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Gene: Tmem175 (transmembrane protein 175) Rattus norvegicus

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Symbol:

Tmem175

Name:

transmembrane protein 175

RGD ID:

1309712

Description:

Predicted to enable arachidonate binding activity; potassium ion leak channel activity; and proton channel activity. Predicted to be involved in lysosome organization; monoatomic cation transmembrane transport; and neuron cellular homeostasis. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be active in endosome and lysosome. Orthologous to human TMEM175 (transmembrane protein 175); INTERACTS WITH acrylamide; bisphenol A; paracetamol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

endosomal/lysomomal potassium channel TMEM175; endosomal/lysosomal potassium channel TMEM175; endosomal/lysosomal proton channel TMEM175; LOC305623; potassium channel TMEM175; RGD1309712; similar to RIKEN cDNA 3010001K23 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM175 (transmembrane protein 175)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem175 (transmembrane protein 175)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmem175 (transmembrane protein 175)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM175 (transmembrane protein 175)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem175 (transmembrane protein 175)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	1,217,911 - 1,234,236 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	1,217,914 - 1,234,018 (-)	Ensembl				GRCr8
mRatBN7.2	14	1,073,410 - 1,089,764 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	1,073,523 - 1,089,819 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	973,404 - 989,349 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	2,275,182 - 2,291,127 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	971,877 - 987,822 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	2,083,745 - 2,100,006 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	2,083,712 - 2,100,005 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	2,078,799 - 2,095,561 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	1,614,529 - 1,630,636 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	1,112,847 - 1,128,959 (-)	NCBI		Celera
RGSC_v3.1	14	1,614,529 - 1,630,636 (-)	NCBI
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Bufotalin (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

dibutyl phthalate (ISO)

disulfiram (ISO)

doxorubicin (ISO)

fluoranthene (ISO)

folic acid (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lysosomal lumen pH elevation (IEA,ISO,ISS)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

neuron cellular homeostasis (IEA,ISO,ISS)

phagosome-lysosome fusion (IEA,ISO,ISS)

potassium ion transmembrane transport (IEA,ISO,ISS)

potassium ion transport (IEA)

proton transmembrane transport (IEA,ISO,ISS)

regulation of lysosomal lumen pH (IEA,ISO,ISS)

Cellular Component

endosome (IBA,IEA,ISO,ISS)

endosome membrane (IEA,ISO,ISS)

lysosomal membrane (IEA,ISO,ISS)

lysosome (IBA,IEA,ISO,ISS)

membrane (IEA)

Molecular Function

arachidonate binding (IEA,ISO,ISS)

potassium channel activity (IEA,ISO,ISS)

potassium ion leak channel activity (IBA,IEA,ISO,ISS)

protein binding (ISO)

proton channel activity (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:17897319	PMID:26317472	PMID:28193887	PMID:28723891	PMID:32799888

Genomics

Comparative Map Data

Tmem175
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	1,217,911 - 1,234,236 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	1,217,914 - 1,234,018 (-)	Ensembl				GRCr8
mRatBN7.2	14	1,073,410 - 1,089,764 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	1,073,523 - 1,089,819 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	973,404 - 989,349 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	2,275,182 - 2,291,127 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	971,877 - 987,822 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	2,083,745 - 2,100,006 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	2,083,712 - 2,100,005 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	2,078,799 - 2,095,561 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	1,614,529 - 1,630,636 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	1,112,847 - 1,128,959 (-)	NCBI		Celera
RGSC_v3.1	14	1,614,529 - 1,630,636 (-)	NCBI
Cytogenetic Map	14	p22	NCBI

TMEM175
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	932,460 - 958,656 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	932,168 - 958,741 (+)	Ensembl			hg38	GRCh38
GRCh37	4	926,248 - 952,444 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	916,262 - 942,444 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	863,168 - 889,353 (+)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	897,477 - 923,812 (+)	NCBI		HuRef
CHM1_1	4	925,472 - 952,228 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	930,532 - 956,764 (+)	NCBI		T2T-CHM13v2.0

Tmem175
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	108,777,649 - 108,795,636 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	108,777,636 - 108,796,648 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	108,629,779 - 108,647,770 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	108,629,770 - 108,648,782 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	109,058,829 - 109,076,789 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	108,870,304 - 108,887,565 (+)	NCBI		MGSCv36	mm8
Celera	5	105,751,308 - 105,769,349 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	53.24	NCBI

Tmem175
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	434,285 - 453,239 (+)	Ensembl
ChiLan1.0	NW_004955514	434,283 - 453,239 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM175
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	1,262,300 - 1,287,866 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	1,228,124 - 1,255,224 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	1,049,647 - 1,074,903 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	967,494 - 993,030 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	967,494 - 993,030 (+)	Ensembl			panPan2	panpan1.1

TMEM175
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	91,554,001 - 91,576,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	91,553,778 - 91,670,930 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	94,019,059 - 94,042,095 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	92,551,080 - 92,575,365 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	92,551,080 - 92,670,555 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	91,724,345 - 91,746,694 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	91,777,372 - 91,800,395 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	92,161,193 - 92,184,240 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem175
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	68,537,401 - 68,552,335 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	22,239,093 - 22,254,439 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	22,239,093 - 22,254,028 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM175
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	297,007 - 313,972 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	295,693 - 313,974 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM175
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,819,512 - 47,852,455 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,816,482 - 47,852,472 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	4,157,175 - 4,214,288 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem175
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	26,190,547 - 26,207,793 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624755	26,190,547 - 26,200,512 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem175
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	18,415,497 - 18,434,559 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmem175
81 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	23
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000000050
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	11334906	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	17877928	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat

Markers in Region

BI276490

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	1,073,550 - 1,073,706 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	2,083,790 - 2,083,945	NCBI	Rnor6.0
Rnor_5.0	14	2,079,333 - 2,079,488	UniSTS	Rnor5.0
RGSC_v3.4	14	1,614,574 - 1,614,729	UniSTS	RGSC3.4
Celera	14	1,112,892 - 1,113,047	UniSTS
Cytogenetic Map	14	p22	UniSTS

RH129524

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	1,217,411 - 1,217,621 (+)	Marker Load Pipeline
mRatBN7.2	14	1,073,006 - 1,073,216 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	2,083,246 - 2,083,455	NCBI	Rnor6.0
Rnor_5.0	14	2,078,789 - 2,078,998	UniSTS	Rnor5.0
RGSC_v3.4	14	1,614,030 - 1,614,239	UniSTS	RGSC3.4
Celera	14	1,112,348 - 1,112,557	UniSTS
Cytogenetic Map	14	p22	UniSTS

RH135170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	1,073,641 - 1,073,843 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	2,083,881 - 2,084,082	NCBI	Rnor6.0
Rnor_5.0	14	2,079,424 - 2,079,625	UniSTS	Rnor5.0
RGSC_v3.4	14	1,614,665 - 1,614,866	UniSTS	RGSC3.4
Celera	14	1,112,983 - 1,113,184	UniSTS
Cytogenetic Map	14	p22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000050 ⟹ ENSRNOP00000000050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	1,217,914 - 1,234,018 (-)	Ensembl
mRatBN7.2 Ensembl	14	1,073,523 - 1,089,819 (-)	Ensembl
Rnor_6.0 Ensembl	14	2,083,712 - 2,100,005 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094320 ⟹ ENSRNOP00000080137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	1,221,508 - 1,234,018 (-)	Ensembl
mRatBN7.2 Ensembl	14	1,077,103 - 1,089,819 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114727 ⟹ ENSRNOP00000082603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	1,217,914 - 1,234,018 (-)	Ensembl
mRatBN7.2 Ensembl	14	1,073,523 - 1,089,819 (-)	Ensembl

RefSeq Acc Id:

NM_001013991 ⟹ NP_001014013

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,911 - 1,234,018 (-)	NCBI
mRatBN7.2	14	1,073,506 - 1,089,613 (-)	NCBI
Rnor_6.0	14	2,083,745 - 2,099,852 (-)	NCBI
Rnor_5.0	14	2,078,799 - 2,095,561 (-)	NCBI
RGSC_v3.4	14	1,614,529 - 1,630,636 (-)	RGD
Celera	14	1,112,847 - 1,128,959 (-)	RGD

Sequence:

show sequence

CCCCAGAGCCCGCCGCTCGCGCCTGACGCCTCAAGCCCTTGTCTCTGCATCGAAATGGCTGAAG
TCTACAGGGTTGAAACATCCCTCTGATATGCTCAGAGCTACACTTCTTCCCAGGCTGCTGTGAC
AACTTGGTGACTCCACCATGTCCAGGCTCCAGGTCCAGGAGCAGGCAGTGGATTCCGAGGGAGA
CTCATCCCTATACAGGAGAGATGAGGAGGGGACACAGAGCTCCCACCGCATGCTGGGCTTTAGT
GATGCCTTACTATCCATCATCGCCACTGTCATGATCCTGCCTGTGACCCACACAGAGATCTCAC
CAGAACAGCAGTTTGACAAAAGTATACAGAAACTTCTAGCAACTAGGATTGCTGTCTACCTCAT
GACATTTCTAATCGTAACTGTGGCCTGGGCAGCACATACCAGATTGTTCCAGGTTGTTGGAAAA
ATAGATGATACACTTGCCTTGCTCAACCTGGCCTGTATGATGACCATCACCCTTCTGCCCTACA
CATTTTCGCTAATGGTAACATTCCCTGATGTGCCCCTGGGCATCTTCCTGTTCTGCATGTGTGT
GATTGCCATTGGATCTGTGCAGGCAATGATCGTGGGTTATGCCTTCCACTTCCCACATCTGCTG
AATCCACAAATCCAGTGCTCTACACATAGGGCCCTGTCCCGGCGGCACATTCTGCACCTAGTCC
TCCGTGGCCCAGCACTCTGTTTTGTTGCAGCTGTCTTTTCCCTCTTCTTCTTCCCCTTGTCATA
CCTGCTGATGGTGACTGTCATCTTCCTCCCTCACATCAGCAAGGCTACCACCTGGTGTAAAGAC
AAGTTTATGGGCCACAGGGAGTCTCCAGCTCACAATGTAGAGCCCTTCAGTATTGACCTGCATG
CGCCCCTCAGCAAAGAACGGGTGGAAGCTTTCAGTGACGGTGTCTATGCCATTGTGGCCACACT
CCTCATCTTGGACATCTGTGAGGACAATGTTCCGGATCCCAAGGATGTGCAACAGAAGTTCAGT
GGCAGCCTTGTGGCTGCCCTGGGTGCATATGGGCCACAGTTCCTGGCATACTTCGGCTCCTTCG
CCACAGTGGGTCTGCTCTGGTTTGCCCACCACTCACTCTTCCTGCATGTCCGGAAGGCTACACA
GACCATGGGGTTGTTCAACATACTGTCACTGGCCTTTGTGGGGGGCCTCCCTCTGGCCTACCAG
CAGACCTCGGCGTTTGCCCGGCAACCCCGTGATGAACTTGAGCGTGTGCGTGTCAGCTGTGCCA
TCATCTTCTTTGCCAGCATCTTCCAGTTTGCCATCTGGACTACAGCCCTGCTGCACCAGAGAGA
AACACTGCAGCCAGCTGTGCAGTTTGGTGGGCAGGAACATGCTTTCATGTTTGCCAAGCTCGCA
CTGTACCCCTGTGCCAGCCTGCTGGCCTTTGCCGCCACCTGCCTACTGAGTCGGTTCAGCACAG
CCATCTTCCACCTCATGCAGATTGCAGTGCCCTTTGCGTTCCTGTTGCTCCGGCTCCTGGTACG
CCTTGCCCTGGCAGGCCTTCAAGTCCTATGGGACCTCTGGCCAGAGCGTCCCCAACAAGACCAG
GGTGAACCCGAGACACAGTCCCAGCTCTTGCCTGCCTCCTGCTAATGCCAAGAAAGCCACTCCT
GCCTATCGTAGTCATACTGCAAAGGGTCTTGTGGAGATGTCTTAGTACAAGTTTATCGCGACAC
TGGAGTTGTGGATATATTGGCCCGAGTATTGTTTACACTGTGAAATATCAATATCTATTTCAAA
ACTATGAACATTGTTCACAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250558 ⟹ XP_006250620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,181 (-)	NCBI
mRatBN7.2	14	1,073,410 - 1,089,572 (-)	NCBI
Rnor_6.0	14	2,083,756 - 2,099,811 (-)	NCBI
Rnor_5.0	14	2,078,799 - 2,095,561 (-)	NCBI

Sequence:

show sequence

CGAGGCCTGAAGCCCACTCTAGTGTCCCCTAATGCCGGGTTTAGGAGAGGAGGGTATCTTGCAG
ACAAGCAGCCAGATACTTATGTTTTGGCCCACACAGGTTTGGGGGAGGATGAACTAGTCGCTAG
TATTAAGACTAAAAACCGTAAATTTAAAAGGGGAAAAAAAAAGCTTCACAACGTGTGTACAAAA
GTCACCTGGCAGTACTGGACCCAGAATCCTGTTGATGTCAAACACTTAGAGCTGTCCATTTCAG
CCCTTGTCTCTGCATCGAAATGGCTGAAGTCTACAGGGTTGAAACATCCCTCTGATATGCTCAG
AGCTACACTTCTTCCCAGGCTGCTGTGACAACTTGGTGACTCCACCATGTCCAGGCTCCAGGTC
CAGGAGCAGGCAGTGGATTCCGAGGGAGACTCATCCCTATACAGGAGAGATGAGGAGGGGACAC
AGAGCTCCCACCGCATGCTGGGCTTTAGTGATGCCTTACTATCCATCATCGCCACTGTCATGAT
CCTGCCTGTGACCCACACAGAGATCTCACCAGAACAGCAGTTTGACAAAAGTATACAGAAACTT
CTAGCAACTAGGATTGCTGTCTACCTCATGACATTTCTAATCGTAACTGTGGCCTGGGCAGCAC
ATACCAGATTGTTCCAGGTTGTTGGAAAAATAGATGATACACTTGCCTTGCTCAACCTGGCCTG
TATGATGACCATCACCCTTCTGCCCTACACATTTTCGCTAATGGTAACATTCCCTGATGTGCCC
CTGGGCATCTTCCTGTTCTGCATGTGTGTGATTGCCATTGGATCTGTGCAGGCAATGATCGTGG
GTTATGCCTTCCACTTCCCACATCTGCTGAATCCACAAATCCAGTGCTCTACACATAGGGCCCT
GTCCCGGCGGCACATTCTGCACCTAGTCCTCCGTGGCCCAGCACTCTGTTTTGTTGCAGCTGTC
TTTTCCCTCTTCTTCTTCCCCTTGTCATACCTGCTGATGGTGACTGTCATCTTCCTCCCTCACA
TCAGCAAGGCTACCACCTGGTGTAAAGACAAGTTTATGGGCCACAGGGAGTCTCCAGCTCACAA
TGTAGAGCCCTTCAGTATTGACCTGCATGCGCCCCTCAGCAAAGAACGGGTGGAAGCTTTCAGT
GACGGTGTCTATGCCATTGTGGCCACACTCCTCATCTTGGACATCTGTGAGGACAATGTTCCGG
ATCCCAAGGATGTGCAACAGAAGTTCAGTGGCAGCCTTGTGGCTGCCCTGGGTGCATATGGGCC
ACAGTTCCTGGCATACTTCGGCTCCTTCGCCACAGTGGGTCTGCTCTGGTTTGCCCACCACTCA
CTCTTCCTGCATGTCCGGAAGGCTACACAGACCATGGGGTTGTTCAACATACTGTCACTGGCCT
TTGTGGGGGGCCTCCCTCTGGCCTACCAGCAGACCTCGGCGTTTGCCCGGCAACCCCGTGATGA
ACTTGAGCGTGTGCGTGTCAGCTGTGCCATCATCTTCTTTGCCAGCATCTTCCAGTTTGCCATC
TGGACTACAGCCCTGCTGCACCAGAGAGAAACACTGCAGCCAGCTGTGCAGTTTGGTGGGCAGG
AACATGCTTTCATGTTTGCCAAGCTCGCACTGTACCCCTGTGCCAGCCTGCTGGCCTTTGCCGC
CACCTGCCTACTGAGTCGGTTCAGCACAGCCATCTTCCACCTCATGCAGATTGCAGTGCCCTTT
GCGTTCCTGTTGCTCCGGCTCCTGGTACGCCTTGCCCTGGCAGGCCTTCAAGTCCTATGGGACC
TCTGGCCAGAGCGTCCCCAACAAGACCAGGGTGAACCCGAGACACAGTCCCAGCTCTTGCCTGC
CTCCTGCTAATGCCAAGAAAGCCACTCCTGCCTATCGTAGTCATACTGCAAAGGGTCTTGTGGA
GATGTCTTAGTACAAGTTTATCGCGACACTGGAGTTGTGGATATATTGGCCCGAGTATTGTTTA
CACTGTGAAATATCAATATCTATTTCAAAACTATGAA

hide sequence

RefSeq Acc Id:

XM_017599261 ⟹ XP_017454750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,236 (-)	NCBI
mRatBN7.2	14	1,073,410 - 1,089,762 (-)	NCBI
Rnor_6.0	14	2,083,756 - 2,100,006 (-)	NCBI

Sequence:

show sequence

CAGAGGGCGCGAGCCTACAGACGCCAAGCTCCTAGGAGGCACGGAGTAAGGGCCGTCGCCATCT
GACCCTAACCTCGTCCGGTTGCTTCCGCTGGCCCGGGTCCAGCCTCGGTGGCTAGAGCGTCGCG
GGACGTTGGGCGCGCGCTGCGGACAGCCCCAGAGCCCGCCGCTCGCGCCTGACGCCTCAAGCCC
TTGTCTCTGCATCGAAATGGCTGAAGTCTACAGGGTTGAAACATCCCTCTGATATGCTCAGAGC
TACACTTCTTCCCAGGCTGCTGTGACAACTTGGTGACTCCACCATGTCCAGGCTCCAGGTCCAG
GAGCAGGCAGTGGATTCCGAGGGAGACTCATCCCTATACAGGAGAGATGAGGAGGGGACACAGA
GCTCCCACCGCATGCTGGGCTTTAGTGATGCCTTACTATCCATCATCGCCACTGTCATGATCCT
GCCTGTGACCCACACAGAGATCTCACCAGAACAGCAGTTTGACAAAAGTATACAGAAACTTCTA
GCAACTAGGATTGCTGTCTACCTCATGACATTTCTAATCGTAACTGTGGCCTGGGCAGCACATA
CCAGATTGTTCCAGGTTGTTGGAAAAATAGATGATACACTTGCCTTGCTCAACCTGGCCTGTAT
GATGACCATCACCCTTCTGCCCTACACATTTTCGCTAATGGTAACATTCCCTGATGTGCCCCTG
GGCATCTTCCTGTTCTGCATGTGTGTGATTGCCATTGGATCTGTGCAGTCATACCTGCTGATGG
TGACTGTCATCTTCCTCCCTCACATCAGCAAGGCTACCACCTGGTGTAAAGACAAGTTTATGGG
CCACAGGGAGTCTCCAGCTCACAATGTAGAGCCCTTCAGTATTGACCTGCATGCGCCCCTCAGC
AAAGAACGGGTGGAAGCTTTCAGTGACGGTGTCTATGCCATTGTGGCCACACTCCTCATCTTGG
ACATCTGTGAGGACAATGTTCCGGATCCCAAGGATGTGCAACAGAAGTTCAGTGGCAGCCTTGT
GGCTGCCCTGGGTGCATATGGGCCACAGTTCCTGGCATACTTCGGCTCCTTCGCCACAGTGGGT
CTGCTCTGGTTTGCCCACCACTCACTCTTCCTGCATGTCCGGAAGGCTACACAGACCATGGGGT
TGTTCAACATACTGTCACTGGCCTTTGTGGGGGGCCTCCCTCTGGCCTACCAGCAGACCTCGGC
GTTTGCCCGGCAACCCCGTGATGAACTTGAGCGTGTGCGTGTCAGCTGTGCCATCATCTTCTTT
GCCAGCATCTTCCAGTTTGCCATCTGGACTACAGCCCTGCTGCACCAGAGAGAAACACTGCAGC
CAGCTGTGCAGTTTGGTGGGCAGGAACATGCTTTCATGTTTGCCAAGCTCGCACTGTACCCCTG
TGCCAGCCTGCTGGCCTTTGCCGCCACCTGCCTACTGAGTCGGTTCAGCACAGCCATCTTCCAC
CTCATGCAGATTGCAGTGCCCTTTGCGTTCCTGTTGCTCCGGCTCCTGGTACGCCTTGCCCTGG
CAGGCCTTCAAGTCCTATGGGACCTCTGGCCAGAGCGTCCCCAACAAGACCAGGGTGAACCCGA
GACACAGTCCCAGCTCTTGCCTGCCTCCTGCTAATGCCAAGAAAGCCACTCCTGCCTATCGTAG
TCATACTGCAAAGGGTCTTGTGGAGATGTCTTAGTACAAGTTTATCGCGACACTGGAGTTGTGG
ATATATTGGCCCGAGTATTGTTTACACTGTGAAATATCAATATCTATTTCAAAACTATGAA

hide sequence

RefSeq Acc Id:

XM_017599263 ⟹ XP_017454752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,153 (-)	NCBI
mRatBN7.2	14	1,073,410 - 1,089,764 (-)	NCBI
Rnor_6.0	14	2,083,756 - 2,100,005 (-)	NCBI

Sequence:

show sequence

AGAGGGCGCGAGCCTACAGACGCCAAGCTCCTAGGAGGCACGGAGTAAGGGCCGTCGCCATCTG
ACCCTAACCTCGTCCGGTTGCTTCCGCTGGCCCGGGTCCAGCCTCGGTGGCTAGAGCGTCGCGG
GACGTTGGGCGCGCGCTGCGGACAGCCCCAGAGCCCGCCGCTCGCGCCTGACGCCTCAAGATCC
TGCCTGTGACCCACACAGAGATCTCACCAGAACAGCAGTTTGACAAAAGTATACAGAAACTTCT
AGCAACTAGGATTGCTGTCTACCTCATGACATTTCTAATCGTAACTGTGGCCTGGGCAGCACAT
ACCAGATTGTTCCAGGTTGTTGGAAAAATAGATGATACACTTGCCTTGCTCAACCTGGCCTGTA
TGATGACCATCACCCTTCTGCCCTACACATTTTCGCTAATGGTAACATTCCCTGATGTGCCCCT
GGGCATCTTCCTGTTCTGCATGTGTGTGATTGCCATTGGATCTGTGCAGGCAATGATCGTGGGT
TATGCCTTCCACTTCCCACATCTGCTGAATCCACAAATCCAGTGCTCTACACATAGGGCCCTGT
CCCGGCGGCACATTCTGCACCTAGTCCTCCGTGGCCCAGCACTCTGTTTTGTTGCAGCTGTCTT
TTCCCTCTTCTTCTTCCCCTTGTCATACCTGCTGATGGTGACTGTCATCTTCCTCCCTCACATC
AGCAAGGCTACCACCTGGTGTAAAGACAAGTTTATGGGCCACAGGGAGTCTCCAGCTCACAATG
TAGAGCCCTTCAGTATTGACCTGCATGCGCCCCTCAGCAAAGAACGGGTGGAAGCTTTCAGTGA
CGGTGTCTATGCCATTGTGGCCACACTCCTCATCTTGGACATCTGTGAGGACAATGTTCCGGAT
CCCAAGGATGTGCAACAGAAGTTCAGTGGCAGCCTTGTGGCTGCCCTGGGTGCATATGGGCCAC
AGTTCCTGGCATACTTCGGCTCCTTCGCCACAGTGGGTCTGCTCTGGTTTGCCCACCACTCACT
CTTCCTGCATGTCCGGAAGGCTACACAGACCATGGGGTTGTTCAACATACTGTCACTGGCCTTT
GTGGGGGGCCTCCCTCTGGCCTACCAGCAGACCTCGGCGTTTGCCCGGCAACCCCGTGATGAAC
TTGAGCGTGTGCGTGTCAGCTGTGCCATCATCTTCTTTGCCAGCATCTTCCAGTTTGCCATCTG
GACTACAGCCCTGCTGCACCAGAGAGAAACACTGCAGCCAGCTGTGCAGTTTGGTGGGCAGGAA
CATGCTTTCATGTTTGCCAAGCTCGCACTGTACCCCTGTGCCAGCCTGCTGGCCTTTGCCGCCA
CCTGCCTACTGAGTCGGTTCAGCACAGCCATCTTCCACCTCATGCAGATTGCAGTGCCCTTTGC
GTTCCTGTTGCTCCGGCTCCTGGTACGCCTTGCCCTGGCAGGCCTTCAAGTCCTATGGGACCTC
TGGCCAGAGCGTCCCCAACAAGACCAGGGTGAACCCGAGACACAGTCCCAGCTCTTGCCTGCCT
CCTGCTAATGCCAAGAAAGCCACTCCTGCCTATCGTAGTCATACTGCAAAGGGTCTTGTGGAGA
TGTCTTAGTACAAGTTTATCGCGACACTGGAGTTGTGGATATATTGGCCCGAGTATTGTTTACA
CTGTGAAATATCAATATCTATTTCAAAACTATGAA

hide sequence

RefSeq Acc Id:

XM_039092128 ⟹ XP_038948056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,181 (-)	NCBI
mRatBN7.2	14	1,073,410 - 1,089,762 (-)	NCBI

RefSeq Acc Id:

XM_039092130 ⟹ XP_038948058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,222,607 (-)	NCBI
mRatBN7.2	14	1,073,410 - 1,077,729 (-)	NCBI

RefSeq Acc Id:

XM_063273296 ⟹ XP_063129366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,181 (-)	NCBI

RefSeq Acc Id:

XM_063273297 ⟹ XP_063129367

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,181 (-)	NCBI

RefSeq Acc Id:

