Cbln2 (cerebellin 2 precursor) - Rat Genome Database

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Gene: Cbln2 (cerebellin 2 precursor) Rattus norvegicus
Analyze
Symbol: Cbln2
Name: cerebellin 2 precursor
RGD ID: 1309715
Description: Predicted to be involved in maintenance of synapse structure; spontaneous synaptic transmission; and trans-synaptic signaling, modulating synaptic transmission. Predicted to act upstream of or within positive regulation of synapse assembly. Predicted to be located in extracellular space. Predicted to be part of trans-synaptic protein complex. Predicted to be active in glutamatergic synapse and synaptic cleft. Orthologous to human CBLN2 (cerebellin 2 precursor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; 7,12-dimethyltetraphene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cerebellin 2 precursor protein; cerebellin-2; cerebellin-like protein; LOC291388
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81882,215,210 - 82,222,648 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1882,215,220 - 82,222,648 (+)EnsemblGRCr8
mRatBN7.21879,940,412 - 79,948,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1879,942,590 - 79,947,855 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1882,046,159 - 82,052,634 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01882,718,231 - 82,724,706 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01880,553,853 - 80,560,326 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01883,775,568 - 83,783,841 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1883,777,665 - 83,782,930 (+)Ensemblrn6Rnor6.0
Rnor_5.01882,836,552 - 82,844,974 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41883,306,945 - 83,313,398 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1878,526,129 - 78,532,582 (+)NCBICelera
RGSC_v3.11883,380,394 - 83,386,848 (+)NCBI
Cytogenetic Map18q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:1850079   PMID:15702230   PMID:17331201   PMID:21356198   PMID:21410790   PMID:29691328   PMID:29784783   PMID:30287486   PMID:37355224  


Genomics

Comparative Map Data
Cbln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81882,215,210 - 82,222,648 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1882,215,220 - 82,222,648 (+)EnsemblGRCr8
mRatBN7.21879,940,412 - 79,948,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1879,942,590 - 79,947,855 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1882,046,159 - 82,052,634 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01882,718,231 - 82,724,706 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01880,553,853 - 80,560,326 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01883,775,568 - 83,783,841 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1883,777,665 - 83,782,930 (+)Ensemblrn6Rnor6.0
Rnor_5.01882,836,552 - 82,844,974 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41883,306,945 - 83,313,398 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1878,526,129 - 78,532,582 (+)NCBICelera
RGSC_v3.11883,380,394 - 83,386,848 (+)NCBI
Cytogenetic Map18q13NCBI
CBLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381872,536,681 - 72,638,521 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1872,534,118 - 72,638,521 (-)Ensemblhg38GRCh38
GRCh371870,203,916 - 70,211,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361868,354,895 - 68,362,542 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1867,055,763 - 67,063,568 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1866,922,467 - 66,930,272 (-)NCBIHuRef
CHM1_11870,199,133 - 70,206,942 (-)NCBICHM1_1
T2T-CHM13v2.01872,758,180 - 72,859,965 (-)NCBIT2T-CHM13v2.0
Cbln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391886,727,226 - 86,736,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1886,729,235 - 86,736,408 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381886,711,061 - 86,718,283 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1886,711,110 - 86,718,283 (+)Ensemblmm10GRCm38
MGSCv371886,882,440 - 86,887,675 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361886,847,241 - 86,852,476 (+)NCBIMGSCv36mm8
Celera1887,741,193 - 87,746,432 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1858.63NCBI
Cbln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540256,051,496 - 56,062,190 (-)Ensembl
ChiLan1.0NW_00495540256,052,340 - 56,062,190 (-)NCBIChiLan1.0ChiLan1.0
CBLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21790,056,212 - 90,158,086 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11875,748,835 - 75,850,709 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01865,906,154 - 66,010,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11869,196,248 - 69,201,563 (-)NCBIPanPan1.1PanPan1.1panPan2
CBLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116,378,153 - 6,384,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl16,376,777 - 6,382,024 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha17,388,688 - 7,396,695 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.016,193,042 - 6,201,050 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl16,191,627 - 6,199,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.116,230,689 - 6,238,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.016,185,390 - 6,193,399 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.016,403,350 - 6,411,358 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cbln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494420,244,240 - 20,254,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936756567,710 - 575,205 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936756567,906 - 576,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1150,973,622 - 150,980,757 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11150,966,003 - 150,980,757 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21167,191,334 - 167,198,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,270,551 - 7,280,233 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl187,274,754 - 7,278,714 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606018,569,292 - 18,589,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248068,371,995 - 8,380,059 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248068,371,966 - 8,381,908 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cbln2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11545,898,035 - 45,906,341 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cbln2
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:189
Count of miRNA genes:129
Interacting mature miRNAs:166
Transcripts:ENSRNOT00000018682
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)186584644786134022Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185449080186134022Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185782524385493247Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)186144685386134022Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
70172Eae15Experimental allergic encephalomyelitis QTL 150.001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)187948431184129249Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
7794793Mcs34Mammary carcinoma susceptibility QTL 341.54mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)186563556785897775Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 10 61 146 72 71 43 85 43 6 294 176 11 121 57 63 28 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018682   ⟹   ENSRNOP00000018682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1882,215,220 - 82,222,648 (+)Ensembl
mRatBN7.2 Ensembl1879,942,590 - 79,947,855 (+)Ensembl
Rnor_6.0 Ensembl1883,777,665 - 83,782,930 (+)Ensembl
RefSeq Acc Id: NM_001012740   ⟹   NP_001012758
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81882,216,203 - 82,222,648 (+)NCBI
mRatBN7.21879,941,412 - 79,947,855 (+)NCBI
Rnor_6.01883,776,477 - 83,782,930 (+)NCBI
Rnor_5.01882,836,552 - 82,844,974 (+)NCBI
RGSC_v3.41883,306,945 - 83,313,398 (+)RGD
Celera1878,526,129 - 78,532,582 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255023   ⟹   XP_006255085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81882,215,210 - 82,222,648 (+)NCBI
mRatBN7.21879,940,412 - 79,948,766 (+)NCBI
Rnor_6.01883,775,568 - 83,783,841 (+)NCBI
Rnor_5.01882,836,552 - 82,844,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096623   ⟹   XP_038952551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81882,215,210 - 82,222,648 (+)NCBI
mRatBN7.21879,940,412 - 79,948,766 (+)NCBI
RefSeq Acc Id: XM_039096624   ⟹   XP_038952552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81882,216,526 - 82,222,648 (+)NCBI
mRatBN7.21879,941,745 - 79,948,766 (+)NCBI
RefSeq Acc Id: XR_005495996
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81882,215,210 - 82,222,648 (+)NCBI
mRatBN7.21879,940,869 - 79,948,766 (+)NCBI
RefSeq Acc Id: NP_001012758   ⟸   NM_001012740
- Peptide Label: precursor
- UniProtKB: Q5BJT3 (UniProtKB/Swiss-Prot),   P98087 (UniProtKB/Swiss-Prot),   A6K5N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255085   ⟸   XM_006255023
- Peptide Label: isoform X1
- UniProtKB: Q5BJT3 (UniProtKB/Swiss-Prot),   P98087 (UniProtKB/Swiss-Prot),   A6K5N0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018682   ⟸   ENSRNOT00000018682
RefSeq Acc Id: XP_038952551   ⟸   XM_039096623
- Peptide Label: isoform X1
- UniProtKB: P98087 (UniProtKB/Swiss-Prot),   Q5BJT3 (UniProtKB/Swiss-Prot),   A6K5N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952552   ⟸   XM_039096624
- Peptide Label: isoform X1
- UniProtKB: P98087 (UniProtKB/Swiss-Prot),   Q5BJT3 (UniProtKB/Swiss-Prot),   A6K5N0 (UniProtKB/TrEMBL)
Protein Domains
C1q

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P98087-F1-model_v2 AlphaFold P98087 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309715 AgrOrtholog
BioCyc Gene G2FUF-6723 BioCyc
Ensembl Genes ENSRNOG00000013654 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018682 ENTREZGENE
  ENSRNOT00000018682.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7315458 IMAGE-MGC_LOAD
InterPro C1q_dom UniProtKB/Swiss-Prot
  Cerebellin_Synaptic_Org UniProtKB/Swiss-Prot
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot
KEGG Report rno:291388 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109349 IMAGE-MGC_LOAD
NCBI Gene 291388 ENTREZGENE
PANTHER CEREBELLIN-2 UniProtKB/Swiss-Prot
  CEREBELLIN-RELATED UniProtKB/Swiss-Prot
Pfam C1q UniProtKB/Swiss-Prot
PhenoGen Cbln2 PhenoGen
PRINTS COMPLEMNTC1Q UniProtKB/Swiss-Prot
PROSITE C1Q UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013654 RatGTEx
SMART C1Q UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot
UniProt A6K5N0 ENTREZGENE, UniProtKB/TrEMBL
  CBLN2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5BJT3 ENTREZGENE
UniProt Secondary Q5BJT3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-08-29 Cbln2  cerebellin 2 precursor  Cbln2  cerebellin 2 precursor protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cbln2  cerebellin 2 precursor protein  Cbln2_predicted  cerebellin 2 precursor protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cbln2_predicted  cerebellin 2 precursor protein (predicted)      Symbol and Name status set to approved 70820 APPROVED