Aven (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 3 | 119,753,395 - 119,886,009 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 3 | 119,872,661 - 119,886,008 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 3 | 99,299,009 - 99,431,635 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 99,298,930 - 99,431,634 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 3 | 102,925,903 - 103,058,688 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 111,524,903 - 111,657,677 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 109,221,460 - 109,354,059 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 103,980,612 - 104,117,193 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 104,042,168 - 104,117,192 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 110,574,485 - 110,709,920 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 3 | 98,404,029 - 98,475,755 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 3 | 98,346,524 - 98,415,541 (+) | NCBI | | Celera | | | RGSC_v3.1 | 3 | 98,237,657 - 98,372,181 (+) | NCBI | | | | | Cytogenetic Map | 3 | q35 | NCBI | | | | |
|
AVEN (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 15 | 33,851,781 - 34,075,325 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 15 | 33,858,782 - 34,075,155 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 15 | 34,158,428 - 34,331,405 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 15 | 31,945,720 - 32,118,595 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 15 | 31,945,720 - 32,118,595 | NCBI | | | | | Celera | 15 | 10,960,950 - 11,134,340 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | q14 | NCBI | | | | | HuRef | 15 | 11,021,316 - 11,195,244 (-) | NCBI | | HuRef | | | CHM1_1 | 15 | 34,276,426 - 34,449,238 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 15 | 31,663,872 - 31,837,383 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Aven (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 2 | 112,323,231 - 112,461,598 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 112,323,309 - 112,464,918 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 2 | 112,492,883 - 112,631,253 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 112,492,964 - 112,634,573 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 2 | 112,333,121 - 112,471,410 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 112,293,803 - 112,431,909 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 113,644,252 - 113,779,025 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | E3 | NCBI | | | | | cM Map | 2 | 57.04 | NCBI | | | | |
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Aven (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955416 | 690,392 - 712,042 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955416 | 690,440 - 712,391 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
AVEN (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 16 | 22,652,270 - 22,861,052 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 15 | 27,373,816 - 27,568,902 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 15 | 12,379,221 - 12,574,147 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 15 | 31,215,478 - 31,367,717 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | |
|
AVEN (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 30 | 1,000,781 - 1,179,463 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 30 | 991,954 - 1,179,114 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 30 | 1,048,268 - 1,223,852 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 30 | 1,101,200 - 1,277,918 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 30 | 1,048,209 - 1,224,207 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 30 | 1,146,566 - 1,323,371 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 30 | 1,274,884 - 1,450,896 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
|
Aven (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024408640 | 79,561,238 - 79,716,854 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936673 | 2,435,308 - 2,565,180 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936673 | 2,434,984 - 2,568,868 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
AVEN (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 7 | 80,447,524 - 80,640,119 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 80,447,337 - 80,640,120 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 86,439,784 - 86,475,509 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
AVEN (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 26 | 48,868,244 - 49,048,037 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 26 | 48,868,475 - 49,050,258 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666048 | 91,854,717 - 92,037,491 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Aven (Heterocephalus glaber - naked mole-rat) |
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Aven (Rattus rattus - black rat) |
|