XM_063273298 ⟹ XP_063129368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,181 (-)	NCBI

RefSeq Acc Id:

XM_063273300 ⟹ XP_063129370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,124 (-)	NCBI

RefSeq Acc Id:

XM_063273301 ⟹ XP_063129371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	1,217,926 - 1,234,124 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014013	(Get FASTA)	NCBI Sequence Viewer
	XP_006250620	(Get FASTA)	NCBI Sequence Viewer
	XP_017454750	(Get FASTA)	NCBI Sequence Viewer
	XP_017454752	(Get FASTA)	NCBI Sequence Viewer
	XP_038948056	(Get FASTA)	NCBI Sequence Viewer
	XP_038948058	(Get FASTA)	NCBI Sequence Viewer
	XP_063129366	(Get FASTA)	NCBI Sequence Viewer
	XP_063129367	(Get FASTA)	NCBI Sequence Viewer
	XP_063129368	(Get FASTA)	NCBI Sequence Viewer
	XP_063129370	(Get FASTA)	NCBI Sequence Viewer
	XP_063129371	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79245	(Get FASTA)	NCBI Sequence Viewer
	EDL84021	(Get FASTA)	NCBI Sequence Viewer
	EDL84022	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000050
	ENSRNOP00000000050.3
GenBank Protein	Q6AY05	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014013 ⟸ NM_001013991

- UniProtKB:

Q6AY05 (UniProtKB/Swiss-Prot), A6KPE4 (UniProtKB/TrEMBL), A0A8I5ZUF0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRLQVQEQAVDSEGDSSLYRRDEEGTQSSHRMLGFSDALLSIIATVMILPVTHTEISPEQQFD
KSIQKLLATRIAVYLMTFLIVTVAWAAHTRLFQVVGKIDDTLALLNLACMMTITLLPYTFSLMV
TFPDVPLGIFLFCMCVIAIGSVQAMIVGYAFHFPHLLNPQIQCSTHRALSRRHILHLVLRGPAL
CFVAAVFSLFFFPLSYLLMVTVIFLPHISKATTWCKDKFMGHRESPAHNVEPFSIDLHAPLSKE
RVEAFSDGVYAIVATLLILDICEDNVPDPKDVQQKFSGSLVAALGAYGPQFLAYFGSFATVGLL
WFAHHSLFLHVRKATQTMGLFNILSLAFVGGLPLAYQQTSAFARQPRDELERVRVSCAIIFFAS
IFQFAIWTTALLHQRETLQPAVQFGGQEHAFMFAKLALYPCASLLAFAATCLLSRFSTAIFHLM
QIAVPFAFLLLRLLVRLALAGLQVLWDLWPERPQQDQGEPETQSQLLPASC

hide sequence

RefSeq Acc Id:	XP_006250620 ⟸ XM_006250558
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY05 (UniProtKB/Swiss-Prot), A6KPE4 (UniProtKB/TrEMBL), A0A8I5ZUF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRLQVQEQAVDSEGDSSLYRRDEEGTQSSHRMLGFSDALLSIIATVMILPVTHTEISPEQQFD KSIQKLLATRIAVYLMTFLIVTVAWAAHTRLFQVVGKIDDTLALLNLACMMTITLLPYTFSLMV TFPDVPLGIFLFCMCVIAIGSVQAMIVGYAFHFPHLLNPQIQCSTHRALSRRHILHLVLRGPAL CFVAAVFSLFFFPLSYLLMVTVIFLPHISKATTWCKDKFMGHRESPAHNVEPFSIDLHAPLSKE RVEAFSDGVYAIVATLLILDICEDNVPDPKDVQQKFSGSLVAALGAYGPQFLAYFGSFATVGLL WFAHHSLFLHVRKATQTMGLFNILSLAFVGGLPLAYQQTSAFARQPRDELERVRVSCAIIFFAS IFQFAIWTTALLHQRETLQPAVQFGGQEHAFMFAKLALYPCASLLAFAATCLLSRFSTAIFHLM QIAVPFAFLLLRLLVRLALAGLQVLWDLWPERPQQDQGEPETQSQLLPASC hide sequence

RefSeq Acc Id:	XP_017454750 ⟸ XM_017599261
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRLQVQEQAVDSEGDSSLYRRDEEGTQSSHRMLGFSDALLSIIATVMILPVTHTEISPEQQFD KSIQKLLATRIAVYLMTFLIVTVAWAAHTRLFQVVGKIDDTLALLNLACMMTITLLPYTFSLMV TFPDVPLGIFLFCMCVIAIGSVQSYLLMVTVIFLPHISKATTWCKDKFMGHRESPAHNVEPFSI DLHAPLSKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVQQKFSGSLVAALGAYGPQFLAYF GSFATVGLLWFAHHSLFLHVRKATQTMGLFNILSLAFVGGLPLAYQQTSAFARQPRDELERVRV SCAIIFFASIFQFAIWTTALLHQRETLQPAVQFGGQEHAFMFAKLALYPCASLLAFAATCLLSR FSTAIFHLMQIAVPFAFLLLRLLVRLALAGLQVLWDLWPERPQQDQGEPETQSQLLPASC hide sequence

RefSeq Acc Id:	XP_017454752 ⟸ XM_017599263
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTFLIVTVAWAAHTRLFQVVGKIDDTLALLNLACMMTITLLPYTFSLMVTFPDVPLGIFLFCMC VIAIGSVQAMIVGYAFHFPHLLNPQIQCSTHRALSRRHILHLVLRGPALCFVAAVFSLFFFPLS YLLMVTVIFLPHISKATTWCKDKFMGHRESPAHNVEPFSIDLHAPLSKERVEAFSDGVYAIVAT LLILDICEDNVPDPKDVQQKFSGSLVAALGAYGPQFLAYFGSFATVGLLWFAHHSLFLHVRKAT QTMGLFNILSLAFVGGLPLAYQQTSAFARQPRDELERVRVSCAIIFFASIFQFAIWTTALLHQR ETLQPAVQFGGQEHAFMFAKLALYPCASLLAFAATCLLSRFSTAIFHLMQIAVPFAFLLLRLLV RLALAGLQVLWDLWPERPQQDQGEPETQSQLLPASC hide sequence

Ensembl Acc Id:

ENSRNOP00000000050 ⟸ ENSRNOT00000000050

RefSeq Acc Id:	XP_038948056 ⟸ XM_039092128
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948058 ⟸ XM_039092130
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000080137 ⟸ ENSRNOT00000094320

Ensembl Acc Id:

ENSRNOP00000082603 ⟸ ENSRNOT00000114727

RefSeq Acc Id:	XP_063129368 ⟸ XM_063273298
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129366 ⟸ XM_063273296
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129367 ⟸ XM_063273297
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZUF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129371 ⟸ XM_063273301
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063129370 ⟸ XM_063273300
- Peptide Label:	isoform X6

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY05-F1-model_v2	AlphaFold	Q6AY05	1-499	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699146

Promoter ID:

EPDNEW_R9670

Type:

initiation region

Name:

Tmem175_2

Description:

transmembrane protein 175

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9671

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	2,099,820 - 2,099,880	EPDNEW

RGD ID:

13699147

Promoter ID:

EPDNEW_R9671

Type:

initiation region

Name:

Tmem175_1

Description:

transmembrane protein 175

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9670

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	2,099,996 - 2,100,056	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309712	AgrOrtholog
BioCyc Gene	G2FUF-16682	BioCyc
Ensembl Genes	ENSRNOG00000000044	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000000050	ENTREZGENE
	ENSRNOT00000000050.7	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7132812	IMAGE-MGC_LOAD
InterPro	TMEM175	UniProtKB/Swiss-Prot
KEGG Report	rno:305623	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94332	IMAGE-MGC_LOAD
NCBI Gene	305623	ENTREZGENE
PANTHER	ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175	UniProtKB/Swiss-Prot
	ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175	UniProtKB/Swiss-Prot
Pfam	DUF1211	UniProtKB/Swiss-Prot
PhenoGen	Tmem175	PhenoGen
RatGTEx	ENSRNOG00000000044	RatGTEx
UniProt	A0A8I5ZPE6_RAT	UniProtKB/TrEMBL
	A0A8I5ZUF0	ENTREZGENE, UniProtKB/TrEMBL
	A6KPE4	ENTREZGENE, UniProtKB/TrEMBL
	Q6AY05	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Tmem175	transmembrane protein 175	RGD1309712	similar to RIKEN cDNA 3010001K23 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1309712	similar to RIKEN cDNA 3010001K23 gene	RGD1309712_predicted	similar to RIKEN cDNA 3010001K23 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1309712_predicted	similar to RIKEN cDNA 3010001K23 gene (predicted)	LOC305623_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305623_predicted	similar to RIKEN cDNA 3010001K23 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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