Fam114a1l1 (family with sequence similarity 114, member A1-like 1) - Rat Genome Database

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Gene: Fam114a1l1 (family with sequence similarity 114, member A1-like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Fam114a1l1 (Ensembl: Fam114a1)
Name: family with sequence similarity 114, member A1-like 1 (Ensembl:family with sequence similarity 114, member A1)
RGD ID: 1309701
Description: Orthologous to human FAM114A1 (family with sequence similarity 114 member A1); INTERACTS WITH alpha-Zearalanol; atrazine; endosulfan.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC316729; RGD1309701; similar to RIKEN cDNA 9130005N14
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89119,102,983 - 119,106,167 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9119,104,441 - 119,106,141 (-)EnsemblGRCr8
GRCr8 Ensembl1443,629,375 - 43,699,800 (-)EnsemblGRCr8
mRatBN7.29111,656,805 - 111,659,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9111,656,366 - 111,659,557 (-)EnsemblmRatBN7.2
Rnor_6.09120,099,302 - 120,101,072 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9120,099,333 - 120,101,098 (-)Ensemblrn6Rnor6.0
Rnor_5.09119,554,889 - 119,556,798 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49110,989,629 - 110,991,376 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera9108,769,336 - 108,771,106 (-)NCBICelera
RGSC_v3.19111,199,108 - 111,200,726 (-)NCBI
Cytogenetic Map9q38NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:84
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000002917
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 10 64 152 91 90 59 29 59 6 263 125 9 131 61 88 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000002883   ⟹   ENSRNOP00000002883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1443,629,375 - 43,699,800 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000002917   ⟹   ENSRNOP00000002917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9119,104,441 - 119,106,141 (-)Ensembl
mRatBN7.2 Ensembl9111,656,366 - 111,659,557 (-)Ensembl
Rnor_6.0 Ensembl9120,099,333 - 120,101,098 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105967   ⟹   ENSRNOP00000082523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1443,629,375 - 43,693,008 (-)Ensembl
RefSeq Acc Id: XM_237514   ⟹   XP_237514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89119,102,983 - 119,106,167 (-)NCBI
mRatBN7.29111,656,805 - 111,659,571 (-)NCBI
Rnor_6.09120,099,302 - 120,101,072 (-)NCBI
Rnor_5.09119,554,889 - 119,556,798 (-)NCBI
RGSC_v3.49110,989,629 - 110,991,376 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001418207 (Get FASTA)   NCBI Sequence Viewer  
  XP_237514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002917
  ENSRNOP00000002917.4
  ENSRNOP00000082523.1
RefSeq Acc Id: XP_237514   ⟸   XM_237514
- Sequence:
Ensembl Acc Id: ENSRNOP00000002917   ⟸   ENSRNOT00000002917
Ensembl Acc Id: ENSRNOP00000082523   ⟸   ENSRNOT00000105967
Ensembl Acc Id: ENSRNOP00000002883   ⟸   ENSRNOT00000002883

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5F0-F1-model_v2 AlphaFold D4A5F0 1-566 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696921
Promoter ID:EPDNEW_R7440
Type:multiple initiation site
Name:Fam114a1l1_1
Description:family with sequence similarity 114, member A1-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09120,101,060 - 120,101,120EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309701 AgrOrtholog
BioCyc Gene G2FUF-26323 BioCyc
Ensembl Genes ENSRNOG00000002110 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000026504 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002917 ENTREZGENE
  ENSRNOT00000002917.7 UniProtKB/TrEMBL
  ENSRNOT00000105967.2 UniProtKB/TrEMBL
InterPro DUF719 UniProtKB/TrEMBL
KEGG Report rno:316729 UniProtKB/TrEMBL
NCBI Gene 316729 ENTREZGENE
PANTHER DUF719 UniProtKB/TrEMBL
  PROTEIN NOXP20 UniProtKB/TrEMBL
Pfam DUF719 UniProtKB/TrEMBL
PhenoGen Fam114a1l1 PhenoGen
RatGTEx ENSRNOG00000002110 RatGTEx
  ENSRNOG00000026504 RatGTEx
UniProt A0A8I5ZXD6_RAT UniProtKB/TrEMBL
  A0A8I6GGB2 ENTREZGENE
  D4A5F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Fam114a1l1  family with sequence similarity 114, member A1-like 1  RGD1309701  similar to RIKEN cDNA 9130005N14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309701  similar to RIKEN cDNA 9130005N14   RGD1309701_predicted  similar to RIKEN cDNA 9130005N14 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309701_predicted  similar to RIKEN cDNA 9130005N14 (predicted)  LOC316729_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316729_predicted  similar to RIKEN cDNA 9130005N14 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL