Bclaf1 (BCL2-associated transcription factor 1) - Rat Genome Database

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Gene: Bclaf1 (BCL2-associated transcription factor 1) Rattus norvegicus
Analyze
Symbol: Bclaf1 (Ensembl: Mtfr2)
Name: BCL2-associated transcription factor 1 (Ensembl:mitochondrial fission regulator 2)
RGD ID: 1309704
Description: Orthologous to human BCLAF1 (BCL2 associated transcription factor 1); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Aa2-041; bcl-2-associated transcription factor 1; Fam54a; LOC293017
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,904,572 - 16,937,106 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl116,914,118 - 16,936,801 (+)EnsemblGRCr8
mRatBN7.2115,088,436 - 15,117,666 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl115,070,894 - 15,148,832 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx114,842,676 - 14,869,479 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,844,610 - 20,871,413 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0115,068,422 - 15,095,207 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,799,753 - 15,828,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,782,477 - 15,860,624 (+)Ensemblrn6Rnor6.0
Rnor_5.0117,344,231 - 17,373,316 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4115,605,220 - 15,632,005 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera113,519,166 - 13,545,951 (+)NCBICelera
RGSC_v3.1115,605,283 - 15,634,268 (+)NCBI
Cytogenetic Map1p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brevetoxin B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
eugenol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
GSK-J4  (ISO)
hexadecanoic acid  (ISO)
hexane  (EXP)
hydrogen peroxide  (ISO)
hypochlorous acid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PF-3758309  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (IEA)
nuclear speck  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function
DNA binding  (IEA,ISO)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10330179   PMID:12477932   PMID:17938203   PMID:20439489   PMID:22658674   PMID:22681889   PMID:24100041   PMID:24453340  


Genomics

Comparative Map Data
Bclaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,904,572 - 16,937,106 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl116,914,118 - 16,936,801 (+)EnsemblGRCr8
mRatBN7.2115,088,436 - 15,117,666 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl115,070,894 - 15,148,832 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx114,842,676 - 14,869,479 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,844,610 - 20,871,413 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0115,068,422 - 15,095,207 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,799,753 - 15,828,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,782,477 - 15,860,624 (+)Ensemblrn6Rnor6.0
Rnor_5.0117,344,231 - 17,373,316 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4115,605,220 - 15,632,005 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera113,519,166 - 13,545,951 (+)NCBICelera
RGSC_v3.1115,605,283 - 15,634,268 (+)NCBI
Cytogenetic Map1p12NCBI
BCLAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,256,627 - 136,289,846 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6136,256,627 - 136,289,851 (-)Ensemblhg38GRCh38
GRCh376136,577,765 - 136,610,984 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366136,619,694 - 136,652,682 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346136,621,418 - 136,652,682NCBI
Celera6137,318,441 - 137,351,433 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,142,584 - 134,175,576 (-)NCBIHuRef
CHM1_16136,840,527 - 136,873,516 (-)NCBICHM1_1
T2T-CHM13v2.06137,444,735 - 137,477,958 (-)NCBIT2T-CHM13v2.0
Bclaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391020,187,897 - 20,218,390 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1020,188,215 - 20,220,359 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381020,310,512 - 20,342,644 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1020,312,469 - 20,344,613 (+)Ensemblmm10GRCm38
MGSCv371020,032,275 - 20,062,307 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361020,001,885 - 20,031,917 (+)NCBIMGSCv36mm8
Celera1020,201,333 - 20,231,349 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.75NCBI
Bclaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955439608,861 - 641,005 (+)Ensembl
ChiLan1.0NW_004955439608,849 - 641,005 (+)NCBIChiLan1.0ChiLan1.0
BCLAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25156,229,451 - 156,262,590 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16154,128,230 - 154,160,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06134,023,195 - 134,054,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,111,309 - 138,144,098 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,115,451 - 138,137,108 (-)EnsemblpanPan2panpan1.1
BCLAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1128,852,654 - 28,882,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl128,855,041 - 28,882,006 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha129,730,810 - 29,760,326 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0129,008,040 - 29,037,548 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,008,044 - 29,037,461 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1128,894,237 - 28,923,741 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0128,777,218 - 28,806,716 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,077,927 - 29,107,433 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bclaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946123,901,929 - 123,932,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365603,680,657 - 3,712,004 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365603,681,145 - 3,711,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCLAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,872,183 - 27,902,974 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1127,872,167 - 27,902,980 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,490,843 - 31,521,703 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCLAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11337,133,898 - 37,165,296 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1337,143,772 - 37,166,793 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660409,323,651 - 9,356,248 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bclaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248861,394,588 - 1,424,778 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248861,394,556 - 1,424,294 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bclaf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12216,242,335 - 216,271,299 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bclaf1
74 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:14
Count of miRNA genes:14
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000049492
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat

Markers in Region
RH132072  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p12UniSTS
RH135023  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p12UniSTS
RH141612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2115,086,831 - 15,087,039 (+)MAPPERmRatBN7.2
Rnor_6.0115,798,149 - 15,798,356NCBIRnor6.0
Rnor_5.0117,342,627 - 17,342,834UniSTSRnor5.0
RGSC_v3.4115,603,516 - 15,603,723UniSTSRGSC3.4
Celera113,517,462 - 13,517,669UniSTS
RH 3.4 Map1147.21UniSTS
Cytogenetic Map1p12UniSTS
UniSTS:236317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2115,099,034 - 15,099,234 (+)MAPPERmRatBN7.2
Rnor_6.0115,810,351 - 15,810,550NCBIRnor6.0
Rnor_5.0117,354,829 - 17,355,028UniSTSRnor5.0
RGSC_v3.4115,615,719 - 15,615,918UniSTSRGSC3.4
Celera113,529,665 - 13,529,864UniSTS
Cytogenetic Map1p12UniSTS
D10Csu3  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8116,920,875 - 16,921,468 (+)Marker Load Pipeline
mRatBN7.2115,101,291 - 15,101,884 (+)MAPPERmRatBN7.2
Rnor_6.0115,812,608 - 15,813,200NCBIRnor6.0
Rnor_5.0117,357,086 - 17,357,678UniSTSRnor5.0
RGSC_v3.4115,617,976 - 15,618,568UniSTSRGSC3.4
Celera113,531,922 - 13,532,514UniSTS
Cytogenetic Map1p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 24 83 34 30 18 73 18 6 196 119 11 70 46 51 12 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001047852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000078589   ⟹   ENSRNOP00000068911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,088,575 - 15,115,298 (+)Ensembl
Rnor_6.0 Ensembl115,799,853 - 15,826,636 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079069   ⟹   ENSRNOP00000072258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,123,232 - 15,138,630 (+)Ensembl
Rnor_6.0 Ensembl115,834,779 - 15,850,422 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083012   ⟹   ENSRNOP00000072221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl115,834,878 - 15,847,768 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088025   ⟹   ENSRNOP00000071825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,070,894 - 15,148,832 (+)Ensembl
Rnor_6.0 Ensembl115,782,477 - 15,860,624 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089966   ⟹   ENSRNOP00000072352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,070,894 - 15,146,586 (+)Ensembl
Rnor_6.0 Ensembl115,782,477 - 15,860,624 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094509   ⟹   ENSRNOP00000097938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,086,571 - 15,117,520 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100188   ⟹   ENSRNOP00000076713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl115,088,529 - 15,117,519 (+)Ensembl
RefSeq Acc Id: NM_001047852   ⟹   NP_001041317
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,120 - 16,934,905 (+)NCBI
mRatBN7.2115,088,536 - 15,115,321 (+)NCBI
Rnor_6.0115,799,853 - 15,826,637 (+)NCBI
Rnor_5.0117,344,231 - 17,373,316 (+)NCBI
RGSC_v3.4115,605,220 - 15,632,005 (+)RGD
Celera113,519,166 - 13,545,951 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227652   ⟹   XP_006227714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,094 - 16,937,106 (+)NCBI
mRatBN7.2115,088,495 - 15,117,522 (+)NCBI
Rnor_6.0115,799,826 - 15,828,838 (+)NCBI
Rnor_5.0117,344,231 - 17,373,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227653   ⟹   XP_006227715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,114 - 16,937,106 (+)NCBI
mRatBN7.2115,088,436 - 15,117,522 (+)NCBI
Rnor_6.0115,799,753 - 15,828,838 (+)NCBI
Rnor_5.0117,344,231 - 17,373,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227654   ⟹   XP_006227716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,084 - 16,937,106 (+)NCBI
mRatBN7.2115,088,494 - 15,117,522 (+)NCBI
Rnor_6.0115,799,826 - 15,828,838 (+)NCBI
Rnor_5.0117,344,231 - 17,373,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105467   ⟹   XP_038961395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,220 - 16,937,106 (+)NCBI
mRatBN7.2115,088,493 - 15,117,522 (+)NCBI
RefSeq Acc Id: XM_063284439   ⟹   XP_063140509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,084 - 16,937,106 (+)NCBI
RefSeq Acc Id: XM_063284449   ⟹   XP_063140519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,135 - 16,937,106 (+)NCBI
RefSeq Acc Id: XM_063284458   ⟹   XP_063140528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,904,572 - 16,937,106 (+)NCBI
RefSeq Acc Id: XM_063284466   ⟹   XP_063140536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,083 - 16,937,106 (+)NCBI
RefSeq Acc Id: XM_063284473   ⟹   XP_063140543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,917,579 - 16,937,106 (+)NCBI
RefSeq Acc Id: XM_063284478   ⟹   XP_063140548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,083 - 16,929,010 (+)NCBI
RefSeq Acc Id: XM_063284485   ⟹   XP_063140555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,083 - 16,922,818 (+)NCBI
RefSeq Acc Id: XR_010064690
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,908,083 - 16,929,010 (+)NCBI
RefSeq Acc Id: NP_001041317   ⟸   NM_001047852
- UniProtKB: B1WC16 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227715   ⟸   XM_006227653
- Peptide Label: isoform X2
- UniProtKB: B1WC16 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227716   ⟸   XM_006227654
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y6Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227714   ⟸   XM_006227652
- Peptide Label: isoform X2
- UniProtKB: B1WC16 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072258   ⟸   ENSRNOT00000079069
Ensembl Acc Id: ENSRNOP00000072221   ⟸   ENSRNOT00000083012
Ensembl Acc Id: ENSRNOP00000072352   ⟸   ENSRNOT00000089966
Ensembl Acc Id: ENSRNOP00000068911   ⟸   ENSRNOT00000078589
Ensembl Acc Id: ENSRNOP00000071825   ⟸   ENSRNOT00000088025
RefSeq Acc Id: XP_038961395   ⟸   XM_039105467
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y6Z0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097938   ⟸   ENSRNOT00000094509
Ensembl Acc Id: ENSRNOP00000076713   ⟸   ENSRNOT00000100188
RefSeq Acc Id: XP_063140528   ⟸   XM_063284458
- Peptide Label: isoform X2
- UniProtKB: B1WC16 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140536   ⟸   XM_063284466
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y6Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140548   ⟸   XM_063284478
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JU04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140555   ⟸   XM_063284485
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140509   ⟸   XM_063284439
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AX06 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140519   ⟸   XM_063284449
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AX06 (UniProtKB/TrEMBL),   A0A8I5Y6Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140543   ⟸   XM_063284473
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y6Z0 (UniProtKB/TrEMBL)
Protein Domains
Btz

