Zfp638 (zinc finger protein 638) - Rat Genome Database

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Gene: Zfp638 (zinc finger protein 638) Rattus norvegicus
Analyze
Symbol: Zfp638
Name: zinc finger protein 638
RGD ID: 1309746
Description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF638 (zinc finger protein 638); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC312491; Zfml; zinc finger, matrin-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,913,528 - 118,032,644 (+)NCBIGRCr8
mRatBN7.24116,355,934 - 116,475,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,402,428 - 116,479,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,884,197 - 121,956,420 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,659,372 - 117,731,596 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,273,128 - 116,345,350 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,555,185 - 115,690,272 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,601,661 - 115,690,272 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,142,528 - 180,278,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,113,122 - 118,190,703 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14118,357,602 - 118,430,382 (+)NCBI
Celera4105,395,168 - 105,472,557 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
clobetasol  (ISO)
clorgyline  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hypochlorous acid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
lead(0)  (ISO)
levonorgestrel  (ISO)
methamphetamine  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
testosterone  (ISO)
testosterone undecanoate  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Zfp638
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,913,528 - 118,032,644 (+)NCBIGRCr8
mRatBN7.24116,355,934 - 116,475,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,402,428 - 116,479,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,884,197 - 121,956,420 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,659,372 - 117,731,596 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,273,128 - 116,345,350 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,555,185 - 115,690,272 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,601,661 - 115,690,272 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,142,528 - 180,278,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,113,122 - 118,190,703 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14118,357,602 - 118,430,382 (+)NCBI
Celera4105,395,168 - 105,472,557 (+)NCBICelera
Cytogenetic Map4q34NCBI
ZNF638
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38271,331,782 - 71,435,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl271,276,561 - 71,435,069 (+)EnsemblGRCh38hg38GRCh38
GRCh37271,558,912 - 71,662,191 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,412,397 - 71,515,697 (+)NCBINCBI36Build 36hg18NCBI36
Build 34271,470,548 - 71,573,837NCBI
Celera271,409,609 - 71,512,927 (+)NCBICelera
Cytogenetic Map2p13.2NCBI
HuRef271,295,951 - 71,399,250 (+)NCBIHuRef
CHM1_1271,487,646 - 71,591,542 (+)NCBICHM1_1
T2T-CHM13v2.0271,342,787 - 71,445,995 (+)NCBIT2T-CHM13v2.0
Zfp638
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,844,050 - 83,963,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,844,091 - 83,966,532 (+)EnsemblGRCm39 Ensembl
GRCm38683,867,068 - 83,986,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,867,109 - 83,989,550 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,864,347 - 83,936,865 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,880,025 - 83,952,519 (+)NCBIMGSCv36mm8
Celera685,897,306 - 85,969,475 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map636.06NCBI
Znf638
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,991,605 - 14,056,174 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,991,362 - 14,122,269 (-)NCBIChiLan1.0ChiLan1.0
ZNF638
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21254,957,080 - 55,112,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A54,959,823 - 55,115,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A71,321,110 - 71,476,737 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A72,821,449 - 72,976,090 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,878,675 - 72,976,090 (+)Ensemblpanpan1.1panPan2
ZNF638
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,251,517 - 51,318,758 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,251,520 - 51,318,590 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1750,899,590 - 50,980,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01752,123,139 - 52,203,868 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1752,123,137 - 52,260,229 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11751,129,252 - 51,210,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01751,196,088 - 51,277,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01751,770,559 - 51,851,675 (-)NCBIUU_Cfam_GSD_1.0
