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Gene: Ell3 (elongation factor for RNA polymerase II 3) Rattus norvegicus

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Symbol:

Ell3

Name:

elongation factor for RNA polymerase II 3

RGD ID:

1309917

Description:

Predicted to enable cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including positive regulation of transcription elongation by RNA polymerase II; regulation of epithelial to mesenchymal transition; and transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELL3 (elongation factor for RNA polymerase II 3); PARTICIPATES IN RNA polymerase II transcription elongation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

elongation factor RNA polymerase II-like 3; LOC296102; RNA polymerase II elongation factor ELL3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	128,866,755 - 128,870,896 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	128,864,777 - 128,870,852 (-)	Ensembl				GRCr8
mRatBN7.2	3	108,413,035 - 108,417,181 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	108,410,448 - 108,417,132 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	112,087,470 - 112,091,565 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	120,682,989 - 120,687,084 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	118,343,390 - 118,347,485 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	113,400,395 - 113,405,869 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,401,734 - 113,405,829 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	119,940,838 - 119,945,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	108,241,165 - 108,245,260 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	107,314,256 - 107,318,351 (-)	NCBI		Celera
RGSC_v3.1	3	108,141,954 - 108,146,050 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

coumarin (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

fulvestrant (ISO)

furan (EXP)

glafenine (EXP)

hydralazine (ISO)

okadaic acid (ISO)

paracetamol (EXP)

PCB138 (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

topotecan (ISO)

trichloroethene (EXP)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription elongation (ISO)

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ISO)

negative regulation of signal transduction by p53 class mediator (ISO)

positive regulation of DNA-templated transcription, elongation (ISO)

positive regulation of neural precursor cell proliferation (ISO)

positive regulation of neurogenesis (ISO)

positive regulation of transcription by RNA polymerase II (ISO,ISS)

positive regulation of transcription elongation by RNA polymerase II (IBA)

regulation of epithelial to mesenchymal transition (ISO,ISS)

snRNA transcription by RNA polymerase II (IBA,ISO,ISS)

stem cell differentiation (ISO,ISS)

transcription by RNA polymerase II (IEA,ISO,ISS)

transcription elongation by RNA polymerase II (IEA,ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (IEA,ISO,ISS)

transcription elongation factor complex (IBA,IEA,ISO,ISS)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IBA,ISO,ISS)

protein binding (ISO)

protein disulfide isomerase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The super elongation complex (SEC) family in transcriptional control.	Luo Z, etal., Nat Rev Mol Cell Biol. 2012 Sep;13(9):543-7. doi: 10.1038/nrm3417. Epub 2012 Aug 16.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10882741	PMID:12477932	PMID:22195968	PMID:22768269	PMID:23273992

Genomics

Comparative Map Data

Ell3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	128,866,755 - 128,870,896 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	128,864,777 - 128,870,852 (-)	Ensembl				GRCr8
mRatBN7.2	3	108,413,035 - 108,417,181 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	108,410,448 - 108,417,132 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	112,087,470 - 112,091,565 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	120,682,989 - 120,687,084 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	118,343,390 - 118,347,485 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	113,400,395 - 113,405,869 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,401,734 - 113,405,829 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	119,940,838 - 119,945,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	108,241,165 - 108,245,260 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	107,314,256 - 107,318,351 (-)	NCBI		Celera
RGSC_v3.1	3	108,141,954 - 108,146,050 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

ELL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,772,620 - 43,776,966 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,772,605 - 43,777,315 (-)	Ensembl			hg38	GRCh38
GRCh37	15	44,064,818 - 44,069,164 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,852,090 - 41,856,794 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	41,852,113 - 41,856,476	NCBI
Celera	15	20,954,260 - 20,958,964 (-)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,887,660 - 20,892,364 (-)	NCBI		HuRef
CHM1_1	15	44,183,054 - 44,187,758 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,579,980 - 41,584,326 (-)	NCBI		T2T-CHM13v2.0

Ell3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	121,269,508 - 121,273,082 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	121,269,491 - 121,274,759 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	121,439,027 - 121,442,601 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	121,439,010 - 121,444,278 (-)	NCBI			mm10	GRCm38
MGSCv37	2	121,264,763 - 121,268,337 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,130,468 - 121,134,042 (-)	NCBI		MGSCv36	mm8
Celera	2	122,589,739 - 122,593,314 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.39	NCBI

Ell3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	10,198,508 - 10,226,120 (-)	Ensembl
ChiLan1.0	NW_004955416	10,223,213 - 10,226,978 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	33,024,393 - 33,029,401 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	37,186,130 - 37,191,133 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	22,732,742 - 22,737,522 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	40,821,766 - 40,827,112 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	40,821,759 - 40,827,070 (-)	Ensembl			panPan2	panpan1.1

ELL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	10,514,633 - 10,517,963 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	10,515,045 - 10,517,880 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	10,573,031 - 10,576,369 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	10,651,169 - 10,654,510 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	10,651,581 - 10,654,419 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	10,560,314 - 10,563,649 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	10,682,229 - 10,685,563 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	10,801,959 - 10,805,298 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ell3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	88,987,386 - 88,990,481 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	6,835,930 - 6,838,544 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	6,835,410 - 6,838,582 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	127,781,403 - 127,784,843 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	127,781,357 - 127,784,803 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	142,610,862 - 142,614,315 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,268,461 - 39,273,833 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	39,269,538 - 39,273,321 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	101,717,896 - 101,723,232 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ell3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	10,786,900 - 10,789,766 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624804	10,784,575 - 10,789,838 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ell3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	99,592,097 - 99,596,088 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ell3
15 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	103
Interacting mature miRNAs:	121
Transcripts:	ENSRNOT00000036823
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	122654702	136118980	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

RH129491

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	108,413,006 - 108,413,160 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	113,401,704 - 113,401,857	NCBI	Rnor6.0
Rnor_5.0	3	119,941,823 - 119,941,976	UniSTS	Rnor5.0
RGSC_v3.4	3	108,241,135 - 108,241,288	UniSTS	RGSC3.4
Celera	3	107,314,226 - 107,314,379	UniSTS
RH 3.4 Map	3	948.9	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH131986

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	108,412,652 - 108,412,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	113,401,350 - 113,401,547	NCBI	Rnor6.0
Rnor_5.0	3	119,941,469 - 119,941,666	UniSTS	Rnor5.0
RGSC_v3.4	3	108,240,781 - 108,240,978	UniSTS	RGSC3.4
Celera	3	107,313,872 - 107,314,069	UniSTS
RH 3.4 Map	3	953.6	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH139958

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	108,413,146 - 108,413,348 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	113,401,844 - 113,402,045	NCBI	Rnor6.0
Rnor_5.0	3	119,941,963 - 119,942,164	UniSTS	Rnor5.0
RGSC_v3.4	3	108,241,275 - 108,241,476	UniSTS	RGSC3.4
Celera	3	107,314,366 - 107,314,567	UniSTS
RH 3.4 Map	3	953.1	UniSTS
Cytogenetic Map	3	q35	UniSTS

UniSTS:234508

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	108,413,283 - 108,413,517 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	113,401,981 - 113,402,214	NCBI	Rnor6.0
Rnor_5.0	3	119,942,100 - 119,942,333	UniSTS	Rnor5.0
RGSC_v3.4	3	108,241,412 - 108,241,645	UniSTS	RGSC3.4
Celera	3	107,314,503 - 107,314,736	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	65	113	91	90	59	92	59	6	354	190	11	92	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC084693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036823 ⟹ ENSRNOP00000031619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	128,864,777 - 128,870,852 (-)	Ensembl
mRatBN7.2 Ensembl	3	108,410,448 - 108,417,132 (-)	Ensembl
Rnor_6.0 Ensembl	3	113,401,734 - 113,405,829 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105807 ⟹ ENSRNOP00000085076

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	108,411,411 - 108,417,132 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133076 ⟹ ENSRNOP00000102332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	128,866,693 - 128,870,852 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140394 ⟹ ENSRNOP00000101184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	128,866,774 - 128,870,852 (-)	Ensembl

RefSeq Acc Id:

NM_001011957 ⟹ NP_001011957

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	128,866,757 - 128,870,852 (-)	NCBI
mRatBN7.2	3	108,413,037 - 108,417,132 (-)	NCBI
Rnor_6.0	3	113,401,734 - 113,405,829 (-)	NCBI
Rnor_5.0	3	119,940,838 - 119,945,974 (-)	NCBI
RGSC_v3.4	3	108,241,165 - 108,245,260 (-)	RGD
Celera	3	107,314,256 - 107,318,351 (-)	RGD

Sequence:

show sequence

GAGGTGGCCCTCGCCTGTGGTCCCAGATCTGCATGTGCGCGACTTTGGCACCATGGAGGGGACC
CAGGAAGCTCTGAGTGGGAAAATGCGGCTCCTCTTCACCCCTGCTGCTCGAACCAGCCTCCTGA
TGCTAAGACTCAACGAGGCGGCGCTGCGGGCACTACAAGAGTGTCAGCAGCAACAGGTACGGCC
AGTGATCGCTTTCCAAGGCCAACGAGGGTATCTAAGGCTCCCAGGTCCTGGATGGTCCTGCCTC
TTCTCCTTCATAGTATCCCAGTGTGGCCAAGAGGGTGGTGGCTTGGACCTTGTGTACCAACGCT
TAGGCAGATCTGGGCCTAACTGTCTCCACTGCCTGGGCTCACTGAGAGAGCGACTTACTATTTG
GGCAGCCATGGATACGATCCCAGCTCCACTGTTAGCTCAGGAACACCTGACTGAAGGTACCAGA
GAGTCTGAGAGCTGGCAGGACAGCGAAGATGAACCTGAAGGCCATCCCCAGATGGCACTACAAG
AGGTGTCTGACCCACTGGCAAGCAACCATGAACAGTCACTCCCAGGATCCTCCAGTGAGCCCAT
GGCACAGTGGGAAGTGAGAAACCACACTTACCTTTCAAACAGAGAGCCTGATCAGCCACTGCCT
TCCTCTGCTAGCCAGAAACGCCTGGACAAGAAACGTTCAGCACCTATAACCACTGAAGAACCAG
AGGAAAAAAGGCCCAGAGCTCTGCCTCTAGCCTCAAGTCCACTACAAGGACTATCAAATCAGGA
CTCACCAGAGGAACAAGACTGGGGGCAAGATGCAGATGGAGATTCCAGGCTGGAGCAGAGTCTC
TCAGTTCAATCAGCTTCTGAATCCCCAAGCCCTGAGGAGGTACCAGATTATCTCCTGCAATACA
GCACCATCCACAGTGCAGAGCAGCAGCAGGCCTACGAGCAGGACTTTGAGACCGACTATGCTGA
ATACCGCATTCTGCACGCCCGTGTCGGGGCTGCAAGCCAGAGGTTCACAGAGCTGGGGGCAGAG
ATCAAGAGACTTCAGCGAGGAACTCCAGAGCACAAGGTGCTAGAAGACAAGATAGTCCAGGAGT
ATAAAAAGTTCAGAAAGCGGTATCCCAGTTACAGCGAGGAGAAGCGGCGCTGTGAGTACCTGCA
TGAGAAACTGTCCCACATTAAAGGTCTCATCCTGGAATTTGAGGAAAAGAACAGGGGCAGCTGA
AACTGTCCAGAGGGCTTGACCCTTCCTTCCCCAGTGATTAACCAAACAGCTGAAAGATGGAGCC
CATCTGTGTTTCTTATATCCGCGGTGGCAGGAGAGCCATGCTAGGTTCTTGCAGGTTGATTTTT
GATGTTGCCGTAATTTTTTAGGGTGTGGGCATGGTATCATCTCCTCAGCTGTGCCCAGGGGACT
AGGAAAGTAGGAGACGCTTGGCTTCTTCAACTTTATTTTAGCTAAGTCATTTTCAGATCCTGAA
AAGTGACATTTCCAGGTTAACCTTGAGAATGTTAGGCAAGCAAGCAAGTTTAGTAAAGTTGCCT
TGCAGGAATGAGAACTTCTGGTGGTGGAGCTCATTGGACTTACAGTGTACCTAGATGTAACATG
ACTGAAAAATTAAAACTGATTGCTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234831 ⟹ XP_006234893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	128,866,755 - 128,870,896 (-)	NCBI
mRatBN7.2	3	108,413,035 - 108,417,181 (-)	NCBI
Rnor_6.0	3	113,400,395 - 113,405,869 (-)	NCBI
Rnor_5.0	3	119,940,838 - 119,945,974 (-)	NCBI

Sequence:

show sequence

GACCCGGAGGGCGGGAGTGCCAGCCTAGGCTTGCAAGGTAGAGGTGGCCCTCGCCTGTGGTCCC
AGATCTGCATGTGCGCGACTTTGGCACCATGGAGGGGACCCAGGAAGCTCTGAGTGGGAAAATG
CGGCTCCTCTTCACCCCTGCTGCTCGAACCAGCCTCCTGATGCTAAGACTCAACGAGGCGGCGC
TGCGGGCACTACAAGAGTGTCAGCAGCAACAGGTACGGCCAGTGATCGCTTTCCAAGGCCAACG
AGGGTATCTAAGGCTCCCAGGTCCTGGATGGTCCTGCCTCTTCTCCTTCATAGTATCCCAGTGT
GGCCAAGAGGGTGGTGGCTTGGACCTTGTGTACCAACGCTTAGGCAGATCTGGGCCTAACTGTC
TCCACTGCCTGGGCTCACTGAGAGAGCGACTTACTATTTGGGCAGCCATGGATACGATCCCAGC
TCCACTGTTAGCTCAGGAACACCTGACTGAAGGTACCAGAGAGTCTGAGAGCTGGCAGGACAGC
GAAGATGAACCTGAAGGCCATCCCCAGATGGCACTACAAGAGGTGTCTGACCCACTGGCAAGCA
ACCATGAACAGTCACTCCCAGGATCCTCCAGTGAGCCCATGGCACAGTGGGAAGTGAGAAACCA
CACTTACCTTTCAAACAGAGAGCCTGATCAGCCACTGCCTTCCTCTGCTAGCCAGAAACGCCTG
GACAAGAAACGTTCAGCACCTATAACCACTGAAGAACCAGAGGAAAAAAGGCCCAGAGCTCTGC
CTCTAGCCTCAAGTCCACTACAAGGACTATCAAATCAGGACTCACCAGAGGAACAAGACTGGGG
GCAAGATGCAGATGGAGATTCCAGGCTGGAGCAGAGTCTCTCAGTTCAATCAGCTTCTGAATCC
CCAAGCCCTGAGGAGGTACCAGATTATCTCCTGCAATACAGCACCATCCACAGTGCAGAGCAGC
AGCAGGCCTACGAGCAGGACTTTGAGACCGACTATGCTGAATACCGCATTCTGCACGCCCGTGT
CGGGGCTGCAAGCCAGAGGTTCACAGAGCTGGGGGCAGAGATCAAGAGACTTCAGCGAGGAACT
CCAGAGCACAAGGTGCTAGAAGACAAGATAGTCCAGGAGTATAAAAAGTTCAGAAAGGGTGCTT
TTTCTCTGCAGCGGTATCCCAGTTACAGCGAGGAGAAGCGGCGCTGTGAGTACCTGCATGAGAA
ACTGTCCCACATTAAAGGTCTCATCCTGGAATTTGAGGAAAAGAACAGGGGCAGCTGAAACTGT
CCAGAGGGCTTGACCCTTCCTTCCCCAGTGATTAACCAAACAGCTGAAAGATGGAGCCCATCTG
TGTTTCTTATATCCGCGGTGGCAGGAGAGCCATGCTAGGTTCTTGCAGGTTGATTTTTGATGTT
GCCGTAATTTTTTAGGGTGTGGGCATGGTATCATCTCCTCAGCTGTGCCCAGGGGACTAGGAAA
GTAGGAGACGCTTGGCTTCTTCAACTTTATTTTAGCTAAGTCATTTTCAGATCCTGAAAAGTGA
CATTTCCAGGTTAACCTTGAGAATGTTAGGCAAGCAAGCAAGTTTAGTAAAGTTGCCTTGCAGG
AATGAGAACTTCTGGTGGTGGAGCTCATTGGACTTACAGTGTACCTAGATGTAACATGACTGAA
AAATTAAAACTGATTGCTTCTGTGTCTTTTGTGTGATCATTAGCCTTAATCATCCAAGGCAGTG
CTGTCTATCTGAACTACCTTTGAGACAGACTCTCTGAAAGGCTGGATCCCCATGTTCCAGCCAA
GTGTTATGAACCAGTCATCTTTATTGTACTCATACAGGCTAGGTACATGCACACTACTAGACAA
CACTGCCTTCCACCACCCACGACAGCATCGAATATGATCCAGATCTCTATTTTGTTATCAAGCT
TTACCAAAAATATACTTAAATGGACTATAGTAAAAAAAGAGTCACCTAGAAATAGTTATCCACC
TAGAACTATCCAGGGTTGAAAGCTACAATTATGGACAAGATTCTGATTTAGCTATAAAAAGAGT
GCAATACTCTAATCCATCCAAAAGAAAACAGACTTCTGTAGGCTCTTGTTCTTGCCAATGATGA
TACATGTTTCCCTGTTTCACTGGAGGAAAATGGCTACACCCAAGGATCTGGGGAGAACTGCACC
CAGCAGTGTCAATAATTCCTAAAACTGGATGGAACTGCTGTCATTCACACAGGGCACAATGGGC
AGAGAACCATCCTTATGAGGCATGAGCATGCAGACAGCTTGGCTGGTGTGACAAGAATAGCAGC
ATTCATCTTTAGGCCACAAATGAAGCCAGAAACAACTGTAATCTCAGCACCTGGGGGCTGGGGA
AGGAGGACTGTCACAAGTTCAAGGACAGCTTGGGCTACAGAAGGAAACTAAGAAATTAGAAGAT
TTAGAGACGGTAACTGGACCTATTCAGTTTGAAGTTACAGGAATCAGCATAGCAGGGTTTTGTT
TTTAAGATTAAAAACAACTTAAGATGCTAGCCTCAAACCTGCTATGTAGCCAAGGATGGCCTTG
AACATTAGCTCTCTTGCCTGTACCTCCCATGTGTTGGGATTACAGGTGTTAACATATCTGGCTT
AGCTACAAGTATTGAAACACTTCTATCTATAATAACAGTTTGAAGACCCTGGTTCTCCATTCCA
TGAGGGAAAAAAACCCAACAGTATAAAGGGGGCACATTTATTGTCACTGTTCCAAATGTACAAA
AAAAATTAGAAAATAACCCCCCAACTCAATTCCCCCCACCCCTACCACATTCTTCCCAACACAA
ATAATTTTCTCCCCAAACCACAAACATAAACTGGTCCTGGTATTTTCAAACAGTGCAGCTAAGA
AACAGTTTAGAGAAAATTTAACAGGATTCAGAGTATATCCATTCTGTCCTCTCTGATGGTTTTG
CTTTCTCTGGTGTAAGAGTCCTTTTATAAAGTGGTGCATTTGGCTGTTGCTTTAGAGGTCCTCT
TGTGCCTTCTTCTTCTT

hide sequence

RefSeq Acc Id:

XM_006234832 ⟹ XP_006234894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	128,866,755 - 128,870,694 (-)	NCBI
mRatBN7.2	3	108,413,035 - 108,416,976 (-)	NCBI
Rnor_6.0	3	113,400,395 - 113,405,631 (-)	NCBI
Rnor_5.0	3	119,940,838 - 119,945,974 (-)	NCBI

Sequence:

show sequence

GGGCCCCTTCTTTCCTTCCGGACCAACCGGACCTTGGCCTCCGTAGGCTATGCTGGAGAAGGGA
CTTGGGGAGGTACGGCCAGTGATCGCTTTCCAAGGCCAACGAGGGTATCTAAGGCTCCCAGGTC
CTGGATGGTCCTGCCTCTTCTCCTTCATAGTATCCCAGTGTGGCCAAGAGGGTGGTGGCTTGGA
CCTTGTGTACCAACGCTTAGGCAGATCTGGGCCTAACTGTCTCCACTGCCTGGGCTCACTGAGA
GAGCGACTTACTATTTGGGCAGCCATGGATACGATCCCAGCTCCACTGTTAGCTCAGGAACACC
TGACTGAAGGTACCAGAGAGTCTGAGAGCTGGCAGGACAGCGAAGATGAACCTGAAGGCCATCC
CCAGATGGCACTACAAGAGGTGTCTGACCCACTGGCAAGCAACCATGAACAGTCACTCCCAGGA
TCCTCCAGTGAGCCCATGGCACAGTGGGAAGTGAGAAACCACACTTACCTTTCAAACAGAGAGC
CTGATCAGCCACTGCCTTCCTCTGCTAGCCAGAAACGCCTGGACAAGAAACGTTCAGCACCTAT
AACCACTGAAGAACCAGAGGAAAAAAGGCCCAGAGCTCTGCCTCTAGCCTCAAGTCCACTACAA
GGACTATCAAATCAGGACTCACCAGAGGAACAAGACTGGGGGCAAGATGCAGATGGAGATTCCA
GGCTGGAGCAGAGTCTCTCAGTTCAATCAGCTTCTGAATCCCCAAGCCCTGAGGAGGTACCAGA
TTATCTCCTGCAATACAGCACCATCCACAGTGCAGAGCAGCAGCAGGCCTACGAGCAGGACTTT
GAGACCGACTATGCTGAATACCGCATTCTGCACGCCCGTGTCGGGGCTGCAAGCCAGAGGTTCA
CAGAGCTGGGGGCAGAGATCAAGAGACTTCAGCGAGGAACTCCAGAGCACAAGGTGCTAGAAGA
CAAGATAGTCCAGGAGTATAAAAAGTTCAGAAAGGGTGCTTTTTCTCTGCAGCGGTATCCCAGT
TACAGCGAGGAGAAGCGGCGCTGTGAGTACCTGCATGAGAAACTGTCCCACATTAAAGGTCTCA
TCCTGGAATTTGAGGAAAAGAACAGGGGCAGCTGAAACTGTCCAGAGGGCTTGACCCTTCCTTC
CCCAGTGATTAACCAAACAGCTGAAAGATGGAGCCCATCTGTGTTTCTTATATCCGCGGTGGCA
GGAGAGCCATGCTAGGTTCTTGCAGGTTGATTTTTGATGTTGCCGTAATTTTTTAGGGTGTGGG
CATGGTATCATCTCCTCAGCTGTGCCCAGGGGACTAGGAAAGTAGGAGACGCTTGGCTTCTTCA
ACTTTATTTTAGCTAAGTCATTTTCAGATCCTGAAAAGTGACATTTCCAGGTTAACCTTGAGAA
TGTTAGGCAAGCAAGCAAGTTTAGTAAAGTTGCCTTGCAGGAATGAGAACTTCTGGTGGTGGAG
CTCATTGGACTTACAGTGTACCTAGATGTAACATGACTGAAAAATTAAAACTGATTGCTTCTGT
GTCTTTTGTGTGATCATTAGCCTTAATCATCCAAGGCAGTGCTGTCTATCTGAACTACCTTTGA
GACAGACTCTCTGAAAGGCTGGATCCCCATGTTCCAGCCAAGTGTTATGAACCAGTCATCTTTA