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689517
Promoter ID:EPDNEW_R40
Type:initiation region
Name:Mtfr2_1
Description:mitochondrial fission regulator 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0115,799,888 - 15,799,948EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309704 AgrOrtholog
BioCyc Gene G2FUF-62195 BioCyc
Ensembl Genes ENSRNOG00000058050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078589 ENTREZGENE
  ENSRNOT00000078589.3 UniProtKB/TrEMBL
  ENSRNOT00000088025 ENTREZGENE
  ENSRNOT00000088025.3 UniProtKB/TrEMBL
  ENSRNOT00000089966 ENTREZGENE
  ENSRNOT00000089966.3 UniProtKB/TrEMBL
  ENSRNOT00000094509 ENTREZGENE
  ENSRNOT00000094509.2 UniProtKB/TrEMBL
  ENSRNOT00000100188 ENTREZGENE
  ENSRNOT00000100188.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9028507 IMAGE-MGC_LOAD
  IMAGE:9101044 IMAGE-MGC_LOAD
InterPro Btz_dom UniProtKB/TrEMBL
  Mtfr1 UniProtKB/TrEMBL
  THRAP3_BCLAF1 UniProtKB/TrEMBL
KEGG Report rno:293017 UniProtKB/TrEMBL
MGC_CLONE MGC:187775 IMAGE-MGC_LOAD
  MGC:188768 IMAGE-MGC_LOAD
NCBI Gene 293017 ENTREZGENE
PANTHER PTHR15268 UniProtKB/TrEMBL
  PTHR15268:SF4 UniProtKB/TrEMBL
Pfam Btz UniProtKB/TrEMBL
  Mito_fiss_reg UniProtKB/TrEMBL
  THRAP3_BCLAF1 UniProtKB/TrEMBL
PhenoGen Bclaf1 PhenoGen
RatGTEx ENSRNOG00000058050 RatGTEx
UniProt A0A0G2JU04 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K1G0_RAT UniProtKB/TrEMBL
  A0A0G2K2S3_RAT UniProtKB/TrEMBL
  A0A8I5Y6Z0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AX06 ENTREZGENE, UniProtKB/TrEMBL
  A6JPD0_RAT UniProtKB/TrEMBL
  B1WC16 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Bclaf1  BCL2-associated transcription factor 1  Bclaf1_predicted  BCL2-associated transcription factor 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Bclaf1_predicted  BCL2-associated transcription factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED