACCAGGCCTTTCCGGGGTAATGTTGGTAGGGTTTCACAGTGCAATCTTTGTCCCACTAGAATAGAAG
TTTCCACAGAGGCCACGGTTCTCTCAGTCCCAGCTGTGACGCTGGTGGCCTGAGCTGGGAAGGAAGAGAGCAGGTTTTGCCTGGTTTTGGTTCCCTGCCCAAGGTGCTGACCCAATTCGCTGCCAAAA
GAGAGTCAATCAGAATATACAAACCTGTATGTTTGTGTCGTTCTCTCGCAATCATTTTTACTAATCCTAGTACTCTGCTCTAGCTTGCTTCATAACTCCCATGGCTTTGCTTGATCTGTTGTCGCTTC
TCCTCATCAAGACTTTGCATCATGTTAGCCAGCCAGTATTTACCCATTGTTAGGAAAATCGAGATGTGGCTGAAGATCAGAGGCTCAGTTAGCAACCTACGTTGTAGCTGTGATGTCGACCCATTGGT
TGTCTTTAGAGAGTTAATGTTGAAACAAGAAATTCTTGATCAGACAAACGTGATCTGCTGAAGACACATGTGCTTTTGTAGAATTTAACATCTGGTGTTTTTCTGAAATATTATATAAATATATATAT
AAACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006244990 ⟹ XP_006245052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,235 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,319,949 - 59,493,864 (+)	NCBI
Rnor_6.0	9	64,643,246 - 64,843,963 (+)	NCBI
Rnor_5.0	9	64,442,918 - 64,641,803 (+)	NCBI

Sequence:

show sequence

ATCATGAATAATGCTTGCCTTTCCTCTCCCGACTACTGCACTCCCAGGCAGAAACACCACTGGCGGATGCCACGGGAGGCTCGGGGCAGCTCGGAGACTCCAGAAGCCAGGCTGCTTTCGGGAACAAC
TCTGTGGATTCCCAGGGCTTATACCCCTAGAAGGAAGATGGCTGAACTCAACACTCATGTGAATGTCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACAAAAGCAATAATGAAATTGTCC
TGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTTTGTGGACGGCAGTGCTATTCAGGTTCTTAAAGAATGGAGCATGACGGGGAAAAAGAAGAATAACAAAAGAAAAAGAAGC
AAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGGGGAGAGGCCGGAGGTGGGGCCCCTGCAGCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCTGTGAAAAGGACAGCTC
ATCCCCTGACTCTGCCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCAATACTGGAGGAACCACCAAGGGCTCAGCGTGGGATCACAGAAGGCAGCAGACTACTGCAGCAGAAAATGT
CCTTAGATGGGAACCCCAAAGCTATTCATGGACCATCAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGGGCAGCCTTGTAACCCAAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATGCC
CCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGGCAAAGAAAAGAGGTCCAAATATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTTCTCTGACGAGATACCGAGTCATGATCAAGGA
AGAGGTGGACAGTTCTGTGAAGAAGATCAAAGCAGCTTTTGCTGAGCTACACAACTGCATCATTGACAAAGAAGTTTCACTGATGGCAGAGATGGATAAAGTTAAAGAAGAAGCCATGGACATCCTGA
CTGCCCGTCAGAAGAAGGCAGAGGAGCTGAAGCGACTGACTGATCTAGCCAGTCAAATGGCAGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAATATGATGAA
GAGCTAGGGAAAGCCGCCCGCTTCTCCTGCGACATTGAACAGCTGAAAGCCCAAATCCTGATCTGCGGAGAAATCACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGTTGCC
TCTGCTGAACACTCATGCGGTAGCTTCCGGGAAGCAGGGGAATTTTTCCCGGAAGTCATCCGGTCACAACAAGCCCAATGAGGGGAAAGCAGCGAACCCCAAAATGGTGAGCGGTCTTCCCAGCACTG
CCGATGCATGTCAGCAGACCATGCCTACTAACAAGCAGCAGAATGGACCTTCCAACCAAAGACGAAGATTTAATCCACAGTATCACAACAGGCTAAATGGTCCAGCCAAGTCACAGGGCAGTGGTAAT
GAAGCTGATCCCATGGTGAAGAGCAACAACCGACATGAACACAGAAGACAGCCACATAATGGTTTTCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAGGCCCCCTTGGGGACAAAGGCCCCAGA
GGCCCCACCACATTCTGAAAAGGCCCGTCGAAGGCAGCACGCTGCAGACAACTTAGAGACCAGGCCTTTCCGGGGTAATGTTGGTAGGGTTTCACAGTGCAATCTTTGTCCCACTAGAATAGAAGTTT
CCACAGAGGCCACGGTTCTCTCAGTCCCAGCTGTGACGCTGGTGGCCTGAGCTGGGAAGGAAGAGAGCAGGTTTTGCCTGGTTTTGGTTCCCTGCCCAAGGTGCTGACCCAATTCGCTGCCAAAAGAG
AGTCAATCAGAATATACAAACCTGTATGTTTGTGTCGTTCTCTCGCAATCATTTTTACTAATCCTAGTACTCTGCTCTAGCTTGCTTCATAACTCCCATGGCTTTGCTTGATCTGTTGTCGCTTCTCC
TCATCAAGACTTTGCATCATGTTAGCCAGCCAGTATTTACCCATTGTTAGGAAAATCGAGATGTGGCTGAAGATCAGAGGCTCAGTTAGCAACCTACGTTGTAGCTGTGATGTCGACCCATTGGTTGT
CTTTAGAGAGTTAATGTTGAAACAAGAAATTCTTGATCAGACAAACGTGATCTGCTGAAGACACATGTGCTTTTGTAGAATTTAACATCTGGTGTTTTTCTGAAATATTATATAAATATATATATAAA
CATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCATTTGACA

hide sequence

RefSeq Acc Id:

XM_006244992 ⟹ XP_006245054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,217 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,319,956 - 59,493,864 (+)	NCBI
Rnor_6.0	9	64,643,223 - 64,843,963 (+)	NCBI
Rnor_5.0	9	64,442,918 - 64,641,803 (+)	NCBI

Sequence:

show sequence

GGTGTGCGATCTAAAGTGCGTCCATCATGAATAATGCTTGCCTTTCCTCTCCCGACTACTGCAC
TCCCAGGCAGAAACACCACTGGCGGATGCCACGGGAGGCTCGGGGCAGCTCGGAGACTCCAGAAGCCAGGCTGCTTTCGGGAACAACTCTGTGGATTCCCAGGTCCTGTGGTCAGAGCTGAAGGCCCC
GGTTAGTCCCGCTGCAAGTACATGGCTGGAACACAGGAAACCGGAGCTTCAACGAGCAAGGCTTATACCCCTAGAAGGAAGATGGCTGAACTCAACACTCATGTGAATGTCAAAGAGAAGATCTACGC
AGTTAGATCAGTTGTTCCGAACAAAAGCAATAATGAAATTGTCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTTTGTGGACGGCAGTGCTATTCAGGTTCTTAAAGAAT
GGAGCATGACGGGGAAAAAGAAGAATAACAAAAGAAAAAGAAGCAAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGGGGAGAGGCCGGAGGTGGGGCCCCTGCAGCCCCAGGCACCA
CTGGTACAAAATGGTCACATGAATGGCTGTGAAAAGGACAGCTCATCCCCTGACTCTGCCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCAATACTGGAGGAACCACCAAGGGCTCA
GCGTGGGATCACAGAAGGCAGCAGACTACTGCAGCAGAAAATGTCCTTAGATGGGAACCCCAAAGCTATTCATGGACCATCAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGGGCAGCCTTGTAACC
CAAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATGCCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGGCAAAGAAAAGAGGTCCAAATATTGAGAAATCGGTGAAGGATCTGCAG
CGCTGCACTGTTTCTCTGACGAGATACCGAGTCATGATCAAGGAAGAGGTGGACAGTTCTGTGAAGAAGATCAAAGCAGCTTTTGCTGAGCTACACAACTGCATCATTGACAAAGAAGTTTCACTGAT
GGCAGAGATGGATAAAGTTAAAGAAGAAGCCATGGACATCCTGACTGCCCGTCAGAAGAAGGCAGAGGAGCTGAAGCGACTGACTGATCTAGCCAGTCAAATGGCAGAGATGCAGCTGGCCGAACTCA
GAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAATATGATGAAGAGCTAGGGAAAGCCGCCCGCTTCTCCTGCGACATTGAACAGCTGAAAGCCCAAATCCTGATCTGCGGAGAAATCACACATCCA
AAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGTTGCCTCTGCTGAACACTCATGCGGTAGCTTCCGGGAAGCAGGGGAATTTTTCCCGGAAGTCATCCGGTCACAACAAGCCCAATGAGGG
GAAAGCAGCGAACCCCAAAATGGTGAGCGGTCTTCCCAGCACTGCCGATGCATGTCAGCAGACCATGCCTACTAACAAGCAGCAGAATGGACCTTCCAACCAAAGACGAAGATTTAATCCACAGTATC
ACAACAGGCTAAATGGTCCAGCCAAGTCACAGGGCAGTGGTAATGAAGCTGATCCCATGGTGAAGAGCAACAACCGACATGAACACAGAAGACAGCCACATAATGGTTTTCGTCCCAAAAACAAAGGT
GGTGCCAAAAACCAAGAGGCCCCCTTGGGGACAAAGGCCCCAGAGGCCCCACCACATTCTGAAAAGGCCCGTCGAAGGCAGCACGCTGCAGACAACTTAGAGACCAGGCCTTTCCGGGGTAATGTTGG
TAGGGTTTCACAGTGCAATCTTTGTCCCACTAGAATAGAAGTTTCCACAGAGGCCACGGTTCTCTCAGTCCCAGCTGTGACGCTGGTGGCCTGAGCTGGGAAGGAAGAGAGCAGGTTTTGCCTGGTTT
TGGTTCCCTGCCCAAGGTGCTGACCCAATTCGCTGCCAAAAGAGAGTCAATCAGAATATACAAACCTGTATGTTTGTGTCGTTCTCTCGCAATCATTTTTACTAATCCTAGTACTCTGCTCTAGCTTG
CTTCATAACTCCCATGGCTTTGCTTGATCTGTTGTCGCTTCTCCTCATCAAGACTTTGCATCATGTTAGCCAGCCAGTATTTACCCATTGTTAGGAAAATCGAGATGTGGCTGAAGATCAGAGGCTCA
GTTAGCAACCTACGTTGTAGCTGTGATGTCGACCCATTGGTTGTCTTTAGAGAGTTAATGTTGAAACAAGAAATTCTTGATCAGACAAACGTGATCTGCTGAAGACACATGTGCTTTTGTAGAATTTA
ACATCTGGTGTTTTTCTGAAATATTATATAAATATATATATAAACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCATTTGACA

hide sequence

RefSeq Acc Id:

XM_008767110 ⟹ XP_008765332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,873,201 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,378,978 - 59,493,864 (+)	NCBI
Rnor_6.0	9	64,729,543 - 64,843,963 (+)	NCBI

Sequence:

show sequence

GCCCCGGTTAGTCCCGCTGCAAGTACATGGCTGGAACACAGGAAACCGGAGCTTCAACGAGCAAGTAATCAACCTCCACTCACTTTGGGCTTATACCCCTAGAAGGAAGATGGCTGAACTCAACACTC
ATGTGAATGTCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACAAAAGCAATAATGAAATTGTCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTTTGTGGAC
GGCAGTGCTATTCAGGTTCTTAAAGAATGGAGCATGACGGGGAAAAAGAAGAATAACAAAAGAAAAAGAAGCAAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGGGGAGAGGCCGGA
GGTGGGGCCCCTGCAGCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCTGTGAAAAGGACAGCTCATCCCCTGACTCTGCCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCT
CAATACTGGAGGAACCACCAAGGGCTCAGCGTGGGATCACAGAAGGCAGCAGACTACTGCAGCAGAAAATGTCCTTAGATGGGAACCCCAAAGCTATTCATGGACCATCAGAGAGGTCAGATGGCCTA
CAGTGGTCAGCTGGGCAGCCTTGTAACCCAAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATGCCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGGCAAAGAAAAGAGGTCCAAA
TATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTTCTCTGACGAGATACCGAGTCATGATCAAGGAAGAGGTGGACAGTTCTGTGAAGAAGATCAAAGCAGCTTTTGCTGAGCTACACAACT
GCATCATTGACAAAGAAGTTTCACTGATGGCAGAGATGGATAAAGTTAAAGAAGAAGCCATGGACATCCTGACTGCCCGTCAGAAGAAGGCAGAGGAGCTGAAGCGACTGACTGATCTAGCCAGTCAA
ATGGCAGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAATATGATGAAGAGCTAGGGAAAGCCGCCCGCTTCTCCTGCGACATTGAACAGCTGAAAGCCCAAAT
CCTGATCTGCGGAGAAATCACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGTTGCCTCTGCTGAACACTCATGCGGTAGCTTCCGGGAAGCAGGGGAATTTTTCCCGGAAGT
CATCCGGTCACAACAAGCCCAATGAGGGGAAAGCAGCGAACCCCAAAATGGTGAGCGGTCTTCCCAGCACTGCCGATGCATGTCAGCAGACCATGCCTACTAACAAGCAGCAGAATGGACCTTCCAAC
CAAAGACGAAGATTTAATCCACAGTATCACAACAGGCTAAATGGTCCAGCCAAGTCACAGGGCAGTGGTAATGAAGCTGATCCCATGGTGAAGAGCAACAACCGACATGAACACAGAAGACAGCCACA
TAATGGTTTTCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAGGCCCCCTTGGGGACAAAGGCCCCAGAGGCCCCACCACATTCTGAAAAGGCCCGTCGAAGGCAGCACGCTGCAGACAACTTAG
AGACCAGGCCTTTCCGGGGTAATGTTGGTAGGGTTTCACAGTGCAATCTTTGTCCCACTAGAATAGAAGTTTCCACAGAGGCCACGGTTCTCTCAGTCCCAGCTGTGACGCTGGTGGCCTGAGCTGGG
AAGGAAGAGAGCAGGTTTTGCCTGGTTTTGGTTCCCTGCCCAAGGTGCTGACCCAATTCGCTGCCAAAAGAGAGTCAATCAGAATATACAAACCTGTATGTTTGTGTCGTTCTCTCGCAATCATTTTT
ACTAATCCTAGTACTCTGCTCTAGCTTGCTTCATAACTCCCATGGCTTTGCTTGATCTGTTGTCGCTTCTCCTCATCAAGACTTTGCATCATGTTAGCCAGCCAGTATTTACCCATTGTTAGGAAAAT
CGAGATGTGGCTGAAGATCAGAGGCTCAGTTAGCAACCTACGTTGTAGCTGTGATGTCGACCCATTGGTTGTCTTTAGAGAGTTAATGTTGAAACAAGAAATTCTTGATCAGACAAACGTGATCTGCT
GAAGACACATGTGCTTTTGTAGAATTTAACATCTGGTGTTTTTCTGAAATATTATATAAATATATATATAAACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCATTTGACA

hide sequence

RefSeq Acc Id:

XM_017596460 ⟹ XP_017451949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,482 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,320,251 - 59,493,864 (+)	NCBI
Rnor_6.0	9	64,643,579 - 64,843,963 (+)	NCBI

Sequence:

show sequence

GGGCAGCAAAGTTCGTTTTCCTCGGAGACTCCAGAAGCCAGGCTGCTTTCGGGAACAACTCTGTGGATTCCCAGGTCCTGTGGTCAGAGCTGAAGGCCCCGGTTAGTCCCGCTGCAAGTACATGGCTG
GAACACAGGAAACCGGAGCTTCAACGAGCAAGGCTTATACCCCTAGAAGGAAGATGGCTGAACTCAACACTCATGTGAATGTCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACAAAAGC
AATAATGAAATTGTCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTTTGTGGACGGCAGTGCTATTCAGGTTCTTAAAGAATGGAGCATGACGGGGAAAAAGAAGAATAA
CAAAAGAAAAAGAAGCAAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGGGGAGAGGCCGGAGGTGGGGCCCCTGCAGCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCT
GTGAAAAGGACAGCTCATCCCCTGACTCTGCCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCAATACTGGAGGAACCACCAAGGGCTCAGCGTGGGATCACAGAAGGCAGCAGACTA
CTGCAGCAGAAAATGTCCTTAGATGGGAACCCCAAAGCTATTCATGGACCATCAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGGGCAGCCTTGTAACCCAAGCAAGCCTAAGGCAAAAACATCTCC
TGTTAAGTCCAATGCCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGGCAAAGAAAAGAGGTCCAAATATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTTCTCTGACGAGATACC
GAGTCATGATCAAGGAAGAGGTGGACAGTTCTGTGAAGAAGATCAAAGCAGCTTTTGCTGAGCTACACAACTGCATCATTGACAAAGAAGTTTCACTGATGGCAGAGATGGATAAAGTTAAAGAAGAA
GCCATGGACATCCTGACTGCCCGTCAGAAGAAGGCAGAGGAGCTGAAGCGACTGACTGATCTAGCCAGTCAAATGGCAGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGA
ACGCAAATATGATGAAGAGCTAGGGAAAGCCGCCCGCTTCTCCTGCGACATTGAACAGCTGAAAGCCCAAATCCTGATCTGCGGAGAAATCACACATCCAAAGAACAACTATTCCTCAAGAACTCCCT
GCAGCTCCCTGTTGCCTCTGCTGAACACTCATGCGGTAGCTTCCGGGAAGCAGGGGAATTTTTCCCGGAAGTCATCCGGTCACAACAAGCCCAATGAGGGGAAAGCAGCGAACCCCAAAATGGTGAGC
GGTCTTCCCAGCACTGCCGATGCATGTCAGCAGACCATGCCTACTAACAAGCAGCAGAATGGACCTTCCAACCAAAGACGAAGATTTAATCCACAGTATCACAACAGGCTAAATGGTCCAGCCAAGTC
ACAGGGCAGTGGTAATGAAGCTGATCCCATGGTGAAGAGCAACAACCGACATGAACACAGAAGACAGCCACATAATGGTTTTCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAGGCCCCCTTGG
GGACAAAGGCCCCAGAGGCCCCACCACATTCTGAAAAGGCCCGTCGAAGGCAGCACGCTGCAGACAACTTAGAGACCAGGCCTTTCCGGGGTAATGTTGGTAGGGTTTCACAGTGCAATCTTTGTCCC
ACTAGAATAGAAGTTTCCACAGAGGCCACGGTTCTCTCAGTCCCAGCTGTGACGCTGGTGGCCTGAGCTGGGAAGGAAGAGAGCAGGTTTTGCCTGGTTTTGGTTCCCTGCCCAAGGTGCTGACCCAA
TTCGCTGCCAAAAGAGAGTCAATCAGAATATACAAACCTGTATGTTTGTGTCGTTCTCTCGCAATCATTTTTACTAATCCTAGTACTCTGCTCTAGCTTGCTTCATAACTCCCATGGCTTTGCTTGAT
CTGTTGTCGCTTCTCCTCATCAAGACTTTGCATCATGTTAGCCAGCCAGTATTTACCCATTGTTAGGAAAATCGAGATGTGGCTGAAGATCAGAGGCTCAGTTAGCAACCTACGTTGTAGCTGTGATG
TCGACCCATTGGTTGTCTTTAGAGAGTTAATGTTGAAACAAGAAATTCTTGATCAGACAAACGTGATCTGCTGAAGACACATGTGCTTTTGTAGAATTTAACATCTGGTGTTTTTCTGAAATATTATA
TAAATATATATATAAACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCATTTGACA

hide sequence

RefSeq Acc Id:

XM_039083627 ⟹ XP_038939555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,815,013 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,320,727 - 59,493,864 (+)	NCBI

RefSeq Acc Id:

XM_039083628 ⟹ XP_038939556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,791 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,320,537 - 59,493,864 (+)	NCBI

RefSeq Acc Id:

XM_039083629 ⟹ XP_038939557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,839,657 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,345,453 - 59,493,864 (+)	NCBI

RefSeq Acc Id:

XM_039083630 ⟹ XP_038939558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,815,013 - 66,988,084 (+)	NCBI
mRatBN7.2	9	59,320,727 - 59,493,834 (+)	NCBI

RefSeq Acc Id:

XM_063267193 ⟹ XP_063123263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,266 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267194 ⟹ XP_063123264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,266 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267195 ⟹ XP_063123265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,266 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267196 ⟹ XP_063123266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,266 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267197 ⟹ XP_063123267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,620 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267198 ⟹ XP_063123268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,815,013 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267199 ⟹ XP_063123269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,815,013 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267200 ⟹ XP_063123270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,898 - 66,988,084 (+)	NCBI

RefSeq Acc Id:

XM_063267201 ⟹ XP_063123271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	66,814,742 - 66,988,084 (+)	NCBI