Znf638
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,180,741 - 13,250,244 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649115,320,731 - 15,390,875 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649115,321,070 - 15,390,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF638
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,268,614 - 71,424,234 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,284,276 - 71,424,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2374,712,136 - 74,852,072 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF638
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11435,734,285 - 35,886,092 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1435,734,293 - 35,832,832 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604576,144,070 - 76,296,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf638
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247622,185,257 - 2,245,689 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247622,185,000 - 2,301,012 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp638
422 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000019617
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat

Markers in Region
AI323587  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,415,730 - 116,415,848 (+)MAPPERmRatBN7.2
Rnor_6.04115,626,203 - 115,626,320NCBIRnor6.0
Rnor_5.04180,213,533 - 180,213,650UniSTSRnor5.0
RGSC_v3.44118,126,251 - 118,126,368UniSTSRGSC3.4
Celera4105,408,463 - 105,408,580UniSTS
Cytogenetic Map4q34UniSTS
RH45151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,474,740 - 116,474,976 (+)MAPPERmRatBN7.2
Rnor_6.04115,685,170 - 115,685,405NCBIRnor6.0
Rnor_5.04180,273,077 - 180,273,312UniSTSRnor5.0
RGSC_v3.44118,185,601 - 118,185,836UniSTSRGSC3.4
Celera4105,467,455 - 105,467,690UniSTS
Cytogenetic Map4q34UniSTS
UniSTS:479305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,467,421 - 116,468,021 (+)MAPPERmRatBN7.2
Rnor_6.04115,677,852 - 115,678,451NCBIRnor6.0
Rnor_5.04180,265,759 - 180,266,358UniSTSRnor5.0
RGSC_v3.44118,178,283 - 118,178,882UniSTSRGSC3.4
Celera4105,460,133 - 105,460,732UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019617   ⟹   ENSRNOP00000019617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,402,428 - 116,479,845 (+)Ensembl
Rnor_6.0 Ensembl4115,601,661 - 115,690,272 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100312   ⟹   ENSRNOP00000085387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,402,428 - 116,473,122 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109348   ⟹   ENSRNOP00000094421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,402,428 - 116,479,845 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116644   ⟹   ENSRNOP00000089064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,402,428 - 116,468,975 (+)Ensembl
RefSeq Acc Id: NM_001395046   ⟹   NP_001381975
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,960,051 - 118,032,644 (+)NCBI
mRatBN7.24116,402,450 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_006236749   ⟹   XP_006236811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
Rnor_6.04115,555,185 - 115,685,480 (+)NCBI
Rnor_5.04180,142,528 - 180,278,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236750   ⟹   XP_006236812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,934 - 116,474,806 (+)NCBI
Rnor_6.04115,555,185 - 115,685,480 (+)NCBI
Rnor_5.04180,142,528 - 180,278,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236751   ⟹   XP_006236813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
Rnor_6.04115,555,185 - 115,685,480 (+)NCBI
Rnor_5.04180,142,528 - 180,278,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236753   ⟹   XP_006236815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,934 - 116,474,806 (+)NCBI
Rnor_6.04115,555,185 - 115,685,480 (+)NCBI
Rnor_5.04180,142,528 - 180,278,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236754   ⟹   XP_006236816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,959,985 - 118,032,644 (+)NCBI
mRatBN7.24116,402,384 - 116,474,806 (+)NCBI
Rnor_6.04115,601,635 - 115,685,480 (+)NCBI
Rnor_5.04180,142,528 - 180,278,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107594   ⟹   XP_038963522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_039107595   ⟹   XP_038963523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_039107596   ⟹   XP_038963524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,960,019 - 118,032,644 (+)NCBI
mRatBN7.24116,402,408 - 116,474,806 (+)NCBI
RefSeq Acc Id: XM_039107597   ⟹   XP_038963525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_039107598   ⟹   XP_038963526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_039107599   ⟹   XP_038963527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,024,843 (+)NCBI
mRatBN7.24116,355,934 - 116,467,239 (+)NCBI
RefSeq Acc Id: XM_039107600   ⟹   XP_038963528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
mRatBN7.24116,355,935 - 116,475,051 (+)NCBI
RefSeq Acc Id: XM_063286054   ⟹   XP_063142124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,960,053 - 118,032,644 (+)NCBI
RefSeq Acc Id: XM_063286055   ⟹   XP_063142125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,960,053 - 118,032,644 (+)NCBI
RefSeq Acc Id: XM_063286056   ⟹   XP_063142126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,959,999 - 118,032,644 (+)NCBI
RefSeq Acc Id: XM_063286057   ⟹   XP_063142127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,960,133 - 118,032,644 (+)NCBI
RefSeq Acc Id: XM_063286058   ⟹   XP_063142128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,025,414 (+)NCBI
RefSeq Acc Id: XM_063286059   ⟹   XP_063142129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
RefSeq Acc Id: XM_063286060   ⟹   XP_063142130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,913,528 - 118,032,644 (+)NCBI
RefSeq Acc Id: XP_006236811   ⟸   XM_006236749
- Peptide Label: isoform X1
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236813   ⟸   XM_006236751
- Peptide Label: isoform X3
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236812   ⟸   XM_006236750
- Peptide Label: isoform X2
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236815   ⟸   XM_006236753
- Peptide Label: isoform X5
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236816   ⟸   XM_006236754
- Peptide Label: isoform X8
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019617   ⟸   ENSRNOT00000019617
RefSeq Acc Id: XP_038963527   ⟸   XM_039107599
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038963525   ⟸   XM_039107597
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038963526   ⟸   XM_039107598
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038963522   ⟸   XM_039107594
- Peptide Label: isoform X4
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963528   ⟸   XM_039107600
- Peptide Label: isoform X6
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963523   ⟸   XM_039107595
- Peptide Label: isoform X7
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963524   ⟸   XM_039107596
- Peptide Label: isoform X8
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089064   ⟸   ENSRNOT00000116644
Ensembl Acc Id: ENSRNOP00000085387   ⟸   ENSRNOT00000100312
Ensembl Acc Id: ENSRNOP00000094421   ⟸   ENSRNOT00000109348
RefSeq Acc Id: NP_001381975   ⟸   NM_001395046
- UniProtKB: D4A0U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142130   ⟸   XM_063286060
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063142129   ⟸   XM_063286059
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063142128   ⟸   XM_063286058
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063142126   ⟸   XM_063286056
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063142124   ⟸   XM_063286054
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063142125   ⟸   XM_063286055
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AN40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142127   ⟸   XM_063286057
- Peptide Label: isoform X14
Protein Domains
Matrin-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0U3-F1-model_v2 AlphaFold D4A0U3 1-1875 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693190
Promoter ID:EPDNEW_R3714
Type:initiation region
Name:Zfp638_1
Description:zinc finger protein 638
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04115,601,689 - 115,601,749EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309746 AgrOrtholog
BioCyc Gene G2FUF-43984 BioCyc
Ensembl Genes ENSRNOG00000014501 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019617.6 UniProtKB/TrEMBL
  ENSRNOT00000100312.1 UniProtKB/TrEMBL
  ENSRNOT00000109348.1 UniProtKB/TrEMBL
  ENSRNOT00000116644.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
  ZNF638_RRM1/2 UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_matrin UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
NCBI Gene 312491 ENTREZGENE
PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED UniProtKB/TrEMBL
  PTHR15592:SF1 UniProtKB/TrEMBL
Pfam zf-C2H2_jaz UniProtKB/TrEMBL
PhenoGen Zfp638 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
  ZF_MATRIN UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014501 RatGTEx
SMART RRM UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6A6F3_RAT UniProtKB/TrEMBL
  A0A8I6AN40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GDA8_RAT UniProtKB/TrEMBL
  D4A0U3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-13 Zfp638  zinc finger protein 638  Zfml  zinc finger, matrin-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfml  zinc finger, matrin-like   Zfml_predicted  zinc finger, matrin-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfml_predicted  zinc finger, matrin-like (predicted)      Symbol and Name status set to approved 70820 APPROVED