TTGTACTCATACAGGCTAGGTACATGCACACTACTAGACAACACTGCCTTCCACCACCCACGAC
AGCATCGAATATGATCCAGATCTCTATTTTGTTATCAAGCTTTACCAAAAATATACTTAAATGG
ACTATAGTAAAAAAAGAGTCACCTAGAAATAGTTATCCACCTAGAACTATCCAGGGTTGAAAGC
TACAATTATGGACAAGATTCTGATTTAGCTATAAAAAGAGTGCAATACTCTAATCCATCCAAAA
GAAAACAGACTTCTGTAGGCTCTTGTTCTTGCCAATGATGATACATGTTTCCCTGTTTCACTGG
AGGAAAATGGCTACACCCAAGGATCTGGGGAGAACTGCACCCAGCAGTGTCAATAATTCCTAAA
ACTGGATGGAACTGCTGTCATTCACACAGGGCACAATGGGCAGAGAACCATCCTTATGAGGCAT
GAGCATGCAGACAGCTTGGCTGGTGTGACAAGAATAGCAGCATTCATCTTTAGGCCACAAATGA
AGCCAGAAACAACTGTAATCTCAGCACCTGGGGGCTGGGGAAGGAGGACTGTCACAAGTTCAAG
GACAGCTTGGGCTACAGAAGGAAACTAAGAAATTAGAAGATTTAGAGACGGTAACTGGACCTAT
TCAGTTTGAAGTTACAGGAATCAGCATAGCAGGGTTTTGTTTTTAAGATTAAAAACAACTTAAG
ATGCTAGCCTCAAACCTGCTATGTAGCCAAGGATGGCCTTGAACATTAGCTCTCTTGCCTGTAC
CTCCCATGTGTTGGGATTACAGGTGTTAACATATCTGGCTTAGCTACAAGTATTGAAACACTTC
TATCTATAATAACAGTTTGAAGACCCTGGTTCTCCATTCCATGAGGGAAAAAAACCCAACAGTA
TAAAGGGGGCACATTTATTGTCACTGTTCCAAATGTACAAAAAAAATTAGAAAATAACCCCCCA
ACTCAATTCCCCCCACCCCTACCACATTCTTCCCAACACAAATAATTTTCTCCCCAAACCACAA
ACATAAACTGGTCCTGGTATTTTCAAACAGTGCAGCTAAGAAACAGTTTAGAGAAAATTTAACA
GGATTCAGAGTATATCCATTCTGTCCTCTCTGATGGTTTTGCTTTCTCTGGTGTAAGAGTCCTT
TTATAAAGTGGTGCATTTGGCTGTTGCTTTAGAGGTCCTCTTGTGCCTTCTTCTTCTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001011957	(Get FASTA)	NCBI Sequence Viewer
	NP_001417006	(Get FASTA)	NCBI Sequence Viewer
	XP_006234893	(Get FASTA)	NCBI Sequence Viewer
	XP_006234894	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH84693	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000101184
	ENSRNOP00000102332
GenBank Protein	Q5XFX8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011957 ⟸ NM_001011957

- UniProtKB:

Q5XFX8 (UniProtKB/Swiss-Prot), A0A8L2UKQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEGTQEALSGKMRLLFTPAARTSLLMLRLNEAALRALQECQQQQVRPVIAFQGQRGYLRLPGPG
WSCLFSFIVSQCGQEGGGLDLVYQRLGRSGPNCLHCLGSLRERLTIWAAMDTIPAPLLAQEHLT
EGTRESESWQDSEDEPEGHPQMALQEVSDPLASNHEQSLPGSSSEPMAQWEVRNHTYLSNREPD
QPLPSSASQKRLDKKRSAPITTEEPEEKRPRALPLASSPLQGLSNQDSPEEQDWGQDADGDSRL
EQSLSVQSASESPSPEEVPDYLLQYSTIHSAEQQQAYEQDFETDYAEYRILHARVGAASQRFTE
LGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYSEEKRRCEYLHEKLSHIKGLILEFEEKN
RGS

hide sequence

RefSeq Acc Id:

XP_006234893 ⟸ XM_006234831

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEGTQEALSGKMRLLFTPAARTSLLMLRLNEAALRALQECQQQQVRPVIAFQGQRGYLRLPGPG
WSCLFSFIVSQCGQEGGGLDLVYQRLGRSGPNCLHCLGSLRERLTIWAAMDTIPAPLLAQEHLT
EGTRESESWQDSEDEPEGHPQMALQEVSDPLASNHEQSLPGSSSEPMAQWEVRNHTYLSNREPD
QPLPSSASQKRLDKKRSAPITTEEPEEKRPRALPLASSPLQGLSNQDSPEEQDWGQDADGDSRL
EQSLSVQSASESPSPEEVPDYLLQYSTIHSAEQQQAYEQDFETDYAEYRILHARVGAASQRFTE
LGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKGAFSLQRYPSYSEEKRRCEYLHEKLSHIKGLIL
EFEEKNRGS

hide sequence

RefSeq Acc Id:	XP_006234894 ⟸ XM_006234832
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2UKQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEKGLGEVRPVIAFQGQRGYLRLPGPGWSCLFSFIVSQCGQEGGGLDLVYQRLGRSGPNCLHC LGSLRERLTIWAAMDTIPAPLLAQEHLTEGTRESESWQDSEDEPEGHPQMALQEVSDPLASNHE QSLPGSSSEPMAQWEVRNHTYLSNREPDQPLPSSASQKRLDKKRSAPITTEEPEEKRPRALPLA SSPLQGLSNQDSPEEQDWGQDADGDSRLEQSLSVQSASESPSPEEVPDYLLQYSTIHSAEQQQA YEQDFETDYAEYRILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKGAFSL QRYPSYSEEKRRCEYLHEKLSHIKGLILEFEEKNRGS hide sequence

Ensembl Acc Id:

ENSRNOP00000031619 ⟸ ENSRNOT00000036823

Ensembl Acc Id:

ENSRNOP00000085076 ⟸ ENSRNOT00000105807

Ensembl Acc Id:

ENSRNOP00000101184 ⟸ ENSRNOT00000140394

Ensembl Acc Id:

ENSRNOP00000102332 ⟸ ENSRNOT00000133076

Protein Domains

OCEL

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XFX8-F1-model_v2	AlphaFold	Q5XFX8	1-387	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309917	AgrOrtholog
BioCyc Gene	G2FUF-48129	BioCyc
Ensembl Genes	ENSRNOG00000022868	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000133076	ENTREZGENE
	ENSRNOT00000140394	ENTREZGENE
Gene3D-CATH	6.10.140.340	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7107022	IMAGE-MGC_LOAD
InterPro	ELL/occludin	UniProtKB/Swiss-Prot
	ELL_N	UniProtKB/Swiss-Prot
	Occludin_ELL	UniProtKB/Swiss-Prot
KEGG Report	rno:296102	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105822	IMAGE-MGC_LOAD
NCBI Gene	296102	ENTREZGENE
PANTHER	PTHR23288	UniProtKB/Swiss-Prot
	PTHR23288:SF18	UniProtKB/Swiss-Prot
Pfam	ELL	UniProtKB/Swiss-Prot
	Occludin_ELL	UniProtKB/Swiss-Prot
PhenoGen	Ell3	PhenoGen
PROSITE	OCEL	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000022868	RatGTEx
Superfamily-SCOP	occludin/ELL-like	UniProtKB/Swiss-Prot
UniProt	A0A8I6A363	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UKQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LCL2_RAT	UniProtKB/TrEMBL
	A0ABK0LLR3_RAT	UniProtKB/TrEMBL
	ELL3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-27	Ell3	elongation factor for RNA polymerase II 3	Ell3	elongation factor RNA polymerase II-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Ell3	elongation factor RNA polymerase II-like 3	Ell3_predicted	elongation factor RNA polymerase II-like 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ell3_predicted	elongation factor RNA polymerase II-like 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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