Protein RefSeqs	NP_001014124	(Get FASTA)	NCBI Sequence Viewer
	XP_006245052	(Get FASTA)	NCBI Sequence Viewer
	XP_006245054	(Get FASTA)	NCBI Sequence Viewer
	XP_008765332	(Get FASTA)	NCBI Sequence Viewer
	XP_017451949	(Get FASTA)	NCBI Sequence Viewer
	XP_038939555	(Get FASTA)	NCBI Sequence Viewer
	XP_038939556	(Get FASTA)	NCBI Sequence Viewer
	XP_038939557	(Get FASTA)	NCBI Sequence Viewer
	XP_038939558	(Get FASTA)	NCBI Sequence Viewer
	XP_063123263	(Get FASTA)	NCBI Sequence Viewer
	XP_063123264	(Get FASTA)	NCBI Sequence Viewer
	XP_063123265	(Get FASTA)	NCBI Sequence Viewer
	XP_063123266	(Get FASTA)	NCBI Sequence Viewer
	XP_063123267	(Get FASTA)	NCBI Sequence Viewer
	XP_063123268	(Get FASTA)	NCBI Sequence Viewer
	XP_063123269	(Get FASTA)	NCBI Sequence Viewer
	XP_063123270	(Get FASTA)	NCBI Sequence Viewer
	XP_063123271	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85874	(Get FASTA)	NCBI Sequence Viewer
	EDL99016	(Get FASTA)	NCBI Sequence Viewer
	EDL99017	(Get FASTA)	NCBI Sequence Viewer
	EDL99018	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021527
	ENSRNOP00000069610
	ENSRNOP00000077000
GenBank Protein	Q5U2T3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014124 ⟸ NM_001014102

- UniProtKB:

Q5U2T3 (UniProtKB/Swiss-Prot), A6IP44 (UniProtKB/TrEMBL), A0A0G2JVT4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWSMTGKKKNNKRKRSKSKQHQGNKDAKDKGERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSAREKLALT
PREKKISILEEPPRAQRGITEGSRLLQQKMSLDGNPKAIHGPSERSDGLQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAA
FAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNNYSSRTPCSSLLPLLNTHAVASGKQ
GNFSRKSSGHNKPNEGKAANPKMVSGLPSTADACQQTMPTNKQQNGPSNQRRRFNPQYHNRLNGPAKSQGSGNEADPMVKSNNRHEHRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQ
HAADNLETRPFRGNVGRVSQCNLCPTRIEVSTEATVLSVPAVTLVA

hide sequence

RefSeq Acc Id:	XP_006245054 ⟸ XM_006244992
- Peptide Label:	isoform X6
- UniProtKB:	A6IP42 (UniProtKB/TrEMBL), A0A8I5Y6T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGTQETGASTSKAYTPRRKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAV QAFVDGSAIQVLKEWSMTGKKKNNKRKRSKSKQHQGNKDAKDKGERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSAREKLALTPREKKISILEEPPRAQRGITEGSRLLQQKMSLDGNPKAIHGPSE RSDGLQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLT DLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNNYSSRTPCSSLLPLLNTHAVASGKQGNFSRKSSGHNKPNEGKAANPKMVSGLPSTADACQQTMPTNKQQ NGPSNQRRRFNPQYHNRLNGPAKSQGSGNEADPMVKSNNRHEHRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQHAADNLETRPFRGNVGRVSQCNLCPTRIEVSTEATVLSVPAVTL VA hide sequence

RefSeq Acc Id:	XP_006245052 ⟸ XM_006244990
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JVT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNNACLSSPDYCTPRQKHHWRMPREARGSSETPEARLLSGTTLWIPRAYTPRRKMAELNTHVNV KEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWSMTGKKKNNKRKRSKSKQHQGNKDAKDKGERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSAREKLALTPREKKISILE EPPRAQRGITEGSRLLQQKMSLDGNPKAIHGPSERSDGLQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIID KEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNNYSSRTPCSSLLPLLNTHAVASGKQGNFSRKSSGH NKPNEGKAANPKMVSGLPSTADACQQTMPTNKQQNGPSNQRRRFNPQYHNRLNGPAKSQGSGNEADPMVKSNNRHEHRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQHAADNLETRP FRGNVGRVSQCNLCPTRIEVSTEATVLSVPAVTLVA hide sequence

RefSeq Acc Id:	XP_008765332 ⟸ XM_008767110
- Peptide Label:	isoform X8
- UniProtKB:	Q5U2T3 (UniProtKB/Swiss-Prot), A6IP44 (UniProtKB/TrEMBL), A0A0G2JVT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWSMTGK KKNNKRKRSKSKQHQGNKDAKDKGERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSAREKLALTPREKKISILEEPPRAQRGITEGSRLLQQKMSLDGNPKAIHGPSERSDGLQWSAGQPCNPSKPKA KTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKH FVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNNYSSRTPCSSLLPLLNTHAVASGKQGNFSRKSSGHNKPNEGKAANPKMVSGLPSTADACQQTMPTNKQQNGPSNQRRRFNPQYHNRLNG PAKSQGSGNEADPMVKSNNRHEHRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQHAADNLETRPFRGNVGRVSQCNLCPTRIEVSTEATVLSVPAVTLVA hide sequence

RefSeq Acc Id:	XP_017451949 ⟸ XM_017596460
- Peptide Label:	isoform X6
- UniProtKB:	A6IP42 (UniProtKB/TrEMBL), A0A8I5Y6T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGTQETGASTSKAYTPRRKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWSMTGKKKNNKRKRSKSKQHQGNKDAKDKGERPEVGPLQPQAPLVQNGHM NGCEKDSSSPDSAREKLALTPREKKISILEEPPRAQRGITEGSRLLQQKMSLDGNPKAIHGPSERSDGLQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLT RYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNNYSSR TPCSSLLPLLNTHAVASGKQGNFSRKSSGHNKPNEGKAANPKMVSGLPSTADACQQTMPTNKQQNGPSNQRRRFNPQYHNRLNGPAKSQGSGNEADPMVKSNNRHEHRRQPHNGFRPKNKGGAKNQEA PLGTKAPEAPPHSEKARRRQHAADNLETRPFRGNVGRVSQCNLCPTRIEVSTEATVLSVPAVTLVA hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2T3-F1-model_v2	AlphaFold	Q5U2T3	1-558	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13696680

Promoter ID:

EPDNEW_R7205

Type:

single initiation site

Name:

Spats2l_1

Description:

spermatogenesis associated, serine-rich 2-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	64,745,240 - 64,745,300	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-27475	BioCyc
Ensembl Genes	ENSRNOG00000016012	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000021527	ENTREZGENE
	ENSRNOT00000081497	ENTREZGENE
	ENSRNOT00000100381	ENTREZGENE
IMAGE_CLONE	IMAGE:7191441	IMAGE-MGC_LOAD
InterPro	DUF1387	UniProtKB/Swiss-Prot
	UBA-like_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:316426	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94640	IMAGE-MGC_LOAD
NCBI Gene	316426	ENTREZGENE
PANTHER	PTHR15623	UniProtKB/Swiss-Prot
	SPATS2-LIKE PROTEIN	UniProtKB/Swiss-Prot
Pfam	DUF1387	UniProtKB/Swiss-Prot
PhenoGen	Spats2l	PhenoGen
RatGTEx	ENSRNOG00000016012	RatGTEx
Superfamily-SCOP	SSF46934	UniProtKB/Swiss-Prot
UniProt	A0A0G2JVT4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y6T6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y992	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZRR1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QB71	ENTREZGENE, UniProtKB/TrEMBL
	A6IP42	ENTREZGENE, UniProtKB/TrEMBL
	A6IP43	ENTREZGENE, UniProtKB/TrEMBL
	A6IP44	ENTREZGENE, UniProtKB/TrEMBL
	Q5U2T3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Spats2l	spermatogenesis associated, serine-rich 2-like	LOC100360294	spermatogenesis associated, serine-rich 2-like	Data merged from RGD:2322457	1643240	APPROVED
2010-05-06	LOC100360294	spermatogenesis associated, serine-rich 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-02-12	Spats2l	spermatogenesis associated, serine-rich 2-like	RGD1309930	similar to 2810022L02Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1309930	similar to 2810022L02Rik protein	RGD1309930_predicted	similar to 2810022L02Rik protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1309930_predicted	similar to 2810022L02Rik protein (predicted)	LOC316426_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC316426_predicted	similar to 2810022L02Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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