Matn4 (matrilin 4) - Rat Genome Database

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Gene: Matn4 (matrilin 4) Rattus norvegicus
Analyze
Symbol: Matn4
Name: matrilin 4
RGD ID: 1309732
Description: Predicted to enable calcium ion binding activity. Predicted to act upstream of or within response to axon injury. Predicted to be located in extracellular region. Predicted to be part of matrilin complex. Predicted to be active in extracellular matrix. Orthologous to human MATN4 (matrilin 4); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC296358; matrilin-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,539,966 - 173,554,984 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)EnsemblGRCr8
mRatBN7.23153,120,605 - 153,135,628 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,120,632 - 153,135,865 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3156,930,937 - 156,945,999 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,429,886 - 165,444,950 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,173,560 - 163,188,620 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,838,632 - 160,853,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,838,632 - 160,853,650 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,018,918 - 167,033,936 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43155,411,588 - 155,426,606 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3151,731,863 - 151,746,872 (-)NCBICelera
RGSC_v3.13155,317,623 - 155,333,183 (-)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19295126  


Genomics

Comparative Map Data
Matn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,539,966 - 173,554,984 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)EnsemblGRCr8
mRatBN7.23153,120,605 - 153,135,628 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,120,632 - 153,135,865 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3156,930,937 - 156,945,999 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,429,886 - 165,444,950 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,173,560 - 163,188,620 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,838,632 - 160,853,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,838,632 - 160,853,650 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,018,918 - 167,033,936 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43155,411,588 - 155,426,606 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3151,731,863 - 151,746,872 (-)NCBICelera
RGSC_v3.13155,317,623 - 155,333,183 (-)NCBI
Cytogenetic Map3q42NCBI
MATN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,293,450 - 45,308,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,293,445 - 45,312,469 (-)Ensemblhg38GRCh38
GRCh372043,922,090 - 43,937,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,355,501 - 43,367,645 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342043,355,500 - 43,367,645NCBI
Celera2040,630,630 - 40,645,500 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,663,603 - 40,678,691 (-)NCBIHuRef
CHM1_12043,824,634 - 43,839,730 (-)NCBICHM1_1
T2T-CHM13v2.02047,029,312 - 47,044,561 (-)NCBIT2T-CHM13v2.0
Matn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,231,313 - 164,247,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,231,313 - 164,247,080 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382164,389,393 - 164,405,160 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,389,393 - 164,405,160 (-)Ensemblmm10GRCm38
MGSCv372164,215,134 - 164,230,114 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362164,080,839 - 164,096,365 (-)NCBIMGSCv36mm8
Celera2170,322,881 - 170,340,767 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.16NCBI
Matn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,029,882 - 12,040,335 (+)Ensembl
ChiLan1.0NW_00495544512,027,626 - 12,040,589 (+)NCBIChiLan1.0ChiLan1.0
MATN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,027,064 - 51,045,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,020,501 - 51,038,551 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,624,565 - 41,642,914 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,714,786 - 42,733,210 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,714,786 - 42,733,162 (-)EnsemblpanPan2panpan1.1
MATN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,601,175 - 32,614,109 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,599,508 - 32,613,872 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2432,246,122 - 32,258,947 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02433,311,960 - 33,324,313 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,311,315 - 33,324,612 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,572,843 - 32,585,665 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,688,338 - 32,701,145 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,232,163 - 33,245,000 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Matn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,124,577 - 192,136,418 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,578,025 - 7,590,061 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,578,035 - 7,589,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MATN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,617,620 - 47,630,458 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11747,617,559 - 47,631,195 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,222,637 - 53,233,674 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MATN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,532,094 - 18,544,386 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605067,170,293 - 67,186,526 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Matn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,182,847 - 9,194,384 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247909,182,374 - 9,194,235 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Matn4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15153,562,877 - 153,575,047 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:59
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000018844
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat

Markers in Region
D3Got140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,122,034 - 153,122,181 (+)MAPPERmRatBN7.2
Rnor_6.03160,840,062 - 160,840,206NCBIRnor6.0
Rnor_5.03167,020,348 - 167,020,492UniSTSRnor5.0
RGSC_v3.43155,413,017 - 155,413,162RGDRGSC3.4
RGSC_v3.43155,413,018 - 155,413,162UniSTSRGSC3.4
Celera3151,733,293 - 151,733,437UniSTS
RGSC_v3.13155,319,054 - 155,319,198RGD
RH 3.4 Map31425.0RGD
RH 3.4 Map31425.0UniSTS
Cytogenetic Map3q42UniSTS
AJ006140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,120,661 - 153,120,756 (+)MAPPERmRatBN7.2
Rnor_6.03160,838,689 - 160,838,783NCBIRnor6.0
Rnor_5.03167,018,975 - 167,019,069UniSTSRnor5.0
RGSC_v3.43155,411,645 - 155,411,739UniSTSRGSC3.4
Celera3151,731,920 - 151,732,014UniSTS
Cytogenetic Map3q42UniSTS
RH143189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,120,682 - 153,120,877 (+)MAPPERmRatBN7.2
Rnor_6.03160,838,710 - 160,838,904NCBIRnor6.0
Rnor_5.03167,018,996 - 167,019,190UniSTSRnor5.0
RGSC_v3.43155,411,666 - 155,411,860UniSTSRGSC3.4
Celera3151,731,941 - 151,732,135UniSTS
RH 3.4 Map31422.9UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 132 81 80 49 36 49 6 289 135 9 110 81 91 31 6 6

Sequence


Ensembl Acc Id: ENSRNOT00000018844   ⟹   ENSRNOP00000018844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)Ensembl
mRatBN7.2 Ensembl3153,120,632 - 153,135,821 (-)Ensembl
Rnor_6.0 Ensembl3160,838,632 - 160,853,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101725   ⟹   ENSRNOP00000082334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)Ensembl
mRatBN7.2 Ensembl3153,120,762 - 153,135,865 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106259   ⟹   ENSRNOP00000085435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)Ensembl
mRatBN7.2 Ensembl3153,120,762 - 153,135,865 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130912   ⟹   ENSRNOP00000103044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3173,540,010 - 173,554,984 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158400   ⟹   ENSRNOP00000107117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3173,539,966 - 173,554,984 (-)Ensembl
RefSeq Acc Id: NM_001106539   ⟹   NP_001100009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83173,539,966 - 173,554,984 (-)NCBI
mRatBN7.23153,120,605 - 153,135,628 (-)NCBI
Rnor_6.03160,838,632 - 160,853,650 (-)NCBI
Rnor_5.03167,018,918 - 167,033,936 (-)NCBI
RGSC_v3.43155,411,588 - 155,426,606 (-)RGD
Celera3151,731,863 - 151,746,872 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100009 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96529 (Get FASTA)   NCBI Sequence Viewer  
  EDL96530 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018844
  ENSRNOP00000018844.7
  ENSRNOP00000082334.1
  ENSRNOP00000085435.1
  ENSRNOP00000103044.1
  ENSRNOP00000107117.1
RefSeq Acc Id: NP_001100009   ⟸   NM_001106539
- Peptide Label: precursor
- UniProtKB: D3ZMS3 (UniProtKB/TrEMBL),   A6JX80 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018844   ⟸   ENSRNOT00000018844
Ensembl Acc Id: ENSRNOP00000082334   ⟸   ENSRNOT00000101725
Ensembl Acc Id: ENSRNOP00000085435   ⟸   ENSRNOT00000106259
Ensembl Acc Id: ENSRNOP00000103044   ⟸   ENSRNOT00000130912
Ensembl Acc Id: ENSRNOP00000107117   ⟸   ENSRNOT00000158400
Protein Domains
VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZMS3-F1-model_v2 AlphaFold D3ZMS3 1-624 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309732 AgrOrtholog
BioCyc Gene G2FUF-46861 BioCyc
Ensembl Genes ENSRNOG00000014021 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018844 ENTREZGENE
  ENSRNOT00000018844.8 UniProtKB/TrEMBL
  ENSRNOT00000101725.2 UniProtKB/TrEMBL
  ENSRNOT00000106259.2 UniProtKB/TrEMBL
  ENSRNOT00000130912.1 UniProtKB/TrEMBL
  ENSRNOT00000158400.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.30 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ECM_Assembly_Org UniProtKB/TrEMBL
  EG-like_dom UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  Matrilin_cc_sf UniProtKB/TrEMBL
  Matrilin_coiled-coil_trimer UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:296358 UniProtKB/TrEMBL
NCBI Gene 296358 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  PTHR24020:SF14 UniProtKB/TrEMBL
Pfam FXa_inhibition UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Matn4 PhenoGen
PRINTS VWFADOMAIN UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014021 RatGTEx
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF58002 UniProtKB/TrEMBL
UniProt A0A8I6A1D0_RAT UniProtKB/TrEMBL
  A0A8I6G9C5_RAT UniProtKB/TrEMBL
  A0ABK0L9S0_RAT UniProtKB/TrEMBL
  A0ABK0LRG0_RAT UniProtKB/TrEMBL
  A6JX80 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Matn4  matrilin 4   Matn4_predicted  matrilin 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Matn4_predicted  matrilin 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED