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Gene: Iftap (intraflagellar transport associated protein) Rattus norvegicus

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Symbol:

Iftap

Name:

intraflagellar transport associated protein

RGD ID:

1309730

Description:

Predicted to enable intraciliary transport particle A binding activity. Predicted to be involved in acrosome reaction and spermatogenesis. Predicted to act upstream of or within fertilization. Predicted to be active in 9+0 non-motile cilium and cytosol. Orthologous to human IFTAP (intraflagellar transport associated protein); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC295952; LOC295952; RGD1309730; similar to RIKEN cDNA B230118H07; uncharacterized protein C11orf74 homolog; uncharacterized protein LOC295952

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	108,242,105 - 108,361,607 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	108,267,132 - 108,361,573 (-)	Ensembl				GRCr8
mRatBN7.2	3	87,812,068 - 87,906,517 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	87,817,408 - 87,906,547 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	91,302,986 - 91,397,385 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	99,902,007 - 99,996,404 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	97,734,261 - 97,828,658 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	91,086,186 - 91,195,981 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	91,086,186 - 91,195,981 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	97,747,219 - 97,855,462 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	86,659,453 - 86,769,728 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	86,918,911 - 87,012,704 (-)	NCBI		Celera
RGSC_v3.1	3	86,555,862 - 86,570,765 (-)	NCBI
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium dichloride (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

indole-3-methanol (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

sodium arsenite (ISO)

sulindac (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

tolcapone (EXP)

topotecan (EXP)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome reaction (IBA,ISO)

fertilization (ISO)

spermatogenesis (IBA,ISO)

Cellular Component

9+0 non-motile cilium (IBA,ISO)

cytosol (IBA,ISO)

Molecular Function

intraciliary transport particle A binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:26703212	PMID:30476139	PMID:30521625

Genomics

Comparative Map Data

Iftap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	108,242,105 - 108,361,607 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	108,267,132 - 108,361,573 (-)	Ensembl				GRCr8
mRatBN7.2	3	87,812,068 - 87,906,517 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	87,817,408 - 87,906,547 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	91,302,986 - 91,397,385 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	99,902,007 - 99,996,404 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	97,734,261 - 97,828,658 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	91,086,186 - 91,195,981 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	91,086,186 - 91,195,981 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	97,747,219 - 97,855,462 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	86,659,453 - 86,769,728 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	86,918,911 - 87,012,704 (-)	NCBI		Celera
RGSC_v3.1	3	86,555,862 - 86,570,765 (-)	NCBI
Cytogenetic Map	3	q31	NCBI

IFTAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	36,594,502 - 36,659,272 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	36,594,369 - 36,675,695 (+)	Ensembl			hg38	GRCh38
GRCh37	11	36,616,052 - 36,680,822 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	36,572,669 - 36,637,393 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	36,768,524 - 36,833,247 (+)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI
HuRef	11	36,318,827 - 36,383,623 (+)	NCBI		HuRef
CHM1_1	11	36,614,729 - 36,679,528 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	36,737,675 - 36,802,458 (+)	NCBI		T2T-CHM13v2.0

Iftap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	101,391,124 - 101,459,376 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	101,391,126 - 101,479,877 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	101,560,779 - 101,629,031 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	101,560,781 - 101,649,532 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	101,400,938 - 101,469,143 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	101,361,620 - 101,429,825 (-)	NCBI		MGSCv36	mm8
Celera	2	102,785,023 - 102,853,977 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	53.83	NCBI

Iftap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	9,804,075 - 9,851,434 (-)	Ensembl
ChiLan1.0	NW_004955422	9,804,012 - 9,867,580 (-)	NCBI	ChiLan1.0	ChiLan1.0

IFTAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	38,808,671 - 38,871,686 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	38,813,337 - 38,876,353 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	36,560,918 - 36,623,870 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	36,433,550 - 36,496,487 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	36,433,630 - 36,496,483 (+)	Ensembl			panPan2	panpan1.1

IFTAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	31,553,965 - 31,618,147 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	31,556,023 - 31,618,123 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	31,161,267 - 31,225,435 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	32,164,548 - 32,228,462 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	32,164,557 - 32,228,377 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	31,734,611 - 31,798,476 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	31,318,922 - 31,382,825 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	31,956,075 - 32,020,030 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Iftap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	28,615,241 - 28,680,414 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	1,747,525 - 1,805,194 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	1,746,762 - 1,805,191 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFTAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	24,476,321 - 24,531,368 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	24,477,084 - 24,551,690 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IFTAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	28,356,363 - 28,649,661 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	28,586,378 - 28,646,330 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	125,721,128 - 125,790,037 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Iftap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	10,604,254 - 10,678,224 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	10,604,914 - 10,678,207 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Iftap
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	79,374,345 - 79,447,633 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Iftap
741 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	59
Count of miRNA genes:	51
Interacting mature miRNAs:	54
Transcripts:	ENSRNOT00000056935
Prediction methods:	Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D3Rat173

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	87,900,194 - 87,900,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	91,189,659 - 91,189,813	NCBI	Rnor6.0
Rnor_5.0	3	97,849,140 - 97,849,294	UniSTS	Rnor5.0
RGSC_v3.4	3	86,762,632 - 86,762,786	UniSTS	RGSC3.4
RGSC_v3.4	3	86,762,631 - 86,762,786	RGD	RGSC3.4
Celera	3	87,006,408 - 87,006,562	UniSTS
RGSC_v3.1	3	86,659,060 - 86,659,214	RGD
RH 3.4 Map	3	713.1	UniSTS
RH 3.4 Map	3	713.1	RGD
RH 2.0 Map	3	453.1	RGD
SHRSP x BN Map	3	46.1898	RGD
Cytogenetic Map	3	q31	UniSTS

D3Got38

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	88,044,983 - 88,045,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	91,333,504 - 91,333,763	NCBI	Rnor6.0
Rnor_6.0	3	91,145,834 - 91,146,093	NCBI	Rnor6.0
Rnor_5.0	3	97,992,255 - 97,992,514	UniSTS	Rnor5.0
Rnor_5.0	3	97,805,848 - 97,806,107	UniSTS	Rnor5.0
RGSC_v3.4	3	86,908,881 - 86,909,141	RGD	RGSC3.4
RGSC_v3.4	3	86,908,882 - 86,909,141	UniSTS	RGSC3.4
Celera	3	87,151,720 - 87,151,979	UniSTS
RGSC_v3.1	3	86,805,310 - 86,805,569	RGD
RH 3.4 Map	3	669.9	UniSTS
RH 3.4 Map	3	669.9	RGD
RH 2.0 Map	3	459.3	RGD
Cytogenetic Map	3	q31	UniSTS

Rag2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	87,906,536 - 87,907,242 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	87,906,902 - 87,907,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	91,196,367 - 91,197,149	NCBI	Rnor6.0
Rnor_6.0	3	91,196,810 - 91,197,149	NCBI	Rnor6.0
Rnor_5.0	3	97,856,291 - 97,856,630	UniSTS	Rnor5.0
Rnor_5.0	3	97,855,848 - 97,856,630	UniSTS	Rnor5.0
RGSC_v3.4	3	86,770,114 - 86,770,453	UniSTS	RGSC3.4
Celera	3	87,013,090 - 87,013,429	UniSTS
Cytogenetic Map	3	q31	UniSTS

UniSTS:259651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	3	87,011,896 - 87,013,491	UniSTS
Cytogenetic Map	3	q31	UniSTS

PMC196132P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	87,906,536 - 87,907,220 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	87,906,897 - 87,907,220 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	91,196,362 - 91,197,127	NCBI	Rnor6.0
Rnor_6.0	3	91,196,805 - 91,197,127	NCBI	Rnor6.0
Rnor_5.0	3	97,856,286 - 97,856,608	UniSTS	Rnor5.0
Rnor_5.0	3	97,855,843 - 97,856,608	UniSTS	Rnor5.0
RGSC_v3.4	3	86,770,109 - 86,770,431	UniSTS	RGSC3.4
Celera	3	87,013,085 - 87,013,407	UniSTS
Cytogenetic Map	3	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	165	91	90	59	85	59	6	348	184	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056935 ⟹ ENSRNOP00000053773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	108,272,479 - 108,361,573 (-)	Ensembl
mRatBN7.2 Ensembl	3	87,817,408 - 87,906,547 (-)	Ensembl
Rnor_6.0 Ensembl	3	91,086,186 - 91,195,981 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140635 ⟹ ENSRNOP00000099641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	108,267,132 - 108,348,600 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160521 ⟹ ENSRNOP00000107731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	108,267,132 - 108,361,573 (-)	Ensembl

RefSeq Acc Id:

NM_001106491 ⟹ NP_001099961

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,130 - 108,361,543 (-)	NCBI
mRatBN7.2	3	87,812,068 - 87,906,517 (-)	NCBI
Rnor_6.0	3	91,086,186 - 91,195,981 (-)	NCBI
Rnor_5.0	3	97,747,219 - 97,855,462 (-)	NCBI
RGSC_v3.4	3	86,659,453 - 86,769,728 (-)	RGD
Celera	3	86,918,911 - 87,012,704 (-)	RGD

Sequence:

show sequence

ACAGAAACATTGCAGGCTGTTTGACTGTAAGGACTCCAAAAGTGCGAAGTGACTAGATGGGCGC
CATGGTCACGGACAGCTAGGGAACGGGAGACAGACAGTACCGTCTGAAATATTCAGTCTCACCC
GTCAGCACTGCTTATGTTTCCTGACTCCAGAACAGCAAGTGCCCCATGGACTGCAGCTACGTAG
TGTGGGAGTTAACACTGGTTTGCACGAGTGGCCTTGTCAATTGGAATGCCTGCTCAAATACCGA
GGAGACCAGAGATAATGAGTGAAGATCAGTTAATGAAAGAAGTCTTGGATAAGTTTGTCAACTG
TCATGAGCAAACCTATGAAGAATTTCTGAGCACTTTTACTCATCTTTCAAAAGAGGATAATGTA
GCCAAAGGGGGAGCACATGGAATGAATTTATCAGAAAATACACTTACTGCTGAGAAATGGAATC
ACAAAATTGAATCGAATGGTCATCATTTTAGAAATAGAACCATCTTTCTTCACGATTCCTCCGA
ATGCTCAGAAGAGGACCAGATAGTGATCGATGAAGGCCAGAAAGTTGGCAGTTCCTTTCAAGGT
GATATGACCCGGGCAGGAAAGGTGAAGGTAGACAACTTCCTAGACTTAGAAGATGTGGACACGG
AGGAAGAGAGTAAGCCCCAGATGAACAAGGATTGGATGGTACTTCCAGGTGAGGTGGAACAGAG
TATAAGCATCAGTGCTCCTGCTTATGTTCCTTCTGTGGACCTGCCACTCACCTCTGAGGGGAAG
CCAACGCCCGCTGTGGGAAGAACTCAGACGCAAACTGAAGAGATACTTGGAGATGAAGTTCAGC
CATTCTTTCTTGATGAAGACTTTGATTATGACAATGTGACTCTCACTCCGAAGTTTACTGCTGG
AGAGATAGCAACCATCCAAGAGCTGGCCAAGCAAAAGAGAGTGGATACCAGTACCCACGTGTGC
GAACTGCATGACTGAGTCACCAGATGTCTCTGTGTCTACTTTTATTTTGTTCATAGTCAAACAA
CGTTAGAATAAAGCATATCCCAACTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063283299 ⟹ XP_063139369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,131 - 108,348,577 (-)	NCBI

RefSeq Acc Id:

XM_063283300 ⟹ XP_063139370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,131 - 108,361,607 (-)	NCBI

RefSeq Acc Id:

XM_063283301 ⟹ XP_063139371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,242,105 - 108,348,577 (-)	NCBI

RefSeq Acc Id:

XM_063283302 ⟹ XP_063139372

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,131 - 108,348,577 (-)	NCBI

RefSeq Acc Id:

XM_063283303 ⟹ XP_063139373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,277,774 - 108,348,577 (-)	NCBI

RefSeq Acc Id:

XM_063283304 ⟹ XP_063139374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,131 - 108,361,555 (-)	NCBI

RefSeq Acc Id:

XM_063283305 ⟹ XP_063139375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	108,267,131 - 108,348,577 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099961	(Get FASTA)	NCBI Sequence Viewer
	NP_001416105	(Get FASTA)	NCBI Sequence Viewer
	NP_001416106	(Get FASTA)	NCBI Sequence Viewer
	NP_001416107	(Get FASTA)	NCBI Sequence Viewer
	NP_001416108	(Get FASTA)	NCBI Sequence Viewer
	XP_063139369	(Get FASTA)	NCBI Sequence Viewer
	XP_063139370	(Get FASTA)	NCBI Sequence Viewer
	XP_063139371	(Get FASTA)	NCBI Sequence Viewer
	XP_063139372	(Get FASTA)	NCBI Sequence Viewer
	XP_063139373	(Get FASTA)	NCBI Sequence Viewer
	XP_063139374	(Get FASTA)	NCBI Sequence Viewer
	XP_063139375	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66899	(Get FASTA)	NCBI Sequence Viewer
	EDL79620	(Get FASTA)	NCBI Sequence Viewer
	EDL79621	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053773.6
	ENSRNOP00000099641
	ENSRNOP00000099641.1
	ENSRNOP00000107731
	ENSRNOP00000107731.1

RefSeq Acc Id:

NP_001099961 ⟸ NM_001106491

- UniProtKB:

B2RYT8 (UniProtKB/TrEMBL), A6HNM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPAQIPRRPEIMSEDQLMKEVLDKFVNCHEQTYEEFLSTFTHLSKEDNVAKGGAHGMNLSENTL
TAEKWNHKIESNGHHFRNRTIFLHDSSECSEEDQIVIDEGQKVGSSFQGDMTRAGKVKVDNFLD
LEDVDTEEESKPQMNKDWMVLPGEVEQSISISAPAYVPSVDLPLTSEGKPTPAVGRTQTQTEEI
LGDEVQPFFLDEDFDYDNVTLTPKFTAGEIATIQELAKQKRVDTSTHVCELHD

hide sequence

Ensembl Acc Id:

ENSRNOP00000053773 ⟸ ENSRNOT00000056935

RefSeq Acc Id:	XP_063139371 ⟸ XM_063283301
- Peptide Label:	isoform X3
- UniProtKB:	F1LQ29 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139370 ⟸ XM_063283300
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139374 ⟸ XM_063283304
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063139375 ⟸ XM_063283305
- Peptide Label:	isoform X7
- UniProtKB:	A6HNM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139369 ⟸ XM_063283299
- Peptide Label:	isoform X1
- UniProtKB:	B2RYT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139372 ⟸ XM_063283302
- Peptide Label:	isoform X4
- UniProtKB:	F1LQ29 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139373 ⟸ XM_063283303
- Peptide Label:	isoform X5
- UniProtKB:	F1LQ29 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099641 ⟸ ENSRNOT00000140635

Ensembl Acc Id:

ENSRNOP00000107731 ⟸ ENSRNOT00000160521

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LQ29-F1-model_v2	AlphaFold	F1LQ29	1-244	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692241

Promoter ID:

EPDNEW_R2765

Type:

multiple initiation site

Name:

RGD1309730_1

Description:

similar to RIKEN cDNA B230118H07

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	91,195,979 - 91,196,039	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309730	AgrOrtholog
BioCyc Gene	G2FUF-48613	BioCyc
Ensembl Genes	ENSRNOG00000037567	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056935.6	UniProtKB/TrEMBL
	ENSRNOT00000140635	ENTREZGENE
	ENSRNOT00000140635.1	UniProtKB/TrEMBL
	ENSRNOT00000160521	ENTREZGENE
	ENSRNOT00000160521.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6922132	IMAGE-MGC_LOAD
InterPro	C11orf74-like	UniProtKB/TrEMBL
KEGG Report	rno:295952	UniProtKB/TrEMBL
MGC_CLONE	MGC:188860	IMAGE-MGC_LOAD
NCBI Gene	295952	ENTREZGENE
PANTHER	INTRAFLAGELLAR TRANSPORT-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
	PTHR35543	UniProtKB/TrEMBL
Pfam	DUF5567	UniProtKB/TrEMBL
PhenoGen	Iftap	PhenoGen
RatGTEx	ENSRNOG00000037567	RatGTEx
UniProt	A0ABK0L9T8_RAT	UniProtKB/TrEMBL
	A0ABK0LAT9_RAT	UniProtKB/TrEMBL
	A6HNM0	ENTREZGENE, UniProtKB/TrEMBL
	A6HNM1	ENTREZGENE, UniProtKB/TrEMBL
	B2RYT8	ENTREZGENE, UniProtKB/TrEMBL
	F1LQ29	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-12-06	Iftap	intraflagellar transport associated protein	RGD1309730	similar to RIKEN cDNA B230118H07	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1309730	similar to RIKEN cDNA B230118H07	RGD1309730_predicted	similar to RIKEN cDNA B230118H07 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1309730_predicted	similar to RIKEN cDNA B230118H07 (predicted)	LOC295952_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC295952_predicted	similar to RIKEN cDNA B230118H07